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PD-(D/E)XK nuclease family protein [Parabacteroides distasonis]
Protein Classification
PD-(D/E)XK nuclease family protein ( domain architecture ID 11467507 )
PD-(D/E)XK nuclease family protein similar to ATP-dependent helicase/deoxyribonuclease subunit B (AddB), part of a heterodimer that acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease
List of domain hits
Name
Accession
Description
Interval
E-value
AddB
COG3857 ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];
117-958
2.65e-71
ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];
Pssm-ID: 443066 [Multi-domain]
Cd Length: 1019
Bit Score: 255.83
E-value: 2.65e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 117 RML FSNV td L R E IENDFDFLSDEQ ----- I AAIRSFWSSFYPR G D TP NQ - QQFLAVW ---- QV L YDL YE EFRAT LA AEGK 186
Cdd:COG3857 87 RML LRKI -- L E E HKDELKVFARAA dkpgf I EQLAELITELKRY G I TP ED l EEAAELL kekl RD L ALI YE AYEEK LA GRYI 164
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 187 GY E g MIF R EVV E SM E rg E S PD L PYEQ I VFV G LNALSVS E EHF L AQ L Q K R ---------- EIADFYWDYVSDKV ------- 249
Cdd:COG3857 165 DS E - DLL R LLA E KL E -- K S EF L EGAE I YID G FTDFTPQ E LEL L EA L L K K akevtitltl DPDELDLFSATGET yerllel 241
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 250 - TDPDNKASYFV S RN L KSFPSSMKLP P E E KVKTE IE V I GIPSGIGQAKH V YTLLSDWCK E AEMSSEE alr T AV ILP D EHL 328
Cdd:COG3857 242 a KENGVEVEFKK S PE L AHLERNLFAY P P E EEPEG IE I I EAANRRAEVEA V AREIRRLVR E EGYRYRD --- I AV VVR D LEA 318
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 329 LI P VLNAIPEQIR - RINVTMGY PL AGT P vas L I E Y IL A L qkn VRYIDR N pl F YFR DV LPV L NHRYILST S P E I I SS L VKE 407
Cdd:COG3857 319 YA P LIERVFAEYG i PYFIDEKR PL SHH P --- L V E L IL S L --- LELVRS N -- F RYE DV FRL L KTGLLRPL S R E E I DR L ENY 390
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 408 ITENN ------------- KIYISHT E L E KTPL L EI L FTPVTG -------------- V EAFSDY L IKV LEEL NKVMSALSD 460
Cdd:COG3857 391 VLAYG irgrrwlerylee EEELTDE E E E DLER L NE L RDRLLE pllplrerlkkakt V REWAEA L YEF LEEL GVPEKLEEW 470
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 461 E E E E D A PQRTNDL E Q E FIFHYFTTV - NRMK EV MK D A ri EMKIDT F F R L L KRVTDTI T IPFHGEP L SGL Q IM G VLET R A LD 539
Cdd:COG3857 471 R E A E E A GDLEEAR E H E QAWNALIEL l DELV EV LG D E -- KLSLEE F L R I L ESGLEEL T FGLIPPS L DQV Q VG G LDRA R G LD 548
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 540 F DRLII L SM NEG I FP Q R KAANSFIPYNL R R ----- G FG L - PT YEHQDSVWAYH FYR LIE RAS - HVS L L Y DTRSNGLQTGE 612
Cdd:COG3857 549 F KAVFV L GL NEG V FP A R PREDGLLSDEE R E rlnel G LE L p PT SRERLLEERFL FYR ALT RAS e RLY L S Y PLADEEGKALL 628
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 613 V S RFVHQ L HYHYEVPMRDK L VVYNVSSSK TP ------- PL A VPKR E DVMRRL D A Y R kg GSKAI S A S AIN TY LD CP LK F YF 685
Cdd:COG3857 629 P S PLIDR L RELFPELEERS L LEEELEYIG TP esalsel AA A LRQL E LAPLWW D V Y K -- WLLKL S V S RLE TY AA CP FQ F FL 706
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 686 SVVEGIR ee E EVSETIESDVF G SIL H K V M E EL YK PFQGKMVTVDL L KAIRKD t A LL TG A IARAFASEFFK tev VRSLTGQ 765
