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Conserved domains on  [gi|2785812188|gb|XDZ84562|]
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ATP synthase subunit 8 (mitochondrion) [Camelina sativa]

Protein Classification

ATP synthase subunit B family protein( domain architecture ID 10492040)

ATP synthase subunit B family protein such as subunits b and b' from the F(o) complex in F-type ATP synthase (FoF1-ATPase) found in chloroplasts and in bacterial plasma membranes; the b subunits are part of the peripheral stalk that links the F(1) and F(o) complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YMF19 pfam02326
Plant ATP synthase F0; This family corresponds to subunit 8 (YMF19) of the F0 complex of plant ...
 2-82 1.80e-26

Plant ATP synthase F0; This family corresponds to subunit 8 (YMF19) of the F0 complex of plant and algae mitochondrial F-ATPases (EC:3.6.1.34).


:

Pssm-ID: 396760  Cd Length: 84  Bit Score: 95.16  E-value: 1.80e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2785812188   2 PQLDKFTYFSQFFWLCLFFFTFYIFICNdgDGVLGISRILKLRNQLLSHRGK----TIRSKDPNSLEDLLRKG-FSTGVS 76
Cdd:pfam02326   1 PQLDKFTYFTQFFWLCLFFFTFYIFLLN--FILPKISRILKLRKKLLSSLISsklgKEQSLLGVSKDSLLANSsLSTSNS 78


                  ....*.
gi 2785812188  77 YMYASL 82
Cdd:pfam02326  79 YLYSSL 84
YMF19_C pfam06449
ATP synthase YMF19, C-terminal; This domain represents the C-terminal region of YMF19 of the ...
 93-140 3.28e-18

ATP synthase YMF19, C-terminal; This domain represents the C-terminal region of YMF19 of the F0 complex of mitochondrial F-ATPases from plants. This family is found in conjunction with pfam02326.


:

Pssm-ID: 368914  Cd Length: 51  Bit Score: 73.19  E-value: 3.28e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2785812188  93 DLLGKRRKITLISCFGEISGSRGMERNILYNISKSS---PSNTGRWITCRN 140
Cdd:pfam06449   1 DLFGKRRIITFIECFGEISGSRGMERNIFYLISKSSyntSSNPGWGITCRN 51
 
Name Accession Description Interval E-value
YMF19 pfam02326
Plant ATP synthase F0; This family corresponds to subunit 8 (YMF19) of the F0 complex of plant ...
 2-82 1.80e-26

Plant ATP synthase F0; This family corresponds to subunit 8 (YMF19) of the F0 complex of plant and algae mitochondrial F-ATPases (EC:3.6.1.34).


Pssm-ID: 396760  Cd Length: 84  Bit Score: 95.16  E-value: 1.80e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2785812188   2 PQLDKFTYFSQFFWLCLFFFTFYIFICNdgDGVLGISRILKLRNQLLSHRGK----TIRSKDPNSLEDLLRKG-FSTGVS 76
Cdd:pfam02326   1 PQLDKFTYFTQFFWLCLFFFTFYIFLLN--FILPKISRILKLRKKLLSSLISsklgKEQSLLGVSKDSLLANSsLSTSNS 78


                  ....*.
gi 2785812188  77 YMYASL 82
Cdd:pfam02326  79 YLYSSL 84
YMF19_C pfam06449
ATP synthase YMF19, C-terminal; This domain represents the C-terminal region of YMF19 of the ...
 93-140 3.28e-18

ATP synthase YMF19, C-terminal; This domain represents the C-terminal region of YMF19 of the F0 complex of mitochondrial F-ATPases from plants. This family is found in conjunction with pfam02326.


Pssm-ID: 368914  Cd Length: 51  Bit Score: 73.19  E-value: 3.28e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2785812188  93 DLLGKRRKITLISCFGEISGSRGMERNILYNISKSS---PSNTGRWITCRN 140
Cdd:pfam06449   1 DLFGKRRIITFIECFGEISGSRGMERNIFYLISKSSyntSSNPGWGITCRN 51
PRK06569 PRK06569
F0F1 ATP synthase subunit B'; Validated
 1-28 2.69e-05

F0F1 ATP synthase subunit B'; Validated


Pssm-ID: 180627  Cd Length: 155  Bit Score: 41.79  E-value: 2.69e-05
                          10        20
                  ....*....|....*....|....*...
gi 2785812188   1 MPQLDKFTYFSQFFWLCLFFFTFYIFIC 28
Cdd:PRK06569    1 MPQFDIATYYSQIFWLIVTFGLLYIFVY 28
 
Name Accession Description Interval E-value
YMF19 pfam02326
Plant ATP synthase F0; This family corresponds to subunit 8 (YMF19) of the F0 complex of plant ...
 2-82 1.80e-26

Plant ATP synthase F0; This family corresponds to subunit 8 (YMF19) of the F0 complex of plant and algae mitochondrial F-ATPases (EC:3.6.1.34).


Pssm-ID: 396760  Cd Length: 84  Bit Score: 95.16  E-value: 1.80e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2785812188   2 PQLDKFTYFSQFFWLCLFFFTFYIFICNdgDGVLGISRILKLRNQLLSHRGK----TIRSKDPNSLEDLLRKG-FSTGVS 76
Cdd:pfam02326   1 PQLDKFTYFTQFFWLCLFFFTFYIFLLN--FILPKISRILKLRKKLLSSLISsklgKEQSLLGVSKDSLLANSsLSTSNS 78


                  ....*.
gi 2785812188  77 YMYASL 82
Cdd:pfam02326  79 YLYSSL 84
YMF19_C pfam06449
ATP synthase YMF19, C-terminal; This domain represents the C-terminal region of YMF19 of the ...
 93-140 3.28e-18

ATP synthase YMF19, C-terminal; This domain represents the C-terminal region of YMF19 of the F0 complex of mitochondrial F-ATPases from plants. This family is found in conjunction with pfam02326.


Pssm-ID: 368914  Cd Length: 51  Bit Score: 73.19  E-value: 3.28e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2785812188  93 DLLGKRRKITLISCFGEISGSRGMERNILYNISKSS---PSNTGRWITCRN 140
Cdd:pfam06449   1 DLFGKRRIITFIECFGEISGSRGMERNIFYLISKSSyntSSNPGWGITCRN 51
PRK06569 PRK06569
F0F1 ATP synthase subunit B'; Validated
 1-28 2.69e-05

F0F1 ATP synthase subunit B'; Validated


Pssm-ID: 180627  Cd Length: 155  Bit Score: 41.79  E-value: 2.69e-05
                          10        20
                  ....*....|....*....|....*...
gi 2785812188   1 MPQLDKFTYFSQFFWLCLFFFTFYIFIC 28
Cdd:PRK06569    1 MPQFDIATYYSQIFWLIVTFGLLYIFVY 28
ATP8 MTH00169
ATP synthase F0 subunit 8; Provisional
 1-27 1.97e-04

ATP synthase F0 subunit 8; Provisional


Pssm-ID: 214446  Cd Length: 67  Bit Score: 37.65  E-value: 1.97e-04
                          10        20
                  ....*....|....*....|....*...
gi 2785812188   1 MPQLDKFTYFSQFFW-LCLFFFTFYIFI 27
Cdd:MTH00169    1 MPQLDSVTYLTQYIWtLIILFFLFSLLV 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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