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Conserved domains on  [gi|2796448491|ref|WP_373167060|]
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SusC/RagA family TonB-linked outer membrane protein [Bacteroides koreensis]

Protein Classification

SusC/RagA family TonB-linked outer membrane protein( domain architecture ID 11499350)

SusC/RagA family TonB-linked outer membrane protein might act as a TonB-dependent receptor similar to Bacteroides thetaiotaomicron starch-utilization system protein C (SusC), which mediates transport of starch oligosaccharides from the surface of the outer membrane to the periplasm for subsequent degradation

CATH:  1.25.40.390
Gene Ontology:  GO:0009279|GO:0016020
PubMed:  15111112|28077872|11717282|17965357

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OMP_RagA_SusC TIGR04056
TonB-linked outer membrane protein, SusC/RagA family; This model describes a distinctive clade ...
 27-1043 0e+00

TonB-linked outer membrane protein, SusC/RagA family; This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate]


:

Pssm-ID: 274948 [Multi-domain]  Cd Length: 981  Bit Score: 844.95  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491   27 KSISGTVTDDQGEAVISGTVKVKNGSTGTITDINGKYTLSVPSNATLVFSYIGYITQEFKVSelKSNVLNVVLQSDTKAL 106
Cdd:TIGR04056    1 ITVTGVVVDETGEPLIGASVVVKGTTNGTITDIDGNFSLKVPPGAVLVFSYIGYKTQEVKVK--GQKNLNITLKEDTQEL 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  107 DEVVVVGYGTMRKSDLTGSISTAKGKDMLKAQSFNALDGLKGKVAGVNIFSNTGQPGGESRVIIRGISTINASASPLYVV 186
Cdd:TIGR04056   79 DEVVVVGYGTQKKKSLTGAVSTVKAKELKKVPVSNLSNALQGKVAGVIITQSSGEPGGDAEIWIRGISSFGGNNSPLYVI 158

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  187 DGVVMSN-FELLNPNDIESIEVLKDASSAAIYGARGANGVIMVTTKRGNAGKgVHVSYDGSLSIGKMARKIDVMDANEWM 265
Cdd:TIGR04056  159 DGVPRDNgLSDLNPEDIESISVLKDASATAIYGSRGANGVILITTKRGKEGK-PKISYNAEFGFSTPTRLPEMLNAYEYA 237

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  266 STFKQGLENANEFQGKNFTTDLsqiftDERLFNADGSPKY-NTNWQDEA-SRTAISHNHQISFQRTGEGSSIGAFINYTD 343
Cdd:TIGR04056  238 ELYNEALLNRGSSPPDIYTDEE-----IEAYRNGLDPDLYpNTDWQDEIfKRTAFNQRHNLSVSGGTEKARYYVSLGYYN 312

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  344 QQGILLNSYFKRINAKLAYDDKPTDWLSTSVNLLVNHTWGNR---TSDNPYGQGALRTMIEQLPFLPVKLDGEYTQTNII 420
Cdd:TIGR04056  313 EEGILKNSDYKRYNFRANIDAKLTKTLKLSLNVSGSLSKYNNpggSTSNIWGALMLFPRGTPYSTPPVYSDGYYPAYNSG 392

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  421 NTSSIlnnqtdpnsgkqgfspegvgNPVELLERMQAMQYRTQIFGNAALTFHLMKGLDLKTQFGIDYHNNRDANYTPFTP 500
Cdd:TIGR04056  393 NTSLQ--------------------NPYALLNRGYNENERNRLNGNASLEQKITKGLKLKGTFSYDYSNYKNKKYYKNPY 452

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  501 RPMINQSSE-GAASANNSNSLYWQEETYLTYVKDINKHHINAMAGMSWQEYNYtkfeasdSKYIDDFYGYYNLGSGTNRP 579
Cdd:TIGR04056  453 YYNATGGANnGYYSESNSRSRNYYLEATLNYNRTFGKHNVSALLGYSQQENKS-------SSYGGLLDDLPSLDAGTSDA 525

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  580 SVGNDYDKWAMNSYFLRLAYSYDNKYMATVTGRYDGSSKFGQNNKYAFFPSVGLGWMISNEDFLKD-NSLISKLKLHTSY 658
Cdd:TIGR04056  526 SVSGSDSEYRLQSLFGRATYSYKDRYLLEFNFRYDGSSRFAKGNRWGFFPSVSLGWRISEEKFMKKlKKWLSFLKLRASY 605

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  659 GLTGNSEIGT---YKSLATVSQSNTIIGDALHVVS---YLDNMPNPDLKWEKTGQWDLGFELGLFNNRLNFDISYYYKYT 732
Cdd:TIGR04056  606 GIVGNDNIGDrypYLSLYNLGDGGYNFGTNNGTSVtgiTESRYGNPNLKWEKTKKWNLGLDLGFFNNRLSLTVDYYYKKT 685

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  733 SDLLLDRPVPESTGYSSIMDNIGAVSNRGLDILVTAYPIQTHDFQWTSTLNLGFNKNRVEKLDESasvdpvtgkrqitTD 812
Cdd:TIGR04056  686 KDILQSRSLPSVTGYSSPYANIGKVKNKGVELSLNYRNKIGKDFSWSVRGNFTYNKNKILELDEG-------------AY 752

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  813 GFVGYDMLIREGEELSSFYGYkragIYDGIPSNWDPETMNIPSTIGEKVTYKK-----------REIIGN-GLPDWMGSF 880
Cdd:TIGR04056  753 LPVKYPYISKEGGPIGQIYGY----IADGLFKDDDSPKQTFGNVRPGDIKYKDvngdgkiddddRVPIGYsNTPDLTYGF 828

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  881 INTFNYKGFDLTLDFQFTWGVDVMQ--EYYHSTVARFLTNGIDRLYKEAWHPTlNPSGKEQAIRLNNFGQGANNQADDDW 958
Cdd:TIGR04056  829 GNSFSYKGFDLSALFQGSGGGDVFNdgRGFYPFNGGDWGNVLKIVADNRWTPE-NPNADYPRLSYGDSNNSNNYQASTRW 907

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  959 VCNGSYLRCNMIQLGYTFNPTLIKKIGLSSLRLYANVNNAFLITskDYNGYDPDNSSRLGdnkwganrqfFTYPRPRTFT 1038
Cdd:TIGR04056  908 LEDGSYLRLKNLTLGYTLPKKWLKKIGISNLRVYFSGQNLFTFS--KYKGWDPELQGNDG----------GAYPLQRTFS 975


                   ....*
gi 2796448491 1039 FGLNV 1043
Cdd:TIGR04056  976 FGVNL 980
 
Name Accession Description Interval E-value
OMP_RagA_SusC TIGR04056
TonB-linked outer membrane protein, SusC/RagA family; This model describes a distinctive clade ...
 27-1043 0e+00

TonB-linked outer membrane protein, SusC/RagA family; This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate]