Cdd:COG3857 707 RYGLKLK -- E REEYELDAPDR G TLF H A V L E RF YK ELKEEGLDWAD L SDEELE - E LL EE A VEELAPELQNG --- ILLSSAR 780
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 766 NYLIG E MIRKYV --- EKI LE RDGKLTP F VYIES E RKI --- N GL ---- IS L SDHSE IRL K G F IDR V D EVLDA --- I RIIDY 832
Cdd:COG3857 781 YRYLL E RLKRLL kra RRW LE EEARRSG F EPVAL E LSF gpe G GL pple LE L PNGRK IRL R G R IDR I D RLESD gry L RIIDY 860
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 833 KSGS gt TT F s SIESLFNKEE kdrakav M Q VFM Y cw MY A H L TENK GK TIQ P - G IY Y VR ------------------- S L FA 892
Cdd:COG3857 861 KSGS -- KK F - DLDDVYYGLA ------- L Q LPL Y -- LD A A L ENLE GK EAE P a G AL Y FH lknpklkakkplkklkmkg L L LD 928
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2796580527 893 DP FDPSVYHRIER G -- K SE KV --- E D F SGYAQAFE E G L RGCLD EI FNPEI --- P F t Q T PTGK AC S YCP F K G IC G 958
Cdd:COG3857 929 DP EVLEIIPLKKD G sf K NS KV lse E E F EELLDHVR E L L KEAGE EI LAGDF ain P Y - R T KDRT AC Q YCP Y K S IC R 1001
Name
Accession
Description
Interval
E-value
AddB
COG3857 ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];
117-958
2.65e-71
ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];
Pssm-ID: 443066 [Multi-domain]
Cd Length: 1019
Bit Score: 255.83
E-value: 2.65e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 117 RML FSNV td L R E IENDFDFLSDEQ ----- I AAIRSFWSSFYPR G D TP NQ - QQFLAVW ---- QV L YDL YE EFRAT LA AEGK 186
Cdd:COG3857 87 RML LRKI -- L E E HKDELKVFARAA dkpgf I EQLAELITELKRY G I TP ED l EEAAELL kekl RD L ALI YE AYEEK LA GRYI 164
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 187 GY E g MIF R EVV E SM E rg E S PD L PYEQ I VFV G LNALSVS E EHF L AQ L Q K R ---------- EIADFYWDYVSDKV ------- 249
Cdd:COG3857 165 DS E - DLL R LLA E KL E -- K S EF L EGAE I YID G FTDFTPQ E LEL L EA L L K K akevtitltl DPDELDLFSATGET yerllel 241
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 250 - TDPDNKASYFV S RN L KSFPSSMKLP P E E KVKTE IE V I GIPSGIGQAKH V YTLLSDWCK E AEMSSEE alr T AV ILP D EHL 328
Cdd:COG3857 242 a KENGVEVEFKK S PE L AHLERNLFAY P P E EEPEG IE I I EAANRRAEVEA V AREIRRLVR E EGYRYRD --- I AV VVR D LEA 318
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 329 LI P VLNAIPEQIR - RINVTMGY PL AGT P vas L I E Y IL A L qkn VRYIDR N pl F YFR DV LPV L NHRYILST S P E I I SS L VKE 407
Cdd:COG3857 319 YA P LIERVFAEYG i PYFIDEKR PL SHH P --- L V E L IL S L --- LELVRS N -- F RYE DV FRL L KTGLLRPL S R E E I DR L ENY 390
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 408 ITENN ------------- KIYISHT E L E KTPL L EI L FTPVTG -------------- V EAFSDY L IKV LEEL NKVMSALSD 460
Cdd:COG3857 391 VLAYG irgrrwlerylee EEELTDE E E E DLER L NE L RDRLLE pllplrerlkkakt V REWAEA L YEF LEEL GVPEKLEEW 470
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 461 E E E E D A PQRTNDL E Q E FIFHYFTTV - NRMK EV MK D A ri EMKIDT F F R L L KRVTDTI T IPFHGEP L SGL Q IM G VLET R A LD 539
Cdd:COG3857 471 R E A E E A GDLEEAR E H E QAWNALIEL l DELV EV LG D E -- KLSLEE F L R I L ESGLEEL T FGLIPPS L DQV Q VG G LDRA R G LD 548
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 540 F DRLII L SM NEG I FP Q R KAANSFIPYNL R R ----- G FG L - PT YEHQDSVWAYH FYR LIE RAS - HVS L L Y DTRSNGLQTGE 612
