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Conserved domains on  [gi|2789375844|ref|WP_370741130|]
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MULTISPECIES: CbbQ/NirQ/NorQ/GpvN family protein [Pseudomonas]

Protein Classification

CbbQ/NirQ/NorQ/GpvN family protein( domain architecture ID 10543801)

CbbQ/NirQ/NorQ/GpvN family protein such as MoxR-like ATPase or denitrification regulatory protein, which contains an ATPase domain with similarity to NirQ and NorQ, both of which are involved in bacterial denitrification using nitrate or nitrite as electron acceptors

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AAA_5 pfam07728
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ...
 27-161 1.72e-45

AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


:

Pssm-ID: 400191 [Multi-domain]  Cd Length: 135  Bit Score: 148.98  E-value: 1.72e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2789375844  27 PVLIKGPTGCGKTRFVQHMAHRL-KLPLYTVACHDDLSAADLIGRHLIGAQGTWWQDGPLTHAVREGGICYLDEVVEARQ 105
Cdd:pfam07728   1 GVLLVGPPGTGKTELAERLAAALsNRPVFYVQLTRDTTEEDLFGRRNIDPGGASWVDGPLVRAAREGEIAVLDEINRANP 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2789375844 106 DTVVVLHPLADDRRELFLERTGEVLQAPSSFMLVVSYNPGYQnLLKGMKPSTRQRF 161
Cdd:pfam07728  81 DVLNSLLSLLDERRLLLPDGGELVKAAPDGFRLIATMNPLDR-GLNELSPALRSRF 135
CbbQ_C pfam08406
CbbQ/NirQ/NorQ C-terminal; This domain is found at the C-terminus of proteins of the CbbQ/NirQ ...
 174-258 1.30e-35

CbbQ/NirQ/NorQ C-terminal; This domain is found at the C-terminus of proteins of the CbbQ/NirQ/NorQ family of proteins which play a role in the post-translational activation of Rubisco. It is also found in the Thauera aromatica TutH protein which is similar to the CbbQ/NirQ/NorQ family, as well as in putative chaperones. The ATPase family associated with various cellular activities (AAA) pfam07728 is found in the same bacterial and archaeal proteins as the domain described here.


:

Pssm-ID: 429978  Cd Length: 85  Bit Score: 122.17  E-value: 1.30e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2789375844 174 EERIVSREAQVDSALAAQVVRLGQALRRLDQHDLEEVASTRLLIFTARMIRSGMSPREACMACLAEPLSDDPLTVAALMG 253
Cdd:pfam08406   1 EAEIVARESGVDEETAAKLVRLANRIRNLKGHGLEEGASTRLLVYAAKLIAAGLPPREACRAALVEPLTDDPDVREALRE 80


                  ....*
gi 2789375844 254 VVDVH 258
Cdd:pfam08406  81 LVDAV 85
 
Name Accession Description Interval E-value
AAA_5 pfam07728
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ...
 27-161 1.72e-45

AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 400191 [Multi-domain]  Cd Length: 135  Bit Score: 148.98  E-value: 1.72e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2789375844  27 PVLIKGPTGCGKTRFVQHMAHRL-KLPLYTVACHDDLSAADLIGRHLIGAQGTWWQDGPLTHAVREGGICYLDEVVEARQ 105
Cdd:pfam07728   1 GVLLVGPPGTGKTELAERLAAALsNRPVFYVQLTRDTTEEDLFGRRNIDPGGASWVDGPLVRAAREGEIAVLDEINRANP 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2789375844 106 DTVVVLHPLADDRRELFLERTGEVLQAPSSFMLVVSYNPGYQnLLKGMKPSTRQRF 161
Cdd:pfam07728  81 DVLNSLLSLLDERRLLLPDGGELVKAAPDGFRLIATMNPLDR-GLNELSPALRSRF 135
CbbQ_C pfam08406
CbbQ/NirQ/NorQ C-terminal; This domain is found at the C-terminus of proteins of the CbbQ/NirQ ...
 174-258 1.30e-35

CbbQ/NirQ/NorQ C-terminal; This domain is found at the C-terminus of proteins of the CbbQ/NirQ/NorQ family of proteins which play a role in the post-translational activation of Rubisco. It is also found in the Thauera aromatica TutH protein which is similar to the CbbQ/NirQ/NorQ family, as well as in putative chaperones. The ATPase family associated with various cellular activities (AAA) pfam07728 is found in the same bacterial and archaeal proteins as the domain described here.