Pssm-ID: 274948 [Multi-domain]  Cd Length: 981  Bit Score: 844.95  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491   27 KSISGTVTDDQGEAVISGTVKVKNGSTGTITDINGKYTLSVPSNATLVFSYIGYITQEFKVSelKSNVLNVVLQSDTKAL 106
Cdd:TIGR04056    1 ITVTGVVVDETGEPLIGASVVVKGTTNGTITDIDGNFSLKVPPGAVLVFSYIGYKTQEVKVK--GQKNLNITLKEDTQEL 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  107 DEVVVVGYGTMRKSDLTGSISTAKGKDMLKAQSFNALDGLKGKVAGVNIFSNTGQPGGESRVIIRGISTINASASPLYVV 186
Cdd:TIGR04056   79 DEVVVVGYGTQKKKSLTGAVSTVKAKELKKVPVSNLSNALQGKVAGVIITQSSGEPGGDAEIWIRGISSFGGNNSPLYVI 158

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  187 DGVVMSN-FELLNPNDIESIEVLKDASSAAIYGARGANGVIMVTTKRGNAGKgVHVSYDGSLSIGKMARKIDVMDANEWM 265
Cdd:TIGR04056  159 DGVPRDNgLSDLNPEDIESISVLKDASATAIYGSRGANGVILITTKRGKEGK-PKISYNAEFGFSTPTRLPEMLNAYEYA 237

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  266 STFKQGLENANEFQGKNFTTDLsqiftDERLFNADGSPKY-NTNWQDEA-SRTAISHNHQISFQRTGEGSSIGAFINYTD 343
Cdd:TIGR04056  238 ELYNEALLNRGSSPPDIYTDEE-----IEAYRNGLDPDLYpNTDWQDEIfKRTAFNQRHNLSVSGGTEKARYYVSLGYYN 312

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  344 QQGILLNSYFKRINAKLAYDDKPTDWLSTSVNLLVNHTWGNR---TSDNPYGQGALRTMIEQLPFLPVKLDGEYTQTNII 420
Cdd:TIGR04056  313 EEGILKNSDYKRYNFRANIDAKLTKTLKLSLNVSGSLSKYNNpggSTSNIWGALMLFPRGTPYSTPPVYSDGYYPAYNSG 392

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  421 NTSSIlnnqtdpnsgkqgfspegvgNPVELLERMQAMQYRTQIFGNAALTFHLMKGLDLKTQFGIDYHNNRDANYTPFTP 500
Cdd:TIGR04056  393 NTSLQ--------------------NPYALLNRGYNENERNRLNGNASLEQKITKGLKLKGTFSYDYSNYKNKKYYKNPY 452

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  501 RPMINQSSE-GAASANNSNSLYWQEETYLTYVKDINKHHINAMAGMSWQEYNYtkfeasdSKYIDDFYGYYNLGSGTNRP 579
Cdd:TIGR04056  453 YYNATGGANnGYYSESNSRSRNYYLEATLNYNRTFGKHNVSALLGYSQQENKS-------SSYGGLLDDLPSLDAGTSDA 525

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  580 SVGNDYDKWAMNSYFLRLAYSYDNKYMATVTGRYDGSSKFGQNNKYAFFPSVGLGWMISNEDFLKD-NSLISKLKLHTSY 658
Cdd:TIGR04056  526 SVSGSDSEYRLQSLFGRATYSYKDRYLLEFNFRYDGSSRFAKGNRWGFFPSVSLGWRISEEKFMKKlKKWLSFLKLRASY 605

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  659 GLTGNSEIGT---YKSLATVSQSNTIIGDALHVVS---YLDNMPNPDLKWEKTGQWDLGFELGLFNNRLNFDISYYYKYT 732
Cdd:TIGR04056  606 GIVGNDNIGDrypYLSLYNLGDGGYNFGTNNGTSVtgiTESRYGNPNLKWEKTKKWNLGLDLGFFNNRLSLTVDYYYKKT 685

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  733 SDLLLDRPVPESTGYSSIMDNIGAVSNRGLDILVTAYPIQTHDFQWTSTLNLGFNKNRVEKLDESasvdpvtgkrqitTD 812
Cdd:TIGR04056  686 KDILQSRSLPSVTGYSSPYANIGKVKNKGVELSLNYRNKIGKDFSWSVRGNFTYNKNKILELDEG-------------AY 752

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  813 GFVGYDMLIREGEELSSFYGYkragIYDGIPSNWDPETMNIPSTIGEKVTYKK-----------REIIGN-GLPDWMGSF 880
Cdd:TIGR04056  753 LPVKYPYISKEGGPIGQIYGY----IADGLFKDDDSPKQTFGNVRPGDIKYKDvngdgkiddddRVPIGYsNTPDLTYGF 828

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  881 INTFNYKGFDLTLDFQFTWGVDVMQ--EYYHSTVARFLTNGIDRLYKEAWHPTlNPSGKEQAIRLNNFGQGANNQADDDW 958
Cdd:TIGR04056  829 GNSFSYKGFDLSALFQGSGGGDVFNdgRGFYPFNGGDWGNVLKIVADNRWTPE-NPNADYPRLSYGDSNNSNNYQASTRW 907

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  959 VCNGSYLRCNMIQLGYTFNPTLIKKIGLSSLRLYANVNNAFLITskDYNGYDPDNSSRLGdnkwganrqfFTYPRPRTFT 1038
Cdd:TIGR04056  908 LEDGSYLRLKNLTLGYTLPKKWLKKIGISNLRVYFSGQNLFTFS--KYKGWDPELQGNDG----------GAYPLQRTFS 975


                   ....*
gi 2796448491 1039 FGLNV 1043
Cdd:TIGR04056  976 FGVNL 980
CirA COG1629
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
106-798 1.23e-50

Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];


Pssm-ID: 441236 [Multi-domain]  Cd Length: 644  Bit Score: 190.04  E-value: 1.23e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  106 LDEVVVVGYGT-MRKSDLTGSISTAKGKDMLKAQSFNALDGLKgKVAGVNIfsnTGQPGGESRVIIRGIStiNASASPLY 184
Cdd:COG1629      1 LEEVVVTATRTdESLQDVPGSVSVISREQLEDQPATDLGDLLR-RVPGVSV---TSAGGGAGQISIRGFG--GGGNRVLV 74

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  185 VVDGVVMS-------NFELLNPNDIESIEVLKDASSAaIYGARGANGVIMVTTKRGNAGKGVHVSYDGslsigkmarkid 257
Cdd:COG1629     75 LVDGVPLNdpsggdgGLSYIDPEDIERVEVLRGPSSA-LYGSGALGGVINIVTKKPKDGKGGEVSASY------------ 141

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  258 vmdanewmstfkqglenanefqgknfttdlsqiftderlfnadGSpkYNTnwqdeasrtaisHNHQISFQRTGEGSSIGA 337
Cdd:COG1629    142 -------------------------------------------GS--YGT------------YRASLSLSGGNGKLAYRL 164

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  338 FINYTDQQGILLNSYFKRINAKLAYDDKPTDWLSTSVNLlvnhtwgnrtsdnpygqgalrtmieqlpflpvkldgEYTQT 417
Cdd:COG1629    165 SASYRDSDGYRDNSDSDRYNLRAKLGYQLGDDTRLTLSA------------------------------------SYSDS 208