Cdd:COG3857 549 F KAVFV L GL NEG V FP A R PREDGLLSDEE R E rlnel G LE L p PT SRERLLEERFL FYR ALT RAS e RLY L S Y PLADEEGKALL 628
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 613 V S RFVHQ L HYHYEVPMRDK L VVYNVSSSK TP ------- PL A VPKR E DVMRRL D A Y R kg GSKAI S A S AIN TY LD CP LK F YF 685
Cdd:COG3857 629 P S PLIDR L RELFPELEERS L LEEELEYIG TP esalsel AA A LRQL E LAPLWW D V Y K -- WLLKL S V S RLE TY AA CP FQ F FL 706
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 686 SVVEGIR ee E EVSETIESDVF G SIL H K V M E EL YK PFQGKMVTVDL L KAIRKD t A LL TG A IARAFASEFFK tev VRSLTGQ 765
Cdd:COG3857 707 RYGLKLK -- E REEYELDAPDR G TLF H A V L E RF YK ELKEEGLDWAD L SDEELE - E LL EE A VEELAPELQNG --- ILLSSAR 780
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 766 NYLIG E MIRKYV --- EKI LE RDGKLTP F VYIES E RKI --- N GL ---- IS L SDHSE IRL K G F IDR V D EVLDA --- I RIIDY 832
Cdd:COG3857 781 YRYLL E RLKRLL kra RRW LE EEARRSG F EPVAL E LSF gpe G GL pple LE L PNGRK IRL R G R IDR I D RLESD gry L RIIDY 860
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 833 KSGS gt TT F s SIESLFNKEE kdrakav M Q VFM Y cw MY A H L TENK GK TIQ P - G IY Y VR ------------------- S L FA 892
Cdd:COG3857 861 KSGS -- KK F - DLDDVYYGLA ------- L Q LPL Y -- LD A A L ENLE GK EAE P a G AL Y FH lknpklkakkplkklkmkg L L LD 928
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2796580527 893 DP FDPSVYHRIER G -- K SE KV --- E D F SGYAQAFE E G L RGCLD EI FNPEI --- P F t Q T PTGK AC S YCP F K G IC G 958
Cdd:COG3857 929 DP EVLEIIPLKKD G sf K NS KV lse E E F EELLDHVR E L L KEAGE EI LAGDF ain P Y - R T KDRT AC Q YCP Y K S IC R 1001
PDDEXK_1
pfam12705 PD-(D/E)XK nuclease superfamily; Members of this family belong to the PD-(D/E)XK nuclease ...
667-957
8.48e-40
PD-(D/E)XK nuclease superfamily; Members of this family belong to the PD-(D/E)XK nuclease superfamily
Pssm-ID: 432731 [Multi-domain]
Cd Length: 250
Bit Score: 147.68
E-value: 8.48e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 667 AI S A S AIN TYL D CPL K F YFSVVE G I R eeee VS E TIESDVF G SIL H KVM E EL Y KP fqgkmvt VD L LKA ir KDTA LL TGAIA 746
Cdd:pfam12705 1 RL S P S RLE TYL T CPL R F FLRYLL G L R ---- ED E ELDAPDL G TLV H AAL E RF Y RW ------- GR L PEE -- DLEE LL QALLE 67
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 747 RAFASEFFKT E V vrs L TGQNY L I G --- EMIRKYVEKIL E RDGKLTP F VYIES E RKIN G lislsdh SEI RL K G F IDRVD - E 822
Cdd:pfam12705 68 ELWPELGLQS E I --- L PRLPW L A G rlr RRLERMLRRLA E WLRARRG F RPVAV E LGFG G ------- TTV RL V G R IDRVD l D 137
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 823 VLDAI RIIDYK S GS GTT tfssieslfn KE E KDRAKAVM Q VFM Y CWMY A HLTENK G KTI qp G IY Y V R SLFADPF D PS V YHR 902
Cdd:pfam12705 138 GEGYL RIIDYK T GS APP ---------- QS E DLDLYEGL Q LLL Y LLAL A AGEKAL G GPA -- G AL Y L R LDDPLKK D EE V VEP 205
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 2796580527 903 IE rgks EKVED F sgya Q A FEEG LR GCLD EI FNP E I P FTQ tpt GK A C S YCP FKG IC 957
Cdd:pfam12705 206 MV ---- LTEDE F ---- D A LLQE LR ELAE EI LAG E F P ARP --- GK K C R YCP YRS IC 249
TIGR03623
TIGR03623 probable DNA repair protein; Members of this protein family are bacterial proteins of about ...
