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Conserved domains on  [gi|2753207282|gb|XCI26297|]
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succinate dehydrogenase subunit 4 (mitochondrion) [Populus tomentosa]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SdhD super family cl43620
Succinate dehydrogenase, hydrophobic anchor subunit [Energy production and conversion];
43-109 5.30e-06

Succinate dehydrogenase, hydrophobic anchor subunit [Energy production and conversion];


The actual alignment was detected with superfamily member COG2142:

Pssm-ID: 441745  Cd Length: 124  Bit Score: 42.51  E-value: 5.30e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753207282  43 LFQRITAALLLPLIII------------YKKVSSTFLPN----------LSLFWHINEGIEEIMADYVHQEMTRNWILVY 100
Cdd:COG2142    24 LLQRVTAVALVVLVLWflffllslpgadYAEVAAWFASPfwailtllflLSALYHAWLGLRVVIEDYVHGTGLRLALLLL 103

                  ....*....
gi 2753207282 101 LRLFLLIVI 109
Cdd:COG2142   104 LTLALVALA 112
 
Name Accession Description Interval E-value
SdhD COG2142
Succinate dehydrogenase, hydrophobic anchor subunit [Energy production and conversion];
43-109 5.30e-06

Succinate dehydrogenase, hydrophobic anchor subunit [Energy production and conversion];


Pssm-ID: 441745  Cd Length: 124  Bit Score: 42.51  E-value: 5.30e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753207282  43 LFQRITAALLLPLIII------------YKKVSSTFLPN----------LSLFWHINEGIEEIMADYVHQEMTRNWILVY 100
Cdd:COG2142    24 LLQRVTAVALVVLVLWflffllslpgadYAEVAAWFASPfwailtllflLSALYHAWLGLRVVIEDYVHGTGLRLALLLL 103

                  ....*....
gi 2753207282 101 LRLFLLIVI 109
Cdd:COG2142   104 LTLALVALA 112
SQR_TypeC_SdhD_like cd03495
Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) ...
43-109 2.65e-03

Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit-like; composed of predominantly uncharacterized bacterial proteins with similarity to the E. coli SdhD subunit. One characterized protein is the respiratory Complex II SdhD subunit of the only eukaryotic member, Reclinomonas americana. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. It is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. E. coli SQR is classified as Type C SQRs because it contains two transmembrane subunits and one heme group. The SdhD and SdhC subunits are membrane anchor subunits containing heme and quinone binding sites. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the membrane anchor subunits via electron transport through FAD and three iron-sulfur centers. The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes.


Pssm-ID: 239575  Cd Length: 100  Bit Score: 34.88  E-value: 2.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753207282  43 LFQRITAALLLPLII--IYK--------------------KVSSTFLPNLSLFWHINEGIEEIMADYVHQEMTRNWILVY 100
Cdd:cd03495     4 WAQRVTAVALVPLVLwfVFSvalllgasyaevvawlahpfNAILLILTLVSAFYHARLGMQVVIEDYVHSEGLRLALIIA 83

                  ....*....
gi 2753207282 101 LRLFLLIVI 109
Cdd:cd03495    84 VKLFAIATA 92
 
Name Accession Description Interval E-value
SdhD COG2142
Succinate dehydrogenase, hydrophobic anchor subunit [Energy production and conversion];
43-109 5.30e-06

Succinate dehydrogenase, hydrophobic anchor subunit [Energy production and conversion];


Pssm-ID: 441745  Cd Length: 124  Bit Score: 42.51  E-value: 5.30e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753207282  43 LFQRITAALLLPLIII------------YKKVSSTFLPN----------LSLFWHINEGIEEIMADYVHQEMTRNWILVY 100
Cdd:COG2142    24 LLQRVTAVALVVLVLWflffllslpgadYAEVAAWFASPfwailtllflLSALYHAWLGLRVVIEDYVHGTGLRLALLLL 103

                  ....*....
gi 2753207282 101 LRLFLLIVI 109
Cdd:COG2142   104 LTLALVALA 112
SQR_TypeC_SdhD_like cd03495
Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) ...
43-109 2.65e-03

Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit-like; composed of predominantly uncharacterized bacterial proteins with similarity to the E. coli SdhD subunit. One characterized protein is the respiratory Complex II SdhD subunit of the only eukaryotic member, Reclinomonas americana. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. It is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. E. coli SQR is classified as Type C SQRs because it contains two transmembrane subunits and one heme group. The SdhD and SdhC subunits are membrane anchor subunits containing heme and quinone binding sites. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the membrane anchor subunits via electron transport through FAD and three iron-sulfur centers. The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes.


Pssm-ID: 239575  Cd Length: 100  Bit Score: 34.88  E-value: 2.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2753207282  43 LFQRITAALLLPLII--IYK--------------------KVSSTFLPNLSLFWHINEGIEEIMADYVHQEMTRNWILVY 100
Cdd:cd03495     4 WAQRVTAVALVPLVLwfVFSvalllgasyaevvawlahpfNAILLILTLVSAFYHARLGMQVVIEDYVHSEGLRLALIIA 83

                  ....*....
gi 2753207282 101 LRLFLLIVI 109
Cdd:cd03495    84 VKLFAIATA 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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