Pssm-ID: 429978  Cd Length: 85  Bit Score: 122.17  E-value: 1.30e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2789375844 174 EERIVSREAQVDSALAAQVVRLGQALRRLDQHDLEEVASTRLLIFTARMIRSGMSPREACMACLAEPLSDDPLTVAALMG 253
Cdd:pfam08406   1 EAEIVARESGVDEETAAKLVRLANRIRNLKGHGLEEGASTRLLVYAAKLIAAGLPPREACRAALVEPLTDDPDVREALRE 80


                  ....*
gi 2789375844 254 VVDVH 258
Cdd:pfam08406  81 LVDAV 85
MoxR COG0714
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ...
 25-232 1.03e-07

MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 440478 [Multi-domain]  Cd Length: 292  Bit Score: 51.71  E-value: 1.03e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2789375844  25 GMPVLIKGPTGCGKTRFVQHMAHRLKLPLYTVACHDDLSAADLIGRHLIGAQGTWW--QDGPLTHAVreggiCYLDEVVE 102
Cdd:COG0714    31 GGHLLLEGVPGVGKTTLAKALARALGLPFIRIQFTPDLLPSDILGTYIYDQQTGEFefRPGPLFANV-----LLADEINR 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2789375844 103 ARQDTVVVLhpLaddrrELFLERT----GEVLQAPSSFMLVVSYNPGYQNllkGMKP---STRQRFvAMR--FGYPPVAD 173
Cdd:COG0714   106 APPKTQSAL--L-----EAMEERQvtipGGTYKLPEPFLVIATQNPIEQE---GTYPlpeAQLDRF-LLKlyIGYPDAEE 174

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2789375844 174 EERIVSR-----EAQVDSAL-AAQVVRLGQALRRLDQHD------LEEVASTRllifTARMIRSGMSPREA 232
Cdd:COG0714   175 EREILRRhtgrhLAEVEPVLsPEELLALQELVRQVHVSEavldyiVDLVRATR----EHPDLRKGPSPRAS 241
PHA02244 PHA02244
ATPase-like protein
 26-217 3.78e-05

ATPase-like protein


Pssm-ID: 107157 [Multi-domain]  Cd Length: 383  Bit Score: 44.34  E-value: 3.78e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2789375844  26 MPVLIKGPTGCGKTRFVQHMAHRLKLPLYTV-ACHDDLsaaDLIGrhLIGAQGTwWQDGPLTHAVREGGICYLDEVVEAR 104
Cdd:PHA02244  120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMnAIMDEF---ELKG--FIDANGK-FHETPFYEAFKKGGLFFIDEIDASI 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2789375844 105 QDTVVVLH-PLADDrrelFLERTGEVLQAPSSFMLVVSYN---PGYQNLLKG---MKPSTRQRFVAMRFGYppvadEERI 177
Cdd:PHA02244  194 PEALIIINsAIANK----FFDFADERVTAHEDFRVISAGNtlgKGADHIYVArnkIDGATLDRFAPIEFDY-----DEKI 264

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2789375844 178 vsrEAQVDSALAAQVVRLGQALRRLDQHDLEEVASTRLLI 217
Cdd:PHA02244  265 ---EHLISNGDEDLVNFVALLRHEMAEKGLDHVFSMRAII 301
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
 27-118 1.93e-04

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 40.59  E-value: 1.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2789375844  27 PVLIKGPTGCGKTRFVQHMAHRLKLPLYTVAChddLSAADLIGRHLIGAQGTWWQDGPLTHAVR--EGGICYLDEV---- 100
Cdd:cd00009    21 NLLLYGPPGTGKTTLARAIANELFRPGAPFLY---LNASDLLEGLVVAELFGHFLVRLLFELAEkaKPGVLFIDEIdsls 97

                          90
                  ....*....|....*...
gi 2789375844 101 VEARQDTVVVLHPLADDR 118
Cdd:cd00009    98 RGAQNALLRