NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2745580187|gb|XBW51285|]
View 

NADH dehydrogenase subunit 2 (mitochondrion) [Phoxinus bigerri]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475913)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-348 0e+00

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 553.26  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187   1 MNPYVLVTLLSSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMTQHHHPRAVEATTKYFLTQATAAALILFASTTNAWL 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  81 TGTWHIDNMSNSFAATMTIAALALKIGLAPVHFWMPEVMQGLDLFTGLILSTWQKLAPLALLIQVAPAiDPLLLTAFGLT 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 161 STLVGGWGGLNQTQLRKILAYSSIAHMGWMIVILQYAPHLTLLALLTYIFMTSAAFLTLKSMSTTKVSTLATAWSKNPVL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 241 ATTTALMLLSLGGLPPLTGFMPKLLVLQELTKQHLPLTATIMALAALLSLYFYLRLCYAMTLTIAPSTLNATTPWRAQVT 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|....*...
gi 2745580187 321 QISLPLALSTTVALGLLPMTPTILTLIS 348
Cdd:MTH00135  320 QLTLPLAISTTATLMLLPLTPAILALLT 347
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-348 0e+00

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 553.26  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187   1 MNPYVLVTLLSSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMTQHHHPRAVEATTKYFLTQATAAALILFASTTNAWL 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  81 TGTWHIDNMSNSFAATMTIAALALKIGLAPVHFWMPEVMQGLDLFTGLILSTWQKLAPLALLIQVAPAiDPLLLTAFGLT 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 161 STLVGGWGGLNQTQLRKILAYSSIAHMGWMIVILQYAPHLTLLALLTYIFMTSAAFLTLKSMSTTKVSTLATAWSKNPVL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 241 ATTTALMLLSLGGLPPLTGFMPKLLVLQELTKQHLPLTATIMALAALLSLYFYLRLCYAMTLTIAPSTLNATTPWRAQVT 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|....*...
gi 2745580187 321 QISLPLALSTTVALGLLPMTPTILTLIS 348
Cdd:MTH00135  320 QLTLPLAISTTATLMLLPLTPAILALLT 347
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 4-338 2.62e-30

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 120.22  E-value: 2.62e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187   4 YVLVtLLSSLGLgtTLTFASSHWLLAWMGLEINTLAIIPL-MTQHHHPRAVEATTKYFLTQATAAALILFASTTNAWLTG 82
Cdd:COG1007   105 YALL-LFATLGM--MLMASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATG 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  83 TWHIDNMSNSFAAT------------MTIAALALKIGLAPVHFWMPEVMQGLDLFTGLILSTWQKLAPLALLIQVAPAID 150
Cdd:COG1007   182 SLNLAGIAAALAAGganspllllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAF 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 151 P-------LLLTAFGLTSTLVGGWGGLNQTQLRKILAYSSIAHMGWMIVILQYAPHL----TLLALLTYIFMTSAAFLTL 219
Cdd:COG1007   262 PglaadwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVI 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 220 KSMS-----TTKVSTLATAWSKNPVLATTTALMLLSLGGLPPLTGFMPKLLVLQELTKQHLPLTATIMALAALLSLYFYL 294
Cdd:COG1007   342 LLLSrkggeAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYL 421

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 2745580187 295 RLCYAMTLTIAPSTLNATTPWraqVTQISLPLALSTTVALGLLP 338
Cdd:COG1007   422 RVVKAMYFDEPEEEAPISAPP---GLRVALVIAALLVLLLGIFP 462
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-286 1.24e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 101.24  E-value: 1.24e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  23 SSHWLLAWMGLEINTLAIIPLMT-QHHHPRAVEATTKYFLTQATAAALILFASTTNAWLTGTWHIDNMSN---------- 91
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKaltgglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  92 -SFAATMTIAALALKIGLAPVHFWMPEVMQGLDLFTGLIL-STWQKLAPLAL------LIQVAPAIDPLLLTaFGLTSTL 163
Cdd:pfam00361  81 lLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLirrsllYLPSSPFIQQILLI-LAIISML 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 164 VGGWGGLNQTQLRKILAYSSIAHMGWMIVIL----QYAPHLTLLALLTYIFMTSAAFLTLKSMSTTKVST-----LATAW 234
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTrnirdYGGLA 239

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2745580187 235 SKNPVLATTTALMLLSLGGLPPLTGFMPKLLVLQELTKQHLPLTATIMALAA 286
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 4-300 5.35e-24

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 102.33  E-value: 5.35e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187   4 YVLVtLLSSLGLGttLTFASSHWLLAWMGLEINTLAIIPLMT-QHHHPRAVEATTKYFLTQATAAALILFASTTNAWLTG 82
Cdd:TIGR01770 105 YILL-LFALLGIF--LLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTG 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  83 TWHIDNMSNSFAATMT------------IAALALKIGLAPVHFWMPEVMQGLDLFTGLILSTWQKLAPLALLIQV----- 145
Cdd:TIGR01770 182 SLNFEDLLLFLSNGMLnisllllgivliLVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyil 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 146 --APAIDPLLLTAFGLTSTLVGGWGGLNQTQLRKILAYSSIAHMGWMIV-------ILQYAphlTLLALLTYIFMTSAAF 216
Cdd:TIGR01770 262 fgFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIgllagtlEGIKA---VLFYIFIYALMSLGAF 338

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 217 LTLKSMSTTK------VSTLATAWSKNPVLATTTALMLLSLGGLPPLTGFMPKLLVLQELTKQHLPLTATIMALAALLSL 290
Cdd:TIGR01770 339 GVLSLLRSYKdewieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGA 418

