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Conserved domains on  [gi|2796906975|ref|WP_373293700|]
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MULTISPECIES: hypothetical protein [Actinomadura]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ArsR super family cl43222
DNA-binding transcriptional regulator, ArsR family [Transcription];
24-44 1.64e-03

DNA-binding transcriptional regulator, ArsR family [Transcription];


The actual alignment was detected with superfamily member COG0640:

Pssm-ID: 440405 [Multi-domain]  Cd Length: 92  Bit Score: 34.09  E-value: 1.64e-03
                         10        20
                 ....*....|....*....|.
gi 2796906975 24 ELARVFKALSDPVRLRLLTLI 44
Cdd:COG0640    9 ELAELFKALADPTRLRILRLL 29
 
Name Accession Description Interval E-value
ArsR COG0640
DNA-binding transcriptional regulator, ArsR family [Transcription];
24-44 1.64e-03

DNA-binding transcriptional regulator, ArsR family [Transcription];


Pssm-ID: 440405 [Multi-domain]  Cd Length: 92  Bit Score: 34.09  E-value: 1.64e-03
                         10        20
                 ....*....|....*....|.
gi 2796906975 24 ELARVFKALSDPVRLRLLTLI 44
Cdd:COG0640    9 ELAELFKALADPTRLRILRLL 29
repress_SdpR NF033789
autorepressor SdpR family transcription factor; Transcription factors in the family of the ...
 28-43 7.66e-03

autorepressor SdpR family transcription factor; Transcription factors in the family of the sporulation delaying system autorepressor SdpR (of Bacillus subtilis) resemble metalloregulatory transcriptional repressors such as ArsR, SmtB, CadX, ZiaR, etc., but may lack the key metal-binding residues.


Pssm-ID: 411369 [Multi-domain]  Cd Length: 79  Bit Score: 32.00  E-value: 7.66e-03
                         10
                 ....*....|....*.
gi 2796906975 28 VFKALSDPVRLRLLTL 43
Cdd:NF033789   1 TFKALSDPTRREILEL 16
 
Name Accession Description Interval E-value
ArsR COG0640
DNA-binding transcriptional regulator, ArsR family [Transcription];
24-44 1.64e-03

DNA-binding transcriptional regulator, ArsR family [Transcription];


Pssm-ID: 440405 [Multi-domain]  Cd Length: 92  Bit Score: 34.09  E-value: 1.64e-03
                         10        20
                 ....*....|....*....|.
gi 2796906975 24 ELARVFKALSDPVRLRLLTLI 44
Cdd:COG0640    9 ELAELFKALADPTRLRILRLL 29
repress_SdpR NF033789
autorepressor SdpR family transcription factor; Transcription factors in the family of the ...
 28-43 7.66e-03

autorepressor SdpR family transcription factor; Transcription factors in the family of the sporulation delaying system autorepressor SdpR (of Bacillus subtilis) resemble metalloregulatory transcriptional repressors such as ArsR, SmtB, CadX, ZiaR, etc., but may lack the key metal-binding residues.


Pssm-ID: 411369 [Multi-domain]  Cd Length: 79  Bit Score: 32.00  E-value: 7.66e-03
                         10
                 ....*....|....*.
gi 2796906975 28 VFKALSDPVRLRLLTL 43
Cdd:NF033789   1 TFKALSDPTRREILEL 16
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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