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  418 NIINTSSILNNQTDPN-SGKQGFSPEGVGNpvellermqamQYRTQIFGNAALTF-HLMKGLDLKTQFGIDYH-NNRDAN 494
Cdd:COG1629    209 DQDSPGYLTLAALRPRgAMDDGTNPYSNDT-----------DDNTRDRYSLSLEYeHLGDGLKLSASAYYRYDdTDLDSD 277

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  495 YTPftprpmiNQSSEGAASANNSNSLYWQEETYLTYVKDINKHHiNAMAGMSWQEYNYtkfeasDSKYIDDFYGYYNLGS 574
Cdd:COG1629    278 FTP-------TPADGGTLEQTDFDNRTYGLELRLTYDLGFGGKH-TLLVGLDYQRQDL------DGSGYPLDLGSGSLPT 343

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  575 GTNRPSVGNDYDkwaMNSYFLRLAYSYDNKYMATVTGRYDGSSKFGQN------------NKYAFFPSVGLGWMISNEdf 642
Cdd:COG1629    344 LTSGADDDGTTT---SLALYAQDTYKLTDKLTLTAGLRYDYVSYDVDDtvtgtdsasgsrSYSAFSPSLGLTYQLSPN-- 418

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  643 lkdnsliskLKLHTSYGLTgnSEIGTYKSLATVSQSNTIIGdalhvvsyldnmpNPDLKWEKTGQWDLGFELGLFNNRLN 722
Cdd:COG1629    419 ---------LSLYASYSRG--FRAPTFGELYANGTDPYSVG-------------NPDLKPETSTNYELGLRYRLLDGRLS 474

                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2796448491  723 FDISYYYKYTSDLLLDRPVPESTGYSSIMDNIGAVSNRGLDILVTAYPIQthdfQWTSTLNLGFNKNRVEKLDESA 798
Cdd:COG1629    475 LSLALFYSDVDNEILSVPLPNDSGFSTYYTNAGKARSYGVELELSYQLTP----GLSLNASYSYTDAKFDDDTDGS 546
CarbopepD_reg_2 pfam13715
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, ...
 29-111 1.67e-19

CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.


Pssm-ID: 433425 [Multi-domain]  Cd Length: 88  Bit Score: 84.18  E-value: 1.67e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491   29 ISGTVTDDQGEAVISG-TVKVKNGSTGTITDINGKYTLSVPS--NATLVFSYIGYITQEFKV--SELKSNVLNVVLQSDT 103
Cdd:pfam13715    1 ISGTVVDENTGEPLPGaTVYVKGTTKGTVTDADGNFELKNLPagTYTLVVSFVGYKTQEKKVtvSNDNTLDVNFLLKEDA 80


                   ....*...
gi 2796448491  104 KALDEVVV 111
Cdd:pfam13715   81 LLLDEVVV 88
ligand_gated_channel cd01347
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ...
 125-818 5.11e-12

TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.


Pssm-ID: 238657 [Multi-domain]  Cd Length: 635  Bit Score: 69.79  E-value: 5.11e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  125 SISTAKGKDMLKAQSFNALDGLKgKVAGVNIfsNTGQPGGESRVIIRGISTINAsaspLYVVDGV--------VMSNFEL 196
Cdd:cd01347      1 SVSVITAEDIEKQPATSLADLLR-RIPGVSV--TRGGGGGGSTISIRGFGPDRT----LVLVDGLplassnygRGVDLNT 73

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  197 LNPNDIESIEVLKDASSaAIYGARGANGVIMVTTKRGNAGKGVHVSYDgslsigkmarkidvMDANEWMSTFkqglenan 276
Cdd:cd01347     74 IPPELIERVEVLKGPSS-ALYGSGAIGGVVNIITKRPTDEFGGSVTAG--------------YGSDNSGSSG-------- 130

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  277 efqGKNFttDLSQIFTDERLFNAdgspkyntnwqdeasRTAISHNHQISFQRTgegssiGAFINYTDQQGILlnsyfkrI 356
Cdd:cd01347    131 ---GGGF--DVSGALADDGAFGA---------------RLYGAYRDGDGTIDG------DGQADDSDEERYN-------V 177

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  357 NAKLAYDdkPTDwlSTSVNLLVNHTWGnrTSDNPYGQGALRTMIEQLPFLPvkldgeytqtniinTSSILNNQTDPNSGk 436
Cdd:cd01347    178 AGKLDWR--PDD--DTRLTLDAGYQDQ--DADGPGGTLPANGTGSSLGGGP--------------SSNTNGDRDWDYRD- 236

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  437 qgfspegvgnpvellERMQAMQYRTQIFGNAAltfhlmkGLDLKTQFGIDYHNNRDANYTPFTPRPMINQSSEGAASANN 516
Cdd:cd01347    237 ---------------RYRKRASLGLEHDLNDT-------GWTLRANLSYSYTDNDGDPLILNGGNNAAGGDLGRSGYSSE 294

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  517 SNSLYWQEETYLTYVKDINKHHINAMAGMSWQEYNYtkfeasdskyidDFYGYynlgsgtnrpsvgndydkwamnSYFLR 596
Cdd:cd01347    295 RDTTQLGFDAGLNAPFGTGPVAHTLTLGVEYRREEL------------DEKQT----------------------ALYAQ 340

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  597 LAYSYDNKYMATVTGRYD---GSSKFGQNNKY-------AFFPSVGLGWmisnedflkdnSLISKLKLHTSY--GLTGNS 664
Cdd:cd01347    341 DTIELTDDLTLTLGLRYDhydQDSKDTIAGGTtakksysHWSPSLGLVY-----------KLTDGLSLYASYsqGFRAPS 409

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  665 eigTYKSLATVSQSNTIIGdalhvvsyldnmPNPDLKWEKTGQWDLGFElGLFNNRLNFDISYYYKYTSDLLLDRPVPES 744
Cdd:cd01347    410 ---LGELYGGGSHGGTAAV------------GNPNLKPEKSKQYELGLK-YDPGDGLTLSAALFRIDIKNEIVSTPTNTG 473

                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2796448491  745 TGYSSIMDNIGAVSNRGLDILVTAYPiqTHDFQWtsTLNLGFNKNRVEKLDESASVDPVTGKRQITTDGFVGYD 818
Cdd:cd01347    474 LGLVTVYVNGGKARIRGVELEASYDL--TDGLGL--TGSYTYTDTEVKRTDGATTGNRLPGIPKHTANLGLDYE 543
PRK13486 PRK13486
TonB-dependent receptor;
104-264 1.82e-03

TonB-dependent receptor;