                         330
                  ....*....|
gi 2745580187 291 YFYLRLCYAM 300
Cdd:TIGR01770 419 FYYLRVVKVM 428
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-348 0e+00

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 553.26  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187   1 MNPYVLVTLLSSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMTQHHHPRAVEATTKYFLTQATAAALILFASTTNAWL 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  81 TGTWHIDNMSNSFAATMTIAALALKIGLAPVHFWMPEVMQGLDLFTGLILSTWQKLAPLALLIQVAPAiDPLLLTAFGLT 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 161 STLVGGWGGLNQTQLRKILAYSSIAHMGWMIVILQYAPHLTLLALLTYIFMTSAAFLTLKSMSTTKVSTLATAWSKNPVL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 241 ATTTALMLLSLGGLPPLTGFMPKLLVLQELTKQHLPLTATIMALAALLSLYFYLRLCYAMTLTIAPSTLNATTPWRAQVT 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|....*...
gi 2745580187 321 QISLPLALSTTVALGLLPMTPTILTLIS 348
Cdd:MTH00135  320 QLTLPLAISTTATLMLLPLTPAILALLT 347
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-347 5.35e-150

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 425.87  E-value: 5.35e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187   1 MNPYVLVTLLSSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMTQHHHPRAVEATTKYFLTQATAAALILFASTTNAWL 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  81 TGTWHIDNMSNSFAATMTIAALALKIGLAPVHFWMPEVMQGLDLFTGLILSTWQKLAPLALLIQVAPAIDPLLLTAFGLT 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 161 STLVGGWGGLNQTQLRKILAYSSIAHMGWMIVILQYAPHLTLLALLTYIFMTSAAFLTLKSMSTTKVSTLATAWSKNPVL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 241 ATTTALMLLSLGGLPPLTGFMPKLLVLQELTKQHLPLTATIMALAALLSLYFYLRLCYAMTLTIAPSTLNATTPWRaQVT 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWR-FKN 319

                         330       340
                  ....*....|....*....|....*..
gi 2745580187 321 QISLPLALSTTVALGLLPMTPTILTLI 347
Cdd:MTH00070  320 KTNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-347 6.00e-127

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 367.61  E-value: 6.00e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187   1 MNPYVLVTLLSSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMTQHHHPRAVEATTKYFLTQATAAALILFASTTNAWL 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  81 TGTWHIDNMSNSFAATMTIAALALKIGLAPVHFWMPEVMQGLDLFTGLILSTWQKLAPLALLIQVAPAIDPLLLTAFGLT 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 161 STLVGGWGGLNQTQLRKILAYSSIAHMGWMIVILQYAPHLTLLALLTYIFMTSAAFLTLKSMSTTKVSTLATAWSKNPVL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 241 ATTTALMLLSLGGLPPLTGFMPKLLVLQELTKQHLPLTATIMALAALLSLYFYLRLCYAMTLTIAPSTLNATTPWRAQVT 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*..
gi 2745580187 321 QiSLPLALSTTVALGLLPMTPTILTLI 347
Cdd:MTH00112  321 K-NTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-346 9.85e-125

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 361.86  E-value: 9.85e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187   1 MNPYVLVTLLSSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMTQHHHPRAVEATTKYFLTQATAAALILFASTTNAWL 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  81 TGTWHIDNMSNSFAATMTIAALALKIGLAPVHFWMPEVMQGLDLFTGLILSTWQKLAPLALLIQVAPAIDPLLLTAFGLT 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 161 STLVGGWGGLNQTQLRKILAYSSIAHMGWMIVILQYAPHLTLLALLTYIFMTSAAFLTLKSMSTTKVSTLATAWSKNPVL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 241 ATTTALMLLSLGGLPPLTGFMPKLLVLQELTKQHLPLTATIMALAALLSLYFYLRLCYAMTLTIAPSTLNATTPWRAQVT 320
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                         330       340
                  ....*....|....*....|....*.
gi 2745580187 321 QISLPLALSTTVALGLLPMTPTILTL 346
Cdd:MTH00105  321 KPMTLLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-347 3.56e-111

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 327.31  E-value: 3.56e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187   1 MNPYVLVTLLSSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMTQHHHPRAVEATTKYFLTQATAAALILFASTTNAWL 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  81 TGTWHIDNMSNSFAATMTIAALALKIGLAPVHFWMPEVMQGLDLFTGLILSTWQKLAPLALLIQVAPAIDPLLLTAFGLT 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 161 STLVGGWGGLNQTQLRKILAYSSIAHMGWMIVILQYAPHLTLLALLTYIFMTSAAFLTLKSMSTTKVSTLATAWSKNPVL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 241 ATTTALMLLSLGGLPPLTGFMPKLLVLQELTKQHLPLTATIMALAALLSLYFYLRLCYAMTLTIAPSTLNATTPWRAQVT 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|....*..
gi 2745580187 321 qISLPLALSTTVALGLLPMTPTILTLI 347
Cdd:MTH00200  321 -SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-347 1.20e-88

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 269.88  E-value: 1.20e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187   1 MNPYVLVTLLSSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMTQHHHPRAVEATTKYFLTQATAAALILFASTTNAWL 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  81 TGTWHIDNMSNSFAATMTIAALALKIGLAPVHFWMPEVMQGLDLFTGLILSTWQKLAPLALLIQVAPAIDPLLLTAFGLT 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 161 STLVGGWGGLNQTQLRKILAYSSIAHMGWMIVILQYAPHLTLLALLTYIFMTSAAFLTLKSMSTTKVSTLATAWSKNPVL 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 241 ATTTALMLLSLGGLPPLTGFMPKLLVLQELTKQHLPLTATIMALAALLSLYFYLRLCYAMTLTIAPSTLNATTPWRAQVT 320
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                         330       340
                  ....*....|....*....|....*..
gi 2745580187 321 QISLPLALSTTVALGLLPMTPTILTLI 347
Cdd:MTH00041  321 ITVYGVILSILSSISILGLLLIPLFLS 347
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-302 2.51e-57

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 188.88  E-value: 2.51e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187   1 MNPYVLVtLLSSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMTQHHHPRAVEATTKYFLTQATAAALILFASTTNAWL 80
Cdd:MTH00160    3 MNSSKLL-FLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  81 TgtwhidNMSNSFAATMTIAALALKIGLAPVHFWMPEVMQGLDLFTGLILSTWQKLAPLALLIQVapaIDPLLLTAFGLT 160
Cdd:MTH00160   82 L------MLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 161 STLVGGWGGLNQTQLRKILAYSSIAHMGWMIVILQYAPHLTLLALLTYIFMTSAAFLTLKSMSTTKVSTLATAWSKNPVL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2745580187 241 ATTTALMLLSLGGLPPLTGFMPKLLVLQELTKQHLPLTATIMALAALLSLYFYLRLCYAMTL 302
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLM 294
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 10-302 3.04e-50

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 170.45  E-value: 3.04e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  10 LSSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMTQHHHPRAVEATTKYFLTQATAAALILFASTTNAWLTGTWhidnm 89
Cdd:MTH00144   10 LFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW----- 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  90 snsFAATMTIAALALKIGLAPVHFWMPEVMQGLDLFTGLILSTWQKLAPLALLIQVAPAIDPL-LLTAFGLTSTLVGGWG 168
Cdd:MTH00144   85 ---FSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAyLLCVISVLSALVGSIG 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 169 GLNQTQLRKILAYSSIAHMGWMIVILQYAPHLTLLALLTYIfMTSAAFLTLKSMSTTKVSTLATAWSKNPVLATTTALML 248
Cdd:MTH00144  162 GLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYI-VSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIISLL 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2745580187 249 LSLGGLPPLTGFMPKLLVLQELTKQHLPLTATIMALAALLSLYFYLRLCYAMTL 302
Cdd:MTH00144  241 LSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 11-338 2.97e-48

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 165.34  E-value: 2.97e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  11 SSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMTQHHHPRAVEATTKYFLTQATAAALILFASTTnawltgTWHIDNMS 90
Cdd:MTH00011   13 STMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSFPSLL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  91 NSFAATMTIAALALKIGLAPVHFWMPEVMQGLDLFTGLILSTWQKLAPLALLIQVAPAIDPLLLTAFGLTSTLVGGWGGL 170
Cdd:MTH00011   87 KNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGM 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 171 NQTQLRKILAYSSIAHMGWMIVILQYAPHLTLLALLTYIFMTSAAFLTLKSMSTTKVSTLATAWSKNPVLATTTALMLLS 250
Cdd:MTH00011  167 NQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLS 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 251 LGGLPPLTGFMPKLLVLQELTKQHLPLTATIMALAALLSLYFYLRLCYAMTlTIAPSTLNATTPWRAQVTQISLPLAlst 330
Cdd:MTH00011  247 LGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFM-YLSPTFSSLKSAPYEPKTKILISMC--- 322


                  ....*...
gi 2745580187 331 TVALGLLP 338
Cdd:MTH00011  323 TLSLGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 9-298 1.42e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 158.30  E-value: 1.42e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187   9 LLSSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMTQHHHPRAVEATTKYFLTQATAAALILFASTTNawltgtwHIDN 88
Cdd:MTH00197    3 FLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLS-------FSNL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  89 MSNSFAATMTIAALALKIGLAPVHFWMPEVMQGLDLFTGLILSTWQKLAPLALLIQVAPAidPLLLTAFGLTSTLVGGWG 168
Cdd:MTH00197   76 YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSS--FMGLLICSVLSSLIGGIG 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 169 GLNQTQLRKILAYSSIAHMGWMIVILQYAPHLTLLALLTYIFMTSAAFLTLKSMSTTKVSTLATAWSKNPVLATTTALML 248
Cdd:MTH00197  154 GMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSF 233

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 2745580187 249 LSLGGLPPLTGFMPKLLVLQELTKQHLPLTATIMALAALLSLYFYLRLCY 298
Cdd:MTH00197  234 LSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 4-338 2.62e-30

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 120.22  E-value: 2.62e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187   4 YVLVtLLSSLGLgtTLTFASSHWLLAWMGLEINTLAIIPL-MTQHHHPRAVEATTKYFLTQATAAALILFASTTNAWLTG 82
Cdd:COG1007   105 YALL-LFATLGM--MLMASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATG 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  83 TWHIDNMSNSFAAT------------MTIAALALKIGLAPVHFWMPEVMQGLDLFTGLILSTWQKLAPLALLIQVAPAID 150
Cdd:COG1007   182 SLNLAGIAAALAAGganspllllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAF 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 151 P-------LLLTAFGLTSTLVGGWGGLNQTQLRKILAYSSIAHMGWMIVILQYAPHL----TLLALLTYIFMTSAAFLTL 219
Cdd:COG1007   262 PglaadwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVI 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 220 KSMS-----TTKVSTLATAWSKNPVLATTTALMLLSLGGLPPLTGFMPKLLVLQELTKQHLPLTATIMALAALLSLYFYL 294
Cdd:COG1007   342 LLLSrkggeAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYL 421

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 2745580187 295 RLCYAMTLTIAPSTLNATTPWraqVTQISLPLALSTTVALGLLP 338
Cdd:COG1007   422 RVVKAMYFDEPEEEAPISAPP---GLRVALVIAALLVLLLGIFP 462
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 15-296 2.58e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 104.73  E-value: 2.58e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  15 LGTTLTFASSHWLLAWMGLEINTLAIIPLMTQHHHP-RAVEATTKYFLTQATAAALILFASTTNAWLTGTWHID------ 87
Cdd:MTH00196    4 LGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSgYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSyinlvl 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  88 NMSNSFAATMT-------IAALALKIGLAPVHFWMPEVMQGLDLFTGLILSTWQKLAPLALLIQVAPAIDPLLLTafGLT 160
Cdd:MTH00196   84 NSGQSFSSVSVpigylliIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIG--GLF 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 161 STLVGGWGGLNQTQLRKILAYSSIAHMGWMIVILQYAPHLTLLALLTYIF----MTSAAFLTLKSMSTTK--VSTLATAW 234
Cdd:MTH00196  162 SLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVYLFiyiiMSICVFSIILALNVYKnlIIEFSGLS 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2745580187 235 SKNPVLATTTALMLLSLGGLPPLTGFMPKLLVLQELTKQHLPLTATIMALAALLSLYFYLRL 296
Cdd:MTH00196  242 RRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
4-339 3.41e-25

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 105.67  E-value: 3.41e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187   4 YVLVtLLSSLGLGttLTFASSHWLLAWMGLEINTLAIIPL-MTQHHHPRAVEATTKYFLTQATAAALILFASTTNAWLTG 82
Cdd:PRK05777  106 YLLV-LFALLGMM--VMVSANDLLTLFLGLELLSLPLYALaALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATG 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  83 TWHIDNMSNSFAATMT------------IAALALKIGLAPVHFWMPEVMQGLDLFTGLILSTWQKLAPLALLIQVAPAID 150
Cdd:PRK05777  183 SLSFAGIAKALADGSGnsllllfglvflLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLLVVAF 262

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 151 P-------LLLTAFGLTSTLVGGWGGLNQTQLRKILAYSSIAHMGWMIVILQYAPHL----TLLALLTYIFMTSAAFLTL 219
Cdd:PRK05777  263 GglsedwqQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEgysaVLFYLLAYLFMTLGAFGVI 342

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 220 KSMS-----TTKVSTLATAWSKNPVLATTTALMLLSLGGLPPLTGFMPKLLVLQELTKQHLPLTATIMALAALLSLYFYL 294
Cdd:PRK05777  343 SLLRrkggeAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYL 422

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 2745580187 295 RLCYAMTLTIAPSTLNATTPWRAQVTQISLPLALstTVALGLLPM 339
Cdd:PRK05777  423 RVIKLMYFDEPPRDAPVNWPLSAGGAVLSVSALL--VLVLGIFPQ 465
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-286 1.24e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 101.24  E-value: 1.24e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  23 SSHWLLAWMGLEINTLAIIPLMT-QHHHPRAVEATTKYFLTQATAAALILFASTTNAWLTGTWHIDNMSN---------- 91
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKaltgglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  92 -SFAATMTIAALALKIGLAPVHFWMPEVMQGLDLFTGLIL-STWQKLAPLAL------LIQVAPAIDPLLLTaFGLTSTL 163
Cdd:pfam00361  81 lLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLirrsllYLPSSPFIQQILLI-LAIISML 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 164 VGGWGGLNQTQLRKILAYSSIAHMGWMIVIL----QYAPHLTLLALLTYIFMTSAAFLTLKSMSTTKVST-----LATAW 234
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTrnirdYGGLA 239

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2745580187 235 SKNPVLATTTALMLLSLGGLPPLTGFMPKLLVLQELTKQHLPLTATIMALAA 286
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 4-300 5.35e-24

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 102.33  E-value: 5.35e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187   4 YVLVtLLSSLGLGttLTFASSHWLLAWMGLEINTLAIIPLMT-QHHHPRAVEATTKYFLTQATAAALILFASTTNAWLTG 82
Cdd:TIGR01770 105 YILL-LFALLGIF--LLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTG 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  83 TWHIDNMSNSFAATMT------------IAALALKIGLAPVHFWMPEVMQGLDLFTGLILSTWQKLAPLALLIQV----- 145
Cdd:TIGR01770 182 SLNFEDLLLFLSNGMLnisllllgivliLVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyil 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 146 --APAIDPLLLTAFGLTSTLVGGWGGLNQTQLRKILAYSSIAHMGWMIV-------ILQYAphlTLLALLTYIFMTSAAF 216
Cdd:TIGR01770 262 fgFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIgllagtlEGIKA---VLFYIFIYALMSLGAF 338

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 217 LTLKSMSTTK------VSTLATAWSKNPVLATTTALMLLSLGGLPPLTGFMPKLLVLQELTKQHLPLTATIMALAALLSL 290
Cdd:TIGR01770 339 GVLSLLRSYKdewieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGA 418

                         330
                  ....*....|
gi 2745580187 291 YFYLRLCYAM 300
Cdd:TIGR01770 419 FYYLRVVKVM 428
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-296 4.30e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 99.71  E-value: 4.30e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  13 LGLGTTLTFASSHWLLAWMGLEINTLAI-IPLMTQHHHPRAVEATTKYFLTQATAAALILFASTTNAWLTGTWHID---- 87
Cdd:MTH00199  106 VALGSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQgins 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  88 NMSNSFAATMTIAALALKIGLAPVHFWMPEVMQGLDLFTGLILSTWQKLAPLALLIQVAPAIDPLLLTAfgLTSTLVGGW 167
Cdd:MTH00199  186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICA--VLSIIYGAI 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 168 GGLNQTQLRKILAYSSIAHMGWMIVILQYAP----HLTLLALLTYIFMTSAAFLTLKSMSTTK--VSTLATAWSKNPVLA 241
Cdd:MTH00199  264 GALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRKNPVIA 343

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2745580187 242 TTTALMLLSLGGLPPLTGFMPKLLVLQELTKQHLPLTATIMALAALLSLYFYLRL 296
Cdd:MTH00199  344 LTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 15-300 1.40e-17

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 83.27  E-value: 1.40e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  15 LGTTLTFASSHWLLAWMGLEINTLAIIPLMTQHHHPRAVEATTKYFLTQATAAALILFASTTNAWLTGTWHIDNMSN--- 91
Cdd:COG0651   118 AGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAArla 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  92 -------SFAATMTIAALALKIGLAPVHFWMPE-----------VMQGLDLFTGL--ILSTWQKLAPLALLIQVAPaidp 151
Cdd:COG0651   198 eldpgllLAAFALLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFLGT---- 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 152 lLLTAFGLTSTLVGGWGGLNQTQLRKILAYSSIAHMGWMIVILQYAPHLTLLALLTYI----FMTSAAFLT----LKSMS 223
Cdd:COG0651   274 -LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLAagaiERATG 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2745580187 224 TTKVSTLATAWSKNPVLATTTALMLLSLGGLPPLTGFMPKLLVLQELTKQHLPLTATIMALAALLSLYFYLRLCYAM 300
Cdd:COG0651   353 TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRA 429
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 13-209 1.44e-13

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 71.43  E-value: 1.44e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  13 LGLGTTLTFASSHWLLAWMGLEINTLAIIPLMTQHHHPRAV---------EATTKYFLTQATAAALILFASTTNAWLTG- 82
Cdd:MTH00198  197 VGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGn 276

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  83 -------------TWHIDNMSNSFAATMTIAALALKIGLAPVHFWMPEVMQGLDLFTGLILSTWQKLAPLALLIQVApaI 149
Cdd:MTH00198  277 egmlgtilsatleTTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLV--I 354

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 150 DPLLLTAFGLTSTLVGGWGGLNQTQLRKILAYSSIAHMGWMIVILQYAPHLTLLALLTYI 209
Cdd:MTH00198  355 TSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYA 414
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-300 3.19e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 67.34  E-value: 3.19e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  51 RAVEATTKYFLTQATAAALILFASTtnaWLTGT-------WHI------DNMSNSF----AATMTIAALALKIGLAPVHF 113
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVYGFS---WLYGLsggeielQEIvnglinTQMYNSPgisiALIFITVGIGFKLSLAPFHQ 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 114 WMPEVMQGLDLFTGLILSTWQKLAPLALLIQVAPAIDP-------LLLTAFGLTSTLVGGWGGLNQTQLRKILAYSSIAH 186
Cdd:CHL00049  236 WTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFYfssnewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQ 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 187 MGW-MIVILQ------YAPHLTLLalLTYIFMTSAAFLTLKSMS----TTKVSTLATAWSKNPVLATTTALMLLSLGGLP 255
Cdd:CHL00049  316 IGYvIIGIIVgdsndgYASMITYM--LFYIFMNLGTFACIVLFGlrtgTDNIRDYAGLYTKDPFLALSLALCLLSLGGIP 393

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 2745580187 256 PLTGFMPKLLVLQELTKQHLPLTATIMALAALLSLYFYLRLCYAM 300
Cdd:CHL00049  394 PLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKIIKLL 438
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-346 6.60e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 63.36  E-value: 6.60e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  33 LEINTLAIIPLMTQHHHPRAVEATTKYFLTQATAAALILFASTTNAWLTGTWHIDNMSNSFAATMTIA--------ALAL 104
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGALAENPTVVtafgfvllALAL 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 105 KIGLAPVHFWMPEVMQGLDLFTGLILSTWQKLAP---LALLIQVAPAIDPL-------LLTAFGLTSTLVGGWGGLNQTQ 174
Cdd:PRK08375  215 KAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAvyaLIRIYFTVFGGDFRfalglgwLLAVLALLSMLVGSLAALGQDD 294

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 175 LRKILAYSSIAHMGWMIVILQYAPHLTLLALLTYIF----MTSAAFLTLKSM----STTKVSTLATAWSKNPVLATTTAL 246
Cdd:PRK08375  295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLhhalMKGALFLAAGAIevtyGTRRLSELSGLGRRMPLTAAAFAV 374

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 247 MLLSLGGLPPLTGFMPKLLVLQELTKQHLPLTATIMALAALLSLYFYLRLCYAMTLTiaPSTLNATTPWRAQVTQISLPL 326
Cdd:PRK08375  375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFG--PPPPGSEAPKQEAPLGMLAPS 452

                         330       340
                  ....*....|....*....|
gi 2745580187 327 ALSTTVALGLLPMTPTILTL 346
Cdd:PRK08375  453 LALALLSLLLGIYAGPLLQL 472
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-300 1.43e-10

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 62.38  E-value: 1.43e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  50 PRAVEATTKYFLTQATAAALILFASTTNAWLT-GTWHIDNMSNSFAATMT----------IAALALKIGLAPVHFWMPEV 118
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYGSSLLYGLSgGSTQLSAIALALITSPSlglalalvfvIAGIAFKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 119 MQGLDLFTGLILSTWQKLAPLAL----LIQVAPAIDP---LLLTAFGLTSTLVGGWGGLNQTQLRKILAYSSIAHMGWMI 191
Cdd:PRK02504  237 YEGSPTPVVAFLSVGSKAAGFALairlLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 192 VIL------QYAPhlTLLALLTYIFMTSAAFLTLKSMS----TTKVSTLATAWSKNPVLATTTALMLLSLGGLPPLTGFM 261
Cdd:PRK02504  317 IGLvagteaGYAS--MVFYLLAYLFMNLGAFACVILFSlrtgTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFF 394

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 2745580187 262 PKLLVLQELTKQHLPLTATIMALAALLSLYFYLRLCYAM 300
Cdd:PRK02504  395 GKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIRVIKMM 433
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-341 3.53e-09

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 51.87  E-value: 3.53e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2745580187 291 YFYLRLCYAMTLTIAPSTLNATTPWRAQVTQISLPLALSTTVALGLLPMTP 341
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 48-308 5.72e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 54.21  E-value: 5.72e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  48 HHPRAVEATTKYFLTQATAAALILFASTTNAWLTGTWHIDNMS----------------NSFAATMTIAALAL-----KI 106
Cdd:PRK12667  158 DRGDAVEAAIKYALIGAVGTTLYFLALAFLYATFGTLNMADLSakirglsfpltgglagNPPLALGVALALALwaftiKA 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 107 GLAPVHFWMPEV-----------MQGLDLFTG---------LILSTWQKLAPLALLIQVapaidplLLTAFGLTSTLVGG 166
Cdd:PRK12667  238 AIFPNHFWLPDAhpaapspvsamLSGLVVNVGayaiirflyTIFGISPSLIDFRAALSP-------ILIILGAVSAIIGA 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 167 WGGLNQTQLRKILAYSSIAHMGWMIVILQYAPHLTLLALLTYI----------FMTSAAFLtlKSMSTTKVSTLATAWSK 236
Cdd:PRK12667  311 LMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIinhaiaksllFLASGVFI--HAAGTRDIDELAGLGRK 388

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2745580187 237 NPVLATTTALMLLSLGGLPPLTGFMPKLLVLQELTKQHLPLTATIMALAALLSLYFYLRLCYAMTLTIAPST 308
Cdd:PRK12667  389 MPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLFFGKPKSG 460
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-298 6.39e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 50.71  E-value: 6.39e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  50 PRAVEATTKYFLTQATAAALILFASTTNAWLTG------TWHIDNMSNSFAATMTIA---ALALKIGLAPVHFWMPEVM- 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgtfdllELLNLPLPFGVQTWLFLAffiAFAVKVPLFPLHTWLPDAHv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 120 QGLDLFTGLILSTWQKLAPLALL---IQVAP---AIDPLLLTAFGLTSTLVGGWGGLNQTQLRKILAYSSIAHMGWMIVI 193
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLrfnLPLFPdasLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLG 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 194 LQYAPHL----TLLALLTYIFMTSAAFLTL----KSMSTTKVSTLATAWSKNPVLATTTALMLLSLGGLPPLTGFMPKLL 265
Cdd:TIGR01972 312 IFSFNELgisgAVFQMISHGLITAALFLLVgvlyERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFL 391

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 2745580187 266 VLQELTKQHLPLT---ATIMALAALLSLYFYLRLCY 298
Cdd:TIGR01972 392 ILLGSFKVNPVVAflaALGIVLAAAYMLTLYKRVFF 427
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 111-222 2.77e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 45.72  E-value: 2.77e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 111 VHFWMPEVMQGLDLFTGLILSTWQKLAPLALLIQVAPAIDP-----LLLTAFGLTSTLVGGWGGLNQTQLRKILAYSSIA 185
Cdd:MTH00032  244 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKapltlLIITIFGALTAFFAATVGLVQNDLKKVIAYSTCS 323

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2745580187 186 HMGWMIVI--LQYAPHLTLLALLTYIFMTSAAFLTLKSM 222
Cdd:MTH00032  324 QLGYMVLIigIEGSHNVGLFHLVNHAFFKALLFLSAGSV 362
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-191 4.74e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 45.09  E-value: 4.74e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  33 LEINTLAIIPLMTQHHH-PRAVEATTKYFLTQATAAALILFASttnAWLTGTWHIDNMS-------------NSFAATMT 98
Cdd:PRK08376  150 LEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAylavkmsenptvvAKIALALF 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  99 IAALALKIGLAPVHFWMPEV--MQGLDLFTGLILSTWQKLAPLA--LLIQVAPAIDPL----LLTAFGLTSTLVGGWGGL 170
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPDAypAAPSSISAMLLVIKQAGLYALArvLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAV 306

                         170       180
                  ....*....|....*....|.
gi 2745580187 171 NQTQLRKILAYSSIAHMGWMI 191
Cdd:PRK08376  307 VQKDVKRLLAYHSVSQIGYML 327
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 1.85e-04

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 43.15  E-value: 1.85e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  49 HPRAVEATTKYFLTQATAAALILFASTTNAWLTGTW-----HIDNMSNSFAATMTI-----AALALKIGLAPVHFWMPEV 118
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTAQLLLflaffIAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 119 MQ-----GLDLFTGLILstwqKLA-------PLALLIQVAPAIDPLLLtAFGLTSTLVGGWGGLNQTQLRKILAYSSIAH 186
Cdd:COG1008   236 HVeaptaGSVLLAGVLL----KMGgygllrfALPLFPEASAYFAPLLA-ALGVIGIIYGALVALAQTDLKRLIAYSSVSH 310


                  ....*.
gi 2745580187 187 MGWMIV 192
Cdd:COG1008   311 MGFVLL 316
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 112-222 3.31e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 42.37  E-value: 3.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 112 HFWMPEVMQGLDLFTGLILSTWQKLAPLALLIQVAPAID--PLLL---TAFGLTSTLVGGWGGLNQTQLRKILAYSSIAH 186
Cdd:MTH00020  230 HTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEqaPLALiivTIVGSLTVFFAATVGLVQNDLKKVIAYSTCSQ 309

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2745580187 187 MGWMIV---ILQYAphLTLLALLTYIFMTSAAFLTLKSM 222
Cdd:MTH00020  310 LGYMVVacgLSHYS--ISLFHLMNHAFFKALLFLSAGSV 346
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 19-192 3.57e-04

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 42.22  E-value: 3.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  19 LTFASSHWLLAWMGLEINTLAIIPLMTQHHHPRAVEATTKYFLTQATAAALILFAS----------TTNAWLTGTW-HID 87
Cdd:PRK06458  123 LALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGDGEMAILWtELL 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  88 NMSNSFAAT-MTIA-ALAL-----KIGLAPVHFWMPevmqglD-----------LFTGLILstwqKLAPLAL-----LIQ 144
Cdd:PRK06458  203 KHASLLDPTlMKLAfVFLLigfgtKVGLFPMHAWLP------DahseapspvsaLLSGVLL----NVALYAVlryyiLID 272

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 2745580187 145 VAPAIDPL--LLTAFGLTSTLVGGWGGLNQTQLRKILAYSSIAHMGWMIV 192
Cdd:PRK06458  273 AAIGSDFPgrLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 81-287 5.24e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 41.83  E-value: 5.24e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  81 TGTWHIDNMSNSFAAT--MTIAALALKIG------LAPVHFWMPEVMQGLDLFTGLILSTWQKLAPLALLIQVAPAID-- 150
Cdd:PRK12644  184 AGTYRLSELLADPPTGpaVSVAVVLILVGalsksaIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVARLAPGFAdv 263

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 151 ----PLLLTaFGLTSTLVGGWGGLNQTQLRKILAYSSIAHMGWMIVILQYAPHLTLLALLTYIF---MTSAA-FLTL--- 219
Cdd:PRK12644  264 pvwrPTVLV-LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLLahaLFKAAlFLVVgii 342

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2745580187 220 -KSMSTTKVSTLATAWSKNPVLATTTALMLLSLGGLPPLTGFMPKLLVLQELTKQHLPLTATIMALAAL 287
Cdd:PRK12644  343 dHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVLHDGALGPAGPVVLAGI 411
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 17-209 5.39e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 41.66  E-value: 5.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  17 TTLTFASSHWLLAWMGLEINTLAIIPLMTQHHHPRAVEATTKYFLTQATA------AALILFASTTNAWLTGTWHIDNM- 89
Cdd:PRK08676  115 ITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNWTELa 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  90 --SNSFAATMTIAA-------LALKIGLAPVHFWMPE-----------VMQGLDLFTGLIlsTWQKLAPLALLIQVAPAI 149
Cdd:PRK08676  195 ahASLLSPSVLGASflfifigFLAKSGLVPFHTWLPAayakapsvvsaLLSGTVLNIGIY--GILRLSALLRQSGAAEQF 272

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 150 DPLLLtAFGLTSTLVGGWGGLNQTQLRKILAYSSIAHMGWMIVILQYAPHLTLLALLTYI 209
Cdd:PRK08676  273 SNVLI-GLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHM 331
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-310 1.42e-03

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 40.37  E-value: 1.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187   2 NPYVLVTLLSSLGLgttltFASSHWLLAWMGLEINTLAIIpLMTQHHHPRAVEATTKYFLTQATAAALILFASTTNAWLT 81
Cdd:PRK08668  101 NMFALMSLAGVLGV-----FLANDLLTLYIFWEIMTFSSF-MMVPMGKKESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  82 GTWHIDNMSNSF-AATMTIAALAL----------KIGLAPVHFWMPEVM-QGLDLFTGLILSTWQKLAPLALLIQVAPAI 149
Cdd:PRK08668  175 GTFDFADISQGLiNDTSTGFALIVflfllafgvaKAGIFPLHVWAPDAYsEAPQSFSAVLSGQLSKLGAYGFLLVLYVLP 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 150 DPLLLTAFGL----------------TSTLVGGWGGLNQTQLRKILAYSSIAHMGWMIVILQYAPHLTLLALLTYIF--- 210
Cdd:PRK08668  255 GTKLFSEFGTyrgvplfnyilawlgnISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFnha 334

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 211 -MTSAAFLTLKSM----STTKVSTLATAWSKNPVLATTTALMLLSLGGLPPLTGFMPKLLVLQELTKQHLPLTATIMALA 285
Cdd:PRK08668  335 lFKGLFFLIFAAViyrtGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFG 414

                         330       340
                  ....*....|....*....|....*
gi 2745580187 286 ALLSLYFYLRLCYAMTLTIAPSTLN 310
Cdd:PRK08668  415 SIGSFLYVFRPLAGVFLGQLPSDHK 439
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-203 1.45e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 40.47  E-value: 1.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  55 ATTKYFLTQATAAALILFASTTNAWLTGTWHIDNMSNSFAA----------TMTIAALALKIGLAPVHFWMP----EVMQ 120
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSFDYDAISTQNlslntqlillTGLLLGFGIKIPLVPLHTWLPdaytEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 121 GLDLFTGLILSTWQKLAPLALLIQVAPAIDPLL---LTAFGLTSTLVGGWGGLNQTQLRKILAYSSIAHMGWMIVILQYA 197
Cdd:PRK07363  238 AVAILLGGVLAKLGTYGLLRFGLQLFPQTWSLVapgLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317