482-839
2.72e-17
probable DNA repair protein; Members of this protein family are bacterial proteins of about 900 amino acids in length. Members show extended homology to proteins in TIGR02786, the AddB protein of double-strand break repair via homologous recombination. Members of this family, therefore, may be DNA repair proteins.
Pssm-ID: 274682 [Multi-domain]
Cd Length: 874
Bit Score: 87.02
E-value: 2.72e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 482 FTT V NRMK E VMKD - A RIE ----- MKIDTFF RLL KR - VTD T ITI P FHG E pl SGL Q IM G V LE TRA L D FD R L IILSMNEGIF P 554
Cdd:TIGR03623 409 YQA V KAWE E LLAE f A ALD lvspa LTFSEAL RLL RQ l AAE T LFQ P ETP E -- API Q VL G L LE AAG L Q FD A L WVMGLTDEQW P 486
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 555 QRKAA N S F I P YN L R R GF G L P tye H QDSV ---- W A YHFY - RL IER A SH V SLL Y d T R SN G LQTGEV S RFVHQ L HYHY E V --- 626
Cdd:TIGR03623 487 APPRP N P F L P LA L Q R AV G M P --- H ASAE reld Y A RQVT q RL LKS A PE V VFS Y - P R RD G DRELRP S PLIAH L PLKA E E dae 562
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 627 --- PMRDKLV V YNV S S ------ SKT PPLA VPK R edv MR rldayrk GG SKAIS A S A I ntyld CP LKFYFSVVE G I R EE EE V 697
Cdd:TIGR03623 563 lad YQDLAAA V AAG S R levldd AQA PPLA AGE R --- IS ------- GG TGLLK A Q A A ----- CP FRAFAQHRL G A R AL EE P 627
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 698 SETIESDVF G SIL H K V M E ELYKPFQGK mvtv DL L K A IRKDT -- A L LTG AI AR A F A S E FFKTE vv RSLTGQ n Y L IG E MI R - 774
Cdd:TIGR03623 628 VDGLDALER G TLV H R V L E LFWERLKNQ ---- EA L N A LDEAE le Q L IAE AI EE A L A E E RARHS -- QTFPER - F L EL E QE R l 700
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2796580527 775 - KYVEKI LE RDG K LT PF VYIES E R ---- K I N GL islsdhsei R LK GF IDR V D EVL D AI R - IIDYK S G SGTT 839
Cdd:TIGR03623 701 l QLLLEW LE LER K RP PF EVVAT E Q nhsi E I G GL --------- E LK LR IDR I D RLA D GS R l IIDYK T G APSV 762
Name
Accession
Description
Interval
E-value
AddB
COG3857 ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];
117-958
2.65e-71
ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];
Pssm-ID: 443066 [Multi-domain]
Cd Length: 1019
Bit Score: 255.83
E-value: 2.65e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 117 RML FSNV td L R E IENDFDFLSDEQ ----- I AAIRSFWSSFYPR G D TP NQ - QQFLAVW ---- QV L YDL YE EFRAT LA AEGK 186
Cdd:COG3857 87 RML LRKI -- L E E HKDELKVFARAA dkpgf I EQLAELITELKRY G I TP ED l EEAAELL kekl RD L ALI YE AYEEK LA GRYI 164
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 187 GY E g MIF R EVV E SM E rg E S PD L PYEQ I VFV G LNALSVS E EHF L AQ L Q K R ---------- EIADFYWDYVSDKV ------- 249
Cdd:COG3857 165 DS E - DLL R LLA E KL E -- K S EF L EGAE I YID G FTDFTPQ E LEL L EA L L K K akevtitltl DPDELDLFSATGET yerllel 241
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 250 - TDPDNKASYFV S RN L KSFPSSMKLP P E E KVKTE IE V I GIPSGIGQAKH V YTLLSDWCK E AEMSSEE alr T AV ILP D EHL 328
Cdd:COG3857 242 a KENGVEVEFKK S PE L AHLERNLFAY P P E EEPEG IE I I EAANRRAEVEA V AREIRRLVR E EGYRYRD --- I AV VVR D LEA 318
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 329 LI P VLNAIPEQIR - RINVTMGY PL AGT P vas L I E Y IL A L qkn VRYIDR N pl F YFR DV LPV L NHRYILST S P E I I SS L VKE 407
Cdd:COG3857 319 YA P LIERVFAEYG i PYFIDEKR PL SHH P --- L V E L IL S L --- LELVRS N -- F RYE DV FRL L KTGLLRPL S R E E I DR L ENY 390
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 408 ITENN ------------- KIYISHT E L E KTPL L EI L FTPVTG -------------- V EAFSDY L IKV LEEL NKVMSALSD 460
Cdd:COG3857 391 VLAYG irgrrwlerylee EEELTDE E E E DLER L NE L RDRLLE pllplrerlkkakt V REWAEA L YEF LEEL GVPEKLEEW 470
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 461 E E E E D A PQRTNDL E Q E FIFHYFTTV - NRMK EV MK D A ri EMKIDT F F R L L KRVTDTI T IPFHGEP L SGL Q IM G VLET R A LD 539
Cdd:COG3857 471 R E A E E A GDLEEAR E H E QAWNALIEL l DELV EV LG D E -- KLSLEE F L R I L ESGLEEL T FGLIPPS L DQV Q VG G LDRA R G LD 548
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 540 F DRLII L SM NEG I FP Q R KAANSFIPYNL R R ----- G FG L - PT YEHQDSVWAYH FYR LIE RAS - HVS L L Y DTRSNGLQTGE 612
Cdd:COG3857 549 F KAVFV L GL NEG V FP A R PREDGLLSDEE R E rlnel G LE L p PT SRERLLEERFL FYR ALT RAS e RLY L S Y PLADEEGKALL 628
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 613 V S RFVHQ L HYHYEVPMRDK L VVYNVSSSK TP ------- PL A VPKR E DVMRRL D A Y R kg GSKAI S A S AIN TY LD CP LK F YF 685
Cdd:COG3857 629 P S PLIDR L RELFPELEERS L LEEELEYIG TP esalsel AA A LRQL E LAPLWW D V Y K -- WLLKL S V S RLE TY AA CP FQ F FL 706
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 686 SVVEGIR ee E EVSETIESDVF G SIL H K V M E EL YK PFQGKMVTVDL L KAIRKD t A LL TG A IARAFASEFFK tev VRSLTGQ 765
Cdd:COG3857 707 RYGLKLK -- E REEYELDAPDR G TLF H A V L E RF YK ELKEEGLDWAD L SDEELE - E LL EE A VEELAPELQNG --- ILLSSAR 780
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 766 NYLIG E MIRKYV --- EKI LE RDGKLTP F VYIES E RKI --- N GL ---- IS L SDHSE IRL K G F IDR V D EVLDA --- I RIIDY 832
Cdd:COG3857 781 YRYLL E RLKRLL kra RRW LE EEARRSG F EPVAL E LSF gpe G GL pple LE L PNGRK IRL R G R IDR I D RLESD gry L RIIDY 860
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 833 KSGS gt TT F s SIESLFNKEE kdrakav M Q VFM Y cw MY A H L TENK GK TIQ P - G IY Y VR ------------------- S L FA 892
Cdd:COG3857 861 KSGS -- KK F - DLDDVYYGLA ------- L Q LPL Y -- LD A A L ENLE GK EAE P a G AL Y FH lknpklkakkplkklkmkg L L LD 928
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2796580527 893 DP FDPSVYHRIER G -- K SE KV --- E D F SGYAQAFE E G L RGCLD EI FNPEI --- P F t Q T PTGK AC S YCP F K G IC G 958
Cdd:COG3857 929 DP EVLEIIPLKKD G sf K NS KV lse E E F EELLDHVR E L L KEAGE EI LAGDF ain P Y - R T KDRT AC Q YCP Y K S IC R 1001
COG3893
COG3893 Inactivated superfamily I helicase [Replication, recombination and repair];
1-840
1.22e-61
Inactivated superfamily I helicase [Replication, recombination and repair];
Pssm-ID: 443100 [Multi-domain]
Cd Length: 965
Bit Score: 226.98
E-value: 1.22e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 1 MK PFL YQV A SLFYEKWGA --- EVS R LAFVF P N RR TGLFFQKYLSEVADTP L FS P T I LTIN DL FIQLSGKQ --- SADRISM 74
Cdd:COG3893 9 GA PFL DAL A AGLLARLAG dpl ALA R VTILL P T RR AARALREAFLRLLGRA L LL P R I RPLG DL DEDELLLD lpp AISPLER 88
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 75 LFT L YDIYI R -- QSGSTETFDEF L YWGEM L LNDF D DIDKYMANARM L FSN V T D lreiendf D FLSDE Q IA airsfwssfy 152
Cdd:COG3893 89 RLL L ARLVR R wa DALVPASPADA L DLADS L ARLM D ELETEGVDLEA L ADL V P D -------- D LAGHW Q RT ---------- 150
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 153 prgdtpnq QQ FL AV wqvlyd LY E EFR A T LA AE G KGYEGMIF R EVV E s MERGESPDL P YEQIVFV G LNALSVSEEHF LA QL 232
Cdd:COG3893 151 -------- LD FL KI ------ VT E AWP A I LA ER G LIDPAARR R ALL E - ALAARWRAA P AGPVIAA G STGSTPATARL LA AV 215
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 233 QKREIADFYWDYV s D KVT D PDNK A SYFVSR --- N LK SFPSSMKLPP E E kvkte IEVI G IPSG ------- IGQ A KHVYTLL 302
Cdd:COG3893 216 ARLPQGAVVLPGL - D LDL D EAAW A ALAEDH pqy G LK RLLDRLGVTR E D ----- VRPW G ATPA lpararl LSE A LRPAETT 289
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 303 SD W CK ------------ EA EMSS EEAL --------------- RT A VIL PD EH L LIP V LNAIPEQIRRINVTM G Y PL AG TP 355
Cdd:COG3893 290 DA W RD lgaaalagltli EA ADPE EEAL aialalrealeepgr TA A LVT PD RA L ARR V AAELERWGIEVDDSA G W PL ST TP 369
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 356 VAS L IEYI L A L Q knvryid RN P l FYFRDV L PV L N H RYILSTSP ----------- E I ----------- ISS L VKEITENNK 413
Cdd:COG3893 370 AGA L LRLL L E L A ------- AE P - LAPVAL L AL L K H PLVRLGLG rgdhrravral E L alrrggrpapg LAG L RAALARARP 441
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 414 IYISHTE ----- LE K -- T PLL EILFTPVTGVEAFSDY L IKV LE E L nkvms ALSD E EE EDA PQRTNDL E Q efifh YFTTVN 486
Cdd:COG3893 442 DDAEAAA alldr LE A al A PLL ALFAAGKRPLADWLAA L RAL LE A L ----- GADE E GG EDA LWAGEAG E A ----- LLELLA 511
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 487 RMKEV m KD A RIEMKIDTFFR LL KRVTDTI T IPFH G E P LSGL QI M G V LE T R ALD FD RL I ILSM NEG IF P QRKAANSFIPYN 566
Cdd:COG3893 512 ELAAA - AG A GGPLSAAEYPA LL RALLEGT T VRPP G G P HPRV QI L G L LE A R LQR FD AV I LGGL NEG VW P PAPRPDPWLSRP 590
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 567 L RR GF GLPT Y E HQDSVW A YH F YRLI e R A SH V S L LYDT RS N G l QTGEV SR FVHQ L ---- HYHYEVP M RDKLVVYNVS --- S 639
Cdd:COG3893 591 M RR AL GLPT P E RRIGLA A HD F AQAL - G A PE V V L SRAR RS D G - APTVP SR WLQR L eall GGAALAA M GARWLAWARA ldr P 668
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 640 SKTP P L A V P K - RED V M RR L dayrkggs KAI S ASAINTYL D C P LKF Y FSVVEGIREEEEVSETIESDVF G SIL H KVM E ELY 718
Cdd:COG3893 669 APVA P A A R P A p KPP V A RR P -------- RLS S VTIETLLR D P P YAY Y ARRLLLLLLLPPLADPPAAARG G LLH H ALL E FFE 740
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 719 KPFQG kmvtvdllk AIRKDT A L L TG A I A R A FASEFFKTEVVRSLTGQNYLIGEMIRKYV E K il E R DGKLTPFVYI E SE R k 798
Cdd:COG3893 741 REPPA --------- LPADAA A A L LL A L A E A LLALAAAPAAAAAWWARRLRRAAAFAAAE E E -- R R RALAREEAEE E GG R - 808
890 900 910 920
....*....|....*....|....*....|....*....|..
gi 2796580527 799 ing L IS L SDHSEIR L KGFIDRV D EVLDAIRII D YKSGS G TTT 840
Cdd:COG3893 809 --- L AL L EGGLLLL L RRRDRDD D DGDGDGGDD D KTTTT G PPA 847
PDDEXK_1
pfam12705 PD-(D/E)XK nuclease superfamily; Members of this family belong to the PD-(D/E)XK nuclease ...
667-957
8.48e-40
PD-(D/E)XK nuclease superfamily; Members of this family belong to the PD-(D/E)XK nuclease superfamily
Pssm-ID: 432731 [Multi-domain]
Cd Length: 250
Bit Score: 147.68
E-value: 8.48e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 667 AI S A S AIN TYL D CPL K F YFSVVE G I R eeee VS E TIESDVF G SIL H KVM E EL Y KP fqgkmvt VD L LKA ir KDTA LL TGAIA 746
Cdd:pfam12705 1 RL S P S RLE TYL T CPL R F FLRYLL G L R ---- ED E ELDAPDL G TLV H AAL E RF Y RW ------- GR L PEE -- DLEE LL QALLE 67
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 747 RAFASEFFKT E V vrs L TGQNY L I G --- EMIRKYVEKIL E RDGKLTP F VYIES E RKIN G lislsdh SEI RL K G F IDRVD - E 822
Cdd:pfam12705 68 ELWPELGLQS E I --- L PRLPW L A G rlr RRLERMLRRLA E WLRARRG F RPVAV E LGFG G ------- TTV RL V G R IDRVD l D 137
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 823 VLDAI RIIDYK S GS GTT tfssieslfn KE E KDRAKAVM Q VFM Y CWMY A HLTENK G KTI qp G IY Y V R SLFADPF D PS V YHR 902
Cdd:pfam12705 138 GEGYL RIIDYK T GS APP ---------- QS E DLDLYEGL Q LLL Y LLAL A AGEKAL G GPA -- G AL Y L R LDDPLKK D EE V VEP 205
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 2796580527 903 IE rgks EKVED F sgya Q A FEEG LR GCLD EI FNP E I P FTQ tpt GK A C S YCP FKG IC 957
Cdd:pfam12705 206 MV ---- LTEDE F ---- D A LLQE LR ELAE EI LAG E F P ARP --- GK K C R YCP YRS IC 249
Slr0479
COG2887 RecB family exonuclease [Replication, recombination and repair];
666-957
2.08e-39
RecB family exonuclease [Replication, recombination and repair];
Pssm-ID: 442133 [Multi-domain]
Cd Length: 248
Bit Score: 146.72
E-value: 2.08e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 666 KAI S A S A I N T Y L D CPL KF Y FSVVE G I R EEE E VSETIE sd VF G SIL H K V M E EL YK PFQGKM vtvdllkairk DTAL L TGAI 745
Cdd:COG2887 1 RRL S P S R I E T L L R CPL RY Y ARYIL G L R DPL E PPPDAA -- DR G TLV H A V L E RF YK LPADEL ----------- PAEE L LALL 67
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 746 AR A F A SEF F KTEVVRS L tgqn Y L ig E MIRKYV E KI LE RDGKLTPFVYIES E RKINGLIS lsdh SEI RL K G F IDR V D EVL D 825
Cdd:COG2887 68 EE A W A ELG F EDPWAAA L ---- W L -- E RAERLL E AF LE WERAPAGLEPVAV E VEFELELP ---- GGV RL R G R IDR I D RLP D 137
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 826 - AIRII DYK S G S gtttfssieslf NKEE KD R A KAVM Q VFM Y CWMYAHLT E NKGKT i QPGIY Y VRS L fadpfdpsvyhrie 904
Cdd:COG2887 138 g RLVVV DYK T G K ------------ APST KD E A GEDP Q LAL Y ALALERGF E GLVPA - GARLV Y LGD L -------------- 190
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 2796580527 905 r GK SEKVEDFSGYAQAF EE G L RGCLDE I FN PE I PF TQT P TGKA C S YC PFKGI C 957
Cdd:COG2887 191 - GK KKVLDPLEEELEEA EE R L EELAAA I AD PE G PF PAR P NPPL C R YC DYRHL C 242
TIGR03623
TIGR03623 probable DNA repair protein; Members of this protein family are bacterial proteins of about ...
482-839
2.72e-17
probable DNA repair protein; Members of this protein family are bacterial proteins of about 900 amino acids in length. Members show extended homology to proteins in TIGR02786, the AddB protein of double-strand break repair via homologous recombination. Members of this family, therefore, may be DNA repair proteins.
Pssm-ID: 274682 [Multi-domain]
Cd Length: 874
Bit Score: 87.02
E-value: 2.72e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 482 FTT V NRMK E VMKD - A RIE ----- MKIDTFF RLL KR - VTD T ITI P FHG E pl SGL Q IM G V LE TRA L D FD R L IILSMNEGIF P 554
Cdd:TIGR03623 409 YQA V KAWE E LLAE f A ALD lvspa LTFSEAL RLL RQ l AAE T LFQ P ETP E -- API Q VL G L LE AAG L Q FD A L WVMGLTDEQW P 486
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 555 QRKAA N S F I P YN L R R GF G L P tye H QDSV ---- W A YHFY - RL IER A SH V SLL Y d T R SN G LQTGEV S RFVHQ L HYHY E V --- 626
Cdd:TIGR03623 487 APPRP N P F L P LA L Q R AV G M P --- H ASAE reld Y A RQVT q RL LKS A PE V VFS Y - P R RD G DRELRP S PLIAH L PLKA E E dae 562
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 627 --- PMRDKLV V YNV S S ------ SKT PPLA VPK R edv MR rldayrk GG SKAIS A S A I ntyld CP LKFYFSVVE G I R EE EE V 697
Cdd:TIGR03623 563 lad YQDLAAA V AAG S R levldd AQA PPLA AGE R --- IS ------- GG TGLLK A Q A A ----- CP FRAFAQHRL G A R AL EE P 627
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 698 SETIESDVF G SIL H K V M E ELYKPFQGK mvtv DL L K A IRKDT -- A L LTG AI AR A F A S E FFKTE vv RSLTGQ n Y L IG E MI R - 774
Cdd:TIGR03623 628 VDGLDALER G TLV H R V L E LFWERLKNQ ---- EA L N A LDEAE le Q L IAE AI EE A L A E E RARHS -- QTFPER - F L EL E QE R l 700
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2796580527 775 - KYVEKI LE RDG K LT PF VYIES E R ---- K I N GL islsdhsei R LK GF IDR V D EVL D AI R - IIDYK S G SGTT 839
Cdd:TIGR03623 701 l QLLLEW LE LER K RP PF EVVAT E Q nhsi E I G GL --------- E LK LR IDR I D RLA D GS R l IIDYK T G APSV 762
RecB
COG1074 3#-5# helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V) [Replication, ...
706-888
7.70e-04
3#-5# helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440692 [Multi-domain]
Cd Length: 866
Bit Score: 43.41
E-value: 7.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 706 F G SIL H KVM E E L yk P F QG kmv TVD L LK A IRK dt A L LT G AIARAF A SE ------- F FK T EVVRS L TGQNYLIG E M irkyve 778
Cdd:COG1074 714 R G TLV H RLL E H L -- D F SA --- PAE L RA A LAR -- L L AR G GLDEEE A EA laealla F LA T PLLAE L FAAAEVLR E V ------ 780
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 779 kilerdgklt PF VYIESE R KIN GL I slsdhseirl KG F ID R V D E VLDAIR I I DYK SGSGTTTF ssieslfnk EE KDRAKA 858
Cdd:COG1074 781 ---------- PF LLPDLY R GLG GL L ---------- KG R ID L V F E DDGRVY I V DYK TNRLGPDD --------- EE YLPERY 831
170 180 190
....*....|....*....|....*....|
gi 2796580527 859 VM Q VFM Y CWMYAH L T en K G KTIQP G I Y YVR 888
Cdd:COG1074 832 RL Q LAL Y ALALER L L -- P G RPVRA G L Y FTD 859
VWA
pfam00092 von Willebrand factor type A domain;
761-859
9.35e-03
von Willebrand factor type A domain;
Pssm-ID: 459670 [Multi-domain]
Cd Length: 174
Bit Score: 38.02
E-value: 9.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796580527 761 S LT G Q N Y lig E MIRKYVE K IL E R dgkltpfv YIESERKIN - GL ISL S DHS -- E IR L KGFIDR v D E V L D A IRIID Y KS G SG 837
Cdd:pfam00092 11 S IG G D N F --- E KVKEFLK K LV E S -------- LDIGPDGTR v GL VQY S SDV rt E FP L NDYSSK - E E L L S A VDNLR Y LG G GT 78
90 100
....*....|....*....|....*.
gi 2796580527 838 T T T FSSI ---- E S LF NKEEKD R AK A V 859
Cdd:pfam00092 79 T N T GKAL kyal E N LF SSAAGA R PG A P 104
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