Pssm-ID: 139606 [Multi-domain]  Cd Length: 696  Bit Score: 42.32  E-value: 1.82e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  104 KALDEVVVVGYGTMRK-SDLTGSISTAKGKDMLKAQSFNALDGLKGkVAGVNIFSNTGQPGGeSRVIIRGIstinASASP 182
Cdd:PRK13486    23 AAEDVMIVSASGYEKKlTNAAASVSVISQEELQSSQYHDLAEALRS-VEGVDVESGTGKTGG-LEISIRGM----PASYT 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  183 LYVVDGVVMSNFELLNPND--------------IESIEVLKDASSaAIYGARGANGVIMVTTKRgNAGKgvhvsYDGSLS 248
Cdd:PRK13486    97 LILIDGVRQGGSSDVTPNGfsamntgfmpplaaIERIEVIRGPMS-TLYGSDAMGGVVNIITRK-NADK-----WLSSVN 169

                          170
                   ....*....|....*.
gi 2796448491  249 IGkmarkIDVMDANEW 264
Cdd:PRK13486   170 AG-----LNLQESNKW 180
 
Name Accession Description Interval E-value
OMP_RagA_SusC TIGR04056
TonB-linked outer membrane protein, SusC/RagA family; This model describes a distinctive clade ...
 27-1043 0e+00

TonB-linked outer membrane protein, SusC/RagA family; This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate]


Pssm-ID: 274948 [Multi-domain]  Cd Length: 981  Bit Score: 844.95  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491   27 KSISGTVTDDQGEAVISGTVKVKNGSTGTITDINGKYTLSVPSNATLVFSYIGYITQEFKVSelKSNVLNVVLQSDTKAL 106
Cdd:TIGR04056    1 ITVTGVVVDETGEPLIGASVVVKGTTNGTITDIDGNFSLKVPPGAVLVFSYIGYKTQEVKVK--GQKNLNITLKEDTQEL 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  107 DEVVVVGYGTMRKSDLTGSISTAKGKDMLKAQSFNALDGLKGKVAGVNIFSNTGQPGGESRVIIRGISTINASASPLYVV 186
Cdd:TIGR04056   79 DEVVVVGYGTQKKKSLTGAVSTVKAKELKKVPVSNLSNALQGKVAGVIITQSSGEPGGDAEIWIRGISSFGGNNSPLYVI 158

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  187 DGVVMSN-FELLNPNDIESIEVLKDASSAAIYGARGANGVIMVTTKRGNAGKgVHVSYDGSLSIGKMARKIDVMDANEWM 265
Cdd:TIGR04056  159 DGVPRDNgLSDLNPEDIESISVLKDASATAIYGSRGANGVILITTKRGKEGK-PKISYNAEFGFSTPTRLPEMLNAYEYA 237

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  266 STFKQGLENANEFQGKNFTTDLsqiftDERLFNADGSPKY-NTNWQDEA-SRTAISHNHQISFQRTGEGSSIGAFINYTD 343
Cdd:TIGR04056  238 ELYNEALLNRGSSPPDIYTDEE-----IEAYRNGLDPDLYpNTDWQDEIfKRTAFNQRHNLSVSGGTEKARYYVSLGYYN 312

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  344 QQGILLNSYFKRINAKLAYDDKPTDWLSTSVNLLVNHTWGNR---TSDNPYGQGALRTMIEQLPFLPVKLDGEYTQTNII 420
Cdd:TIGR04056  313 EEGILKNSDYKRYNFRANIDAKLTKTLKLSLNVSGSLSKYNNpggSTSNIWGALMLFPRGTPYSTPPVYSDGYYPAYNSG 392

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  421 NTSSIlnnqtdpnsgkqgfspegvgNPVELLERMQAMQYRTQIFGNAALTFHLMKGLDLKTQFGIDYHNNRDANYTPFTP 500
Cdd:TIGR04056  393 NTSLQ--------------------NPYALLNRGYNENERNRLNGNASLEQKITKGLKLKGTFSYDYSNYKNKKYYKNPY 452

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  501 RPMINQSSE-GAASANNSNSLYWQEETYLTYVKDINKHHINAMAGMSWQEYNYtkfeasdSKYIDDFYGYYNLGSGTNRP 579
Cdd:TIGR04056  453 YYNATGGANnGYYSESNSRSRNYYLEATLNYNRTFGKHNVSALLGYSQQENKS-------SSYGGLLDDLPSLDAGTSDA 525

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  580 SVGNDYDKWAMNSYFLRLAYSYDNKYMATVTGRYDGSSKFGQNNKYAFFPSVGLGWMISNEDFLKD-NSLISKLKLHTSY 658
Cdd:TIGR04056  526 SVSGSDSEYRLQSLFGRATYSYKDRYLLEFNFRYDGSSRFAKGNRWGFFPSVSLGWRISEEKFMKKlKKWLSFLKLRASY 605

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  659 GLTGNSEIGT---YKSLATVSQSNTIIGDALHVVS---YLDNMPNPDLKWEKTGQWDLGFELGLFNNRLNFDISYYYKYT 732
Cdd:TIGR04056  606 GIVGNDNIGDrypYLSLYNLGDGGYNFGTNNGTSVtgiTESRYGNPNLKWEKTKKWNLGLDLGFFNNRLSLTVDYYYKKT 685

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  733 SDLLLDRPVPESTGYSSIMDNIGAVSNRGLDILVTAYPIQTHDFQWTSTLNLGFNKNRVEKLDESasvdpvtgkrqitTD 812
Cdd:TIGR04056  686 KDILQSRSLPSVTGYSSPYANIGKVKNKGVELSLNYRNKIGKDFSWSVRGNFTYNKNKILELDEG-------------AY 752

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  813 GFVGYDMLIREGEELSSFYGYkragIYDGIPSNWDPETMNIPSTIGEKVTYKK-----------REIIGN-GLPDWMGSF 880
Cdd:TIGR04056  753 LPVKYPYISKEGGPIGQIYGY----IADGLFKDDDSPKQTFGNVRPGDIKYKDvngdgkiddddRVPIGYsNTPDLTYGF 828

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  881 INTFNYKGFDLTLDFQFTWGVDVMQ--EYYHSTVARFLTNGIDRLYKEAWHPTlNPSGKEQAIRLNNFGQGANNQADDDW 958
Cdd:TIGR04056  829 GNSFSYKGFDLSALFQGSGGGDVFNdgRGFYPFNGGDWGNVLKIVADNRWTPE-NPNADYPRLSYGDSNNSNNYQASTRW 907

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  959 VCNGSYLRCNMIQLGYTFNPTLIKKIGLSSLRLYANVNNAFLITskDYNGYDPDNSSRLGdnkwganrqfFTYPRPRTFT 1038
Cdd:TIGR04056  908 LEDGSYLRLKNLTLGYTLPKKWLKKIGISNLRVYFSGQNLFTFS--KYKGWDPELQGNDG----------GAYPLQRTFS 975


                   ....*
gi 2796448491 1039 FGLNV 1043
Cdd:TIGR04056  976 FGVNL 980
CirA COG1629
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
106-798 1.23e-50

Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];


Pssm-ID: 441236 [Multi-domain]  Cd Length: 644  Bit Score: 190.04  E-value: 1.23e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  106 LDEVVVVGYGT-MRKSDLTGSISTAKGKDMLKAQSFNALDGLKgKVAGVNIfsnTGQPGGESRVIIRGIStiNASASPLY 184
Cdd:COG1629      1 LEEVVVTATRTdESLQDVPGSVSVISREQLEDQPATDLGDLLR-RVPGVSV---TSAGGGAGQISIRGFG--GGGNRVLV 74

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  185 VVDGVVMS-------NFELLNPNDIESIEVLKDASSAaIYGARGANGVIMVTTKRGNAGKGVHVSYDGslsigkmarkid 257
Cdd:COG1629     75 LVDGVPLNdpsggdgGLSYIDPEDIERVEVLRGPSSA-LYGSGALGGVINIVTKKPKDGKGGEVSASY------------ 141

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  258 vmdanewmstfkqglenanefqgknfttdlsqiftderlfnadGSpkYNTnwqdeasrtaisHNHQISFQRTGEGSSIGA 337
Cdd:COG1629    142 -------------------------------------------GS--YGT------------YRASLSLSGGNGKLAYRL 164

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  338 FINYTDQQGILLNSYFKRINAKLAYDDKPTDWLSTSVNLlvnhtwgnrtsdnpygqgalrtmieqlpflpvkldgEYTQT 417
Cdd:COG1629    165 SASYRDSDGYRDNSDSDRYNLRAKLGYQLGDDTRLTLSA------------------------------------SYSDS 208

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  418 NIINTSSILNNQTDPN-SGKQGFSPEGVGNpvellermqamQYRTQIFGNAALTF-HLMKGLDLKTQFGIDYH-NNRDAN 494
Cdd:COG1629    209 DQDSPGYLTLAALRPRgAMDDGTNPYSNDT-----------DDNTRDRYSLSLEYeHLGDGLKLSASAYYRYDdTDLDSD 277

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  495 YTPftprpmiNQSSEGAASANNSNSLYWQEETYLTYVKDINKHHiNAMAGMSWQEYNYtkfeasDSKYIDDFYGYYNLGS 574
Cdd:COG1629    278 FTP-------TPADGGTLEQTDFDNRTYGLELRLTYDLGFGGKH-TLLVGLDYQRQDL------DGSGYPLDLGSGSLPT 343

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  575 GTNRPSVGNDYDkwaMNSYFLRLAYSYDNKYMATVTGRYDGSSKFGQN------------NKYAFFPSVGLGWMISNEdf 642
Cdd:COG1629    344 LTSGADDDGTTT---SLALYAQDTYKLTDKLTLTAGLRYDYVSYDVDDtvtgtdsasgsrSYSAFSPSLGLTYQLSPN-- 418

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  643 lkdnsliskLKLHTSYGLTgnSEIGTYKSLATVSQSNTIIGdalhvvsyldnmpNPDLKWEKTGQWDLGFELGLFNNRLN 722
Cdd:COG1629    419 ---------LSLYASYSRG--FRAPTFGELYANGTDPYSVG-------------NPDLKPETSTNYELGLRYRLLDGRLS 474

                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2796448491  723 FDISYYYKYTSDLLLDRPVPESTGYSSIMDNIGAVSNRGLDILVTAYPIQthdfQWTSTLNLGFNKNRVEKLDESA 798
Cdd:COG1629    475 LSLALFYSDVDNEILSVPLPNDSGFSTYYTNAGKARSYGVELELSYQLTP----GLSLNASYSYTDAKFDDDTDGS 546
FepA COG4771
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ...
 99-793 3.42e-37

Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];


Pssm-ID: 443803 [Multi-domain]  Cd Length: 612  Bit Score: 149.24  E-value: 3.42e-37
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491   99 LQSDTKALDEVVVVGYGTMRK-SDLTGSISTAKGKDMLKAQSFNALDGLKgKVAGVNIFSNTGqPGGESRVIIRGIStin 177
Cdd:COG4771     20 LAEDATELEEVVVTATRTEQSlSDAPASVSVITAEEIEKLGATDLADALR-LLPGVSVTRSGG-RGGSSGISIRGLG--- 94

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  178 aSASPLYVVDGVVMSN--------FELLNPNDIESIEVLKDASSaAIYGARGANGVIMVTTKRGNAGKGVHVSYDGSlsi 249
Cdd:COG4771     95 -GDRVLVLIDGVPVNNpalggggdLSYIPPDDIERIEVIRGPAS-ALYGSDAIGGVINIITKKPTDELEGSVSLGYG--- 169

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  250 gkmarkidvmdanewmstfkqglenanefqgknfttdlsqiftderlfnadgspkyntnwqdeaSRTAISHNHQISFQRT 329
Cdd:COG4771    170 ----------------------------------------------------------------SNGNGTYSGSLSLGGP 185

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  330 GEGSSIGAFINYTDQQGIllnsyfkrINAKLAYDDKPTDWLSTSVNLLVNHTWGNRTSdnpygqgalrtmieqlpflpVK 409
Cdd:COG4771    186 GDKLSFLLSGSYRDRDGY--------LDYRNGGFVGNSGYERYNLNAKLGYRLSDNHR--------------------LS 237

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  410 LDGEYTQTNIINTSSILNNQTDPNSGkqgfspegvgnpvelLERMQAMQYRTQIFGNAALTFhlmkGLDLKTQFGIDYHN 489
Cdd:COG4771    238 LSGGYSRQDRDGGPPTLGDTEISSDN---------------AGDRDTTTDRGNYSLRYNGDL----GDNLDLSLYYSRTD 298

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  490 NRDANYTPFTPRPMINQSSEGAASANNSNSLYWQEETYLTYvkdinkhhinamaGMSWQeynytkfeasdskyiddfygY 569
Cdd:COG4771    299 RDSTNGSLGGSTGSFSDSDDTTYGLELDLTYPLGGNHTLTL-------------GAEYR--------------------Y 345

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  570 YNLGSGTNRPSVGNDYDKWAmnsYFLRLAYSYDNKYMATVTGRYDGSSKFGQNNKYAFFPSVGLGWMISNEdflkdnsli 649
Cdd:COG4771    346 DDLDSSSFLGGADASRDTYG---LFAQDEWKLTDKLTLTAGLRYDYYSTFGASNYTAFSPRLGLRYDLSDN--------- 413

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  650 skLKLHTSYGLTGNSeigtyKSLATVSQSNTIIGDALHVvsyldnmPNPDLKWEKTGQWDLGFELGLFNNRLNFDISYYY 729
Cdd:COG4771    414 --LTLRASYGRGFRA-----PSLAELYGSGTGTPGRYVL-------GNPDLKPETSDNYELGLEYRLGNGGLSLSLTGFY 479

                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2796448491  730 KYTSDLLLDRPVPESTGYSSIMDNIGAVSNRGLDILVTAYPIQthdfQWTSTLNLGFNKNRVEK 793
Cdd:COG4771    480 TDIKDLIVLVPVGPGPGDVLQYENVGKARTYGLELELKYRLGK----GLTLTASYTYLDSKIDD 539
BtuB COG4206
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism];
109-345 1.20e-34

Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism];


Pssm-ID: 443355 [Multi-domain]  Cd Length: 276  Bit Score: 133.84  E-value: 1.20e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  109 VVVVGYG-TMRKSDLTGSISTAKGKDMLKAQSFNALDGLKgKVAGVNIfSNTGQPGGESRVIIRGIStinaSASPLYVVD 187
Cdd:COG4206      1 VVVTATRlEQSKSDLTGSVTVIDAEELERSGATSLADALR-RVPGVQV-SSSGGPGSAASISIRGLG----SNQTLVLID 74

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  188 GVVMSN-------FELLNPNDIESIEVLKDASSAaIYGARGANGVIMVTTKRGNAGKGVHVSY--------DGSLSIGKM 252
Cdd:COG4206     75 GVPLNDpslggvdLSLIPPDDIERIEVLKGAASA-LYGSDAIGGVINITTKKGKKGFKGSVSAsygsfgtrRLSASLSGG 153

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  253 ARKIDVMDANEWMST-----FKQGLENANEFQGKNFTTDLSQIFTDERLFNADGSPKYNTNWQDEASRTAISHNHQISFQ 327
Cdd:COG4206    154 AGKFSYSLSASYRRSdgyryNDPDLRNNDGYENTSLNARLGYKLGDNGSLSLSGGYSDSERGYPGAVGSDRNLRLSLSLE 233

                          250
                   ....*....|....*...
gi 2796448491  328 RTGEGSSIGAFINYTDQQ 345
Cdd:COG4206    234 YKLSDGWSLLLLAYYYYD 251
CarbopepD_reg_2 pfam13715
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, ...
 29-111 1.67e-19

CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.


Pssm-ID: 433425 [Multi-domain]  Cd Length: 88  Bit Score: 84.18  E-value: 1.67e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491   29 ISGTVTDDQGEAVISG-TVKVKNGSTGTITDINGKYTLSVPS--NATLVFSYIGYITQEFKV--SELKSNVLNVVLQSDT 103
Cdd:pfam13715    1 ISGTVVDENTGEPLPGaTVYVKGTTKGTVTDADGNFELKNLPagTYTLVVSFVGYKTQEKKVtvSNDNTLDVNFLLKEDA 80


                   ....*...
gi 2796448491  104 KALDEVVV 111
Cdd:pfam13715   81 LLLDEVVV 88
Plug pfam07715
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently ...
 118-225 8.36e-19

TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors. It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.


Pssm-ID: 462243 [Multi-domain]  Cd Length: 107  Bit Score: 82.70  E-value: 8.36e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  118 RKSDLTGSISTAKGKDMLKAQSFNALDGLKGkVAGVNIFSNTGqpGGESRVIIRGIStinaSASPLYVVDGVVMSN---- 193
Cdd:pfam07715    1 DLRDTPGSVSVVTAEDIEDQGATNLADALRG-VPGVSVSSGGG--GGGSSISIRGFG----SNRVLVLVDGVPLNSgggg 73

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 2796448491  194 ---FELLNPNDIESIEVLKDASSaAIYGARGANGV 225
Cdd:pfam07715   74 svdLNSIDPEDIERVEVLKGPAS-ALYGSGAIGGV 107
TonB_dep_Rec pfam00593
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
 415-770 2.33e-14

TonB dependent receptor; This model now only covers the conserved part of the barrel structure.


Pssm-ID: 395474 [Multi-domain]  Cd Length: 475  Bit Score: 76.73  E-value: 2.33e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  415 TQTNIINTSSILNNQTDPNSGKQGFSPEGVGNPVELLERMQAMQYRTQIFGNAALTFHlmkGLDLKTQFGIDYHN--NRD 492
Cdd:pfam00593    8 LLGDDTLLTLGYDYSRYTDGLDLGLTLDGYGNDGGYLGDRPLYYGRDYSDTDRKRLSL---GYDYDLGDGLSWLStlRLG 84

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  493 ANYTPFTPRPMINQSSEGAASANNSNSLYWQEETYLTYVKDINKHHINAMAGMSWQE--YNYTKFEASDSKYIDDFYGYY 570
Cdd:pfam00593   85 LRYSSLDGDYTSNSSGLSGAGDYLSDDRLYGLYGLDGDLELSLDLSHDLLLGVELRTagLDYRRLDDDAYDPYDPANPSS 164

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  571 NLGSGTNRPSVGndydkwamnsYFLRLAYSYDNKYMATVTGRYDGSSKFGQNNKY----------AFFPSVGLGWMISNE 640
Cdd:pfam00593  165 SSYSDTTTDSYG----------LYLQDNIKLTDRLTLTLGLRYDHYSTDGDDGNGggdnfsrsysAFSPRLGLVYKPTDN 234

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  641 dflkdnsliskLKLHTSYGLTGNseigtykslatVSQSNTIIGDALHVVSYLDNMPNPDLKWEKTGQWDLGFElgLFNNR 720
Cdd:pfam00593  235 -----------LSLYASYSRGFR-----------APSLGELYGSGSGGGGGAVAGGNPDLKPETSDNYELGLK--YDDGR 290

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2796448491  721 LNFDISYYYKYTSDLLLDRPVPES-TGYSSIMDNIGAVSNRGLDILVTAYP 770
Cdd:pfam00593  291 LSLSLALFYIDIKNLITSDPDGPGlGGTVYTYTNVGKARIRGVELELSGRL 341
SusC_RagA_signa TIGR04057
TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; This model ...
 201-231 4.20e-14

TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; This model describes a 31-residue signature region of the SusC/RagA family of outer membrane proteins from the Bacteriodetes. While many TonB-dependent outer membrane receptors are associated with siderophore import, this family seems to include generalized nutrient receptors that may convey fairly large oligomers of protein or carbohydrate. This family occurs in high copy numbers in the most abundant species of the human gut microbiome.


Pssm-ID: 274949 [Multi-domain]  Cd Length: 31  Bit Score: 66.83  E-value: 4.20e-14
                           10        20        30
                   ....*....|....*....|....*....|.
gi 2796448491  201 DIESIEVLKDASSAAIYGARGANGVIMVTTK 231
Cdd:TIGR04057    1 DIESISVLKDASAAAIYGSRGANGVILITTK 31
ligand_gated_channel cd01347
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ...
 125-818 5.11e-12

TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.


Pssm-ID: 238657 [Multi-domain]  Cd Length: 635  Bit Score: 69.79  E-value: 5.11e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  125 SISTAKGKDMLKAQSFNALDGLKgKVAGVNIfsNTGQPGGESRVIIRGISTINAsaspLYVVDGV--------VMSNFEL 196
Cdd:cd01347      1 SVSVITAEDIEKQPATSLADLLR-RIPGVSV--TRGGGGGGSTISIRGFGPDRT----LVLVDGLplassnygRGVDLNT 73

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  197 LNPNDIESIEVLKDASSaAIYGARGANGVIMVTTKRGNAGKGVHVSYDgslsigkmarkidvMDANEWMSTFkqglenan 276
Cdd:cd01347     74 IPPELIERVEVLKGPSS-ALYGSGAIGGVVNIITKRPTDEFGGSVTAG--------------YGSDNSGSSG-------- 130

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  277 efqGKNFttDLSQIFTDERLFNAdgspkyntnwqdeasRTAISHNHQISFQRTgegssiGAFINYTDQQGILlnsyfkrI 356
Cdd:cd01347    131 ---GGGF--DVSGALADDGAFGA---------------RLYGAYRDGDGTIDG------DGQADDSDEERYN-------V 177

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  357 NAKLAYDdkPTDwlSTSVNLLVNHTWGnrTSDNPYGQGALRTMIEQLPFLPvkldgeytqtniinTSSILNNQTDPNSGk 436
Cdd:cd01347    178 AGKLDWR--PDD--DTRLTLDAGYQDQ--DADGPGGTLPANGTGSSLGGGP--------------SSNTNGDRDWDYRD- 236

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  437 qgfspegvgnpvellERMQAMQYRTQIFGNAAltfhlmkGLDLKTQFGIDYHNNRDANYTPFTPRPMINQSSEGAASANN 516
Cdd:cd01347    237 ---------------RYRKRASLGLEHDLNDT-------GWTLRANLSYSYTDNDGDPLILNGGNNAAGGDLGRSGYSSE 294

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  517 SNSLYWQEETYLTYVKDINKHHINAMAGMSWQEYNYtkfeasdskyidDFYGYynlgsgtnrpsvgndydkwamnSYFLR 596
Cdd:cd01347    295 RDTTQLGFDAGLNAPFGTGPVAHTLTLGVEYRREEL------------DEKQT----------------------ALYAQ 340

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  597 LAYSYDNKYMATVTGRYD---GSSKFGQNNKY-------AFFPSVGLGWmisnedflkdnSLISKLKLHTSY--GLTGNS 664
Cdd:cd01347    341 DTIELTDDLTLTLGLRYDhydQDSKDTIAGGTtakksysHWSPSLGLVY-----------KLTDGLSLYASYsqGFRAPS 409

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  665 eigTYKSLATVSQSNTIIGdalhvvsyldnmPNPDLKWEKTGQWDLGFElGLFNNRLNFDISYYYKYTSDLLLDRPVPES 744
Cdd:cd01347    410 ---LGELYGGGSHGGTAAV------------GNPNLKPEKSKQYELGLK-YDPGDGLTLSAALFRIDIKNEIVSTPTNTG 473

                          650       660       670       680       690       700       710
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2796448491  745 TGYSSIMDNIGAVSNRGLDILVTAYPiqTHDFQWtsTLNLGFNKNRVEKLDESASVDPVTGKRQITTDGFVGYD 818
Cdd:cd01347    474 LGLVTVYVNGGKARIRGVELEASYDL--TDGLGL--TGSYTYTDTEVKRTDGATTGNRLPGIPKHTANLGLDYE 543
CarboxypepD_reg pfam13620
Carboxypeptidase regulatory-like domain;
28-99 1.26e-10

Carboxypeptidase regulatory-like domain;


Pssm-ID: 433354 [Multi-domain]  Cd Length: 81  Bit Score: 58.45  E-value: 1.26e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491   28 SISGTVTDDQGEAVISGTVKVKNGSTG----TITDINGKYTLS--VPSNATLVFSYIGYITQEFK---VSELKSNVLNVV 98
Cdd:pfam13620    1 TISGTVTDPSGAPVPGATVTVTNTDTGtvrtTTTDADGRYRFPglPPGTYTVTVSAPGFKTATRTgvtVTAGQTTTLDVT 80


                   .
gi 2796448491   99 L 99
Cdd:pfam13620   81 L 81
FecA COG4772
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism];
100-1045 1.13e-08

Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism];


Pssm-ID: 443804 [Multi-domain]  Cd Length: 681  Bit Score: 59.17  E-value: 1.13e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  100 QSDTKALDEVVVVGYGTMRKS--DLTGSISTAKGKDMLKAQSFNALDGLKgKVAGVNIFSNTGqPGGESRVIIRGiSTIN 177
Cdd:COG4772     17 AEAATTLETVVVTGSRAAEARlkDVPGSVSVVDREELENQAATSLREVLR-RVPGVNVQEEDG-FGLRPNIGIRG-LGPR 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  178 ASASPLYVVDGVVMSNFELLNP--------NDIESIEVLKDASSAAiYGARGANGVIMVTTKRGNAGKGVHVS------- 242
Cdd:COG4772     94 RSRGITLLEDGIPIAPAPYGDPaayyfpdlERMERIEVLRGAAALR-YGPQTVGGAINFVTRTIPTAFGGELRvtggsfg 172

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  243 -YDGSLSIGKMARKIDVMdanewmstfkqglenaneFQGKNFTTDLSQIFTDERLFNadgspkYNTNWQdeasrtaishn 321
Cdd:COG4772    173 yRRTHASVGGTVGNFGYL------------------VEYSRKRGDGFRDNSGFDIND------FNAKLG----------- 217

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  322 hqisfQRTGEGSSIGAFINYTDQQ-----GILLNSYfkRINAKLAYddKPTDWLS---TSVNLLVNHTWGNRTSdnpygq 393
Cdd:COG4772    218 -----YRLSDRQELTLKFQYYDEDantpgGLTDAQF--DADPRQSY--RPADQFDtrrTQLSLRYEHQLSDNTT------ 282

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  394 gaLRTMieqlpflpvkldGEYTQTNIinTSSILNNQTDPNSGKQGFspegvgnpvelleRMQAMQYRTQ-IFGNAALTFH 472
Cdd:COG4772    283 --LTTT------------AYYNDFSR--NWYIRQNTADPNTPGLGL-------------RGNPRGYRSYgIEPRLTHRFE 333

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  473 LmKGLDLKTQFGIDYHNNRDANytpFTPRPMINQSSEGAASANN------SNSLYWQEETYLTyvkdinkHHINAMAGMs 546
Cdd:COG4772    334 L-GGVPHTLEVGLRYHREEEDR---KQYVNTYGQGRSGAGLRRDrrfsadALAAYAQNRFELT-------GRLTLTPGL- 401

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  547 wqeynytKFEASDSKYIDdfygYYNLGSGTNRpSVGNDYDKWAmnsyflrlaysydnkymatvtgrydgsskfgqnnkya 626
Cdd:COG4772    402 -------RYEHIRRDRTD----RYSTRTGGDD-SGSNSYSEFL------------------------------------- 432

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  627 ffPSVGLGWMISNEdflkdnslisklklHTSYGltgnseiGTYKSLATVSQSNTIIGDAlhvvsyldnmPNPDLKWEKTG 706
Cdd:COG4772    433 --PGLGLLYQLTDN--------------LQLYA-------NVSRGFEPPTFGDLAYGNG----------GNPDLKPEKSW 479

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  707 QWDLGFElGLFNNRLNFDISYYYKYTSDLLLdrPVPESTGYSSIMDNIGAVSNRGLDILVTAYPIQTHDFQWTSTLNLGF 786
Cdd:COG4772    480 NYELGTR-GRIGNGLSAEVALFYIDYDNELG--SCSAAGGDRSTFTNAGETRHQGLELALDYDLLKGGGLGLPLFAAYTY 556

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  787 NKNRVEKldesaSVDPVT-GKRqittdgfvgydmliregeelssfygykragiydgIPsnwdpetmnipstigekvtykk 865
Cdd:COG4772    557 TDAEFTS-----DFGPVFaGNR----------------------------------LP---------------------- 575

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  866 reiignGLPDWMGSFINTFNYKGFDLTLDFQFtwgvdvMQEYYHSTvarfltngidrlykeawhptlnpsgkeqairLNN 945
Cdd:COG4772    576 ------YVPRHQLTAGLGYEHGGWTANLNGRY------VSEQFTDA-------------------------------ANT 612

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  946 FGQGANNQADDDWVCNgsylrcnmIQLGYTFNPtlikkiglsSLRLYANVNNaflITSKDYNGydpdnsSRLGDNKWGAn 1025
Cdd:COG4772    613 VADGSFGKIPSYTVLD--------LSASYDFGK---------NLSLFAGVNN---LFDKRYIA------SRAPNYAAGI- 665

                          970       980
                   ....*....|....*....|.
gi 2796448491 1026 rqfftYP-RPRTFTFGLNVAF 1045
Cdd:COG4772    666 -----RPgPPRTVYAGLRLKF 681
Fiu COG4774
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism];
150-807 1.55e-07

Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism];


Pssm-ID: 443806 [Multi-domain]  Cd Length: 639  Bit Score: 55.27  E-value: 1.55e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  150 VAGVNIfsNTGQPGGESRVIIRGISTINAsasplYVVDGVVMSNFELLNPNDIESIEVLKDASSaAIYGARGANGVIMVT 229
Cdd:COG4774     36 VPGVTF--GAGEGGNGDSFSIRGFSASGD-----IYVDGLRDPGQYRRDTFNLERVEVLKGPAS-VLYGRGSPGGVINLV 107

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  230 TKRGNAGKgvhvSYDGSLSIGkmarkidvmdanewmstfkqglenanEFQGKNFTTDLSQIFTDE---RLfnadgspkyN 306
Cdd:COG4774    108 TKRPTDEP----FTEVTLTYG--------------------------SDGQRRATLDVNGPLGDDlayRL---------N 148

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  307 TNWQDEasrtaishnhqisfqrtgegssiGAFINYTDQqgillnsyfKRINAKLAYDDKPTDwlSTSVNLLVNHTWGNRT 386
Cdd:COG4774    149 GMYRDS-----------------------DSYRDGVDN---------DRWGIAPSLTWRLGD--RTRLTLDYEYQDDDRT 194

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  387 SDnpYGqgalrtmieqLPFL----PVKLDGEytqtniintssilNNQTDPNSGkqgfspegvgnpvellermqamQYRTQ 462
Cdd:COG4774    195 PD--YG----------VPAVangrPVDVDRS-------------TFYGQPDDY----------------------SDSET 227

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  463 IFGNAALTFHLMKGLDLKTQFGIdYHNNRDANYTPFTprpminqSSEGAASANNSNSLYWQEETYLTYVKDIN------- 535
Cdd:COG4774    228 DSATLRLEHDFNDNWTLRNALRY-SDYDRDYRNTYPT-------GGNATGTVTRSAYRRDQDNDTLSNQTDLTgkfdtgg 299

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  536 -KHHINAMAGMSWQEYNYTKFEASDSKYIDDFY--GYYNLGSGTNRPSVGNDYDKWAMnSYFLRLAYSYDNKYMATVTGR 612
Cdd:COG4774    300 vKHTLLAGVEYSREDSDNARYSGGGTAPTVNLYnpVYGAPVTGPTLGGADNDSRTDTT-GLYLQDTISLTDRWSLLAGLR 378

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  613 YD-----------GSSKFGQNNKyAFFPSVGLGWMISNEdflkdnsliskLKLHTSYGltgnseigtyKSLATVSQSNTI 681
Cdd:COG4774    379 YDrfdtdytdrttGATTSSYDDS-AFSPRAGLVYKPTPN-----------LSLYASYS----------TSFNPGGGAPSL 436

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  682 igdalhvvsyldNMPNPDLKWEKTGQWDLGFELGLFNNRLNFDISYYYkytsdllLDRP-----VPESTGYSSimdNIGA 756
Cdd:COG4774    437 ------------SNAGQALDPEKSRQYEVGVKWDLLDGRLSLTAALFR-------IEKTnvrttDPANPGVYV---QTGE 494

                          650       660       670       680       690
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2796448491  757 VSNRGLDILVTAYPIQthdfQWTSTLNLGFNKNRVeklDESASVDPVtGKR 807
Cdd:COG4774    495 QRSRGVELEATGELTP----GWSVLAGYTYLDAEI---TKSANAANV-GNR 537
FhuE COG4773
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion ...
 100-232 5.13e-07

Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism];


Pssm-ID: 443805 [Multi-domain]  Cd Length: 692  Bit Score: 53.75  E-value: 5.13e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  100 QSDTKALDEVVVVGYGTMRKSDLTGSISTA-KG---------------KDMLKAQSFNALDGLKGKVAGVNIFSNTGqpG 163
Cdd:COG4773     26 AAEATTLPEVTVTGTAEGTGGYTAKSSSTAtKLdtplretpqsvsvvtRQLIEDQGATTLDDALRNVPGVTVSSYDG--G 103

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2796448491  164 GESRVIIRGISTINasasplYVVDGVVMSNFELLNPN--DIESIEVLKDASSaAIYGARGANGVIMVTTKR 232
Cdd:COG4773    104 GRDSFSIRGFSIDN------YLRDGLPLGGFGGGQPDtaNLERVEVLKGPAG-LLYGAGSPGGLVNLVTKR 167
PRK13486 PRK13486
TonB-dependent receptor;
104-264 1.82e-03

TonB-dependent receptor;


Pssm-ID: 139606 [Multi-domain]  Cd Length: 696  Bit Score: 42.32  E-value: 1.82e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  104 KALDEVVVVGYGTMRK-SDLTGSISTAKGKDMLKAQSFNALDGLKGkVAGVNIFSNTGQPGGeSRVIIRGIstinASASP 182
Cdd:PRK13486    23 AAEDVMIVSASGYEKKlTNAAASVSVISQEELQSSQYHDLAEALRS-VEGVDVESGTGKTGG-LEISIRGM----PASYT 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2796448491  183 LYVVDGVVMSNFELLNPND--------------IESIEVLKDASSaAIYGARGANGVIMVTTKRgNAGKgvhvsYDGSLS 248
Cdd:PRK13486    97 LILIDGVRQGGSSDVTPNGfsamntgfmpplaaIERIEVIRGPMS-TLYGSDAMGGVVNIITRK-NADK-----WLSSVN 169

                          170
                   ....*....|....*.
gi 2796448491  249 IGkmarkIDVMDANEW 264
Cdd:PRK13486   170 AG-----LNLQESNKW 180
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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