                  ....*.
gi 2745580187 198 PHLTLL 203
Cdd:PRK07363  318 TQLSLL 323
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-298 3.28e-03

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 39.03  E-value: 3.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  50 PRAVEATTKYFLTQATAAALILFA----STTNAWLTGTWHI-DNMSNSFAATMTI-------AALALKIGLAPVHFWMPE 117
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIaDLLNLPLPPGVQYwlflaffIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 118 VMQ-----GLDLFTGLILstwqKLAPLALL---IQVAPAID----PLLLTaFGLTSTLVGGWGGLNQTQLRKILAYSSIA 185
Cdd:PRK05846  237 AHVqaptaGSVLLAGILL----KMGAYGLLrfsLPLFPDAShefaPIIIT-LGVIAIIYGALVALAQTDIKKLIAYSSIS 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 186 HMGWMIVILqYAphLTLLALLTYIFM-------TSAAFLTL----KSMSTTKVSTLATAWSKNPVLATTTALMLLSLGGL 254
Cdd:PRK05846  312 HMGFVTLGI-FA--GNQLGIQGAIFQmishglsSAALFLLVgvlyDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGL 388

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 2745580187 255 PPLTGFMPKLLVLQELTKQHLPLT---ATIMALAALLSLYFYLRLCY 298
Cdd:PRK05846  389 PGTSGFVGEFLILLGSFQVNPVIAfiaTTGLILAAVYSLWLYQRVMF 435
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
4-204 4.87e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 38.53  E-value: 4.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187   4 YVLVTLLSSlglGTTLTFASSHWLLAWMGLEINTLAIIPLMTQHHHPRAVEATTKYFLTQATAAALILFASTTNAWLTGT 83
Cdd:PRK06473  110 YSLLLLLNA---GVSGAFLAQDLLLFFLFYELELIPLYLLIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGA 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  84 WHIDnMSNSFAATMTIA-----------ALALKIGLAPVHFWMPEV--------------------MQGLDLF-TGLILS 131
Cdd:PRK06473  187 SSFD-YEPLRSHTLPLStqllllapilvGFGIKIPLVPFHTWLPDAhveastpvsvllagvllklgTYGLLRFgVGLFPE 265

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2745580187 132 TWQKLAPLalliqvapaidpllLTAFGLTSTLVGGWGGLNQTQLRKILAYSSIAHMGWMIVILQYAPHLTLLA 204
Cdd:PRK06473  266 AWVYLAPW--------------LATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSILA 324
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 154-303 4.95e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 38.56  E-value: 4.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 154 LTAFGLTSTLVGGWGGLNQTQLRKILAYSSIAHMGWMIVILQYAPHLTLLALLTYI----FMTSAAFLTLKSMS----TT 225
Cdd:PRK12662  282 FMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSGSISyhfgTT 361

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2745580187 226 KVSTLATAWSKNPVLATTTALMLLSLGGLPPLTGFMPKLLVLQELTKQHLPLTATIMALAALLSLYFYLRLCYAMTLT 303
Cdd:PRK12662  362 KLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKIVEALYFE 439
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
18-192 5.11e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 38.53  E-value: 5.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  18 TLTFASSHWLL---AWM--GLEINTLaiipLMTQHHHPRAVEATTKYFLTQATAAALILFASTTNAWLTGTWHIDNM--- 89
Cdd:PRK08168  114 HLLVLSDHLLVliaAWAaiSLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLSALwah 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187  90 --------SNSFAATMTIAALALKIGLAPVHFWMPEVMQGLD-----LFTGLI-LSTWQKLAPLALLIQVAPAIdpLLLT 155
Cdd:PRK08168  190 laaqgaspSLQAAALLLVLAVILKTAQLPVHGWLIQVMEAPTpvsalLHAGVVnLGGFVLIRFAPLLEQAPPAR--WLLV 267

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 2745580187 156 AFGLTSTLVGGWGGLNQTQLRKILAYSSIAHMGWMIV 192
Cdd:PRK08168  268 LVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLL 304
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 101-214 7.05e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 38.11  E-value: 7.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 101 ALALKIGLAPVHFWMPEV-----MQGLDLFTGLILstwqKLA-------PLALLIQVAPAIDPLLLTaFGLTSTLVGGWG 168
Cdd:MTH00217  215 SLAIKIPKIPFHIWLPQAhveapVAGSVILAGVLL----KLGgygfirfSWPLLPEASEYFSPLIQT-LSLLAIIYGSLT 289

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 2745580187 169 GLNQTQLRKILAYSSIAHMGwmIVILQYAPHlTLLALLTYIFMTSA 214
Cdd:MTH00217  290 TCRQVDLKRIIAYSSVAHMG--LVTLGIFSH-TIQGLVAAIFLMLA 332
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-194 7.16e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 37.98  E-value: 7.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745580187 101 ALALKIGLAPVHFWMPEV-----MQGLDLFTGLILS---------TWQKLaPLALLiQVAPAIdplllTAFGLTSTLVGG 166
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKlggyglvrlSWPIL-PLGAQ-NLAPAV-----IAMGIVGIVYGS 311

                          90       100
                  ....*....|....*....|....*...
gi 2745580187 167 WGGLNQTQLRKILAYSSIAHMGWMIVIL 194
Cdd:MTH00226  312 FATCRQIDVKRLVAYSSVAHMGLVSITL 339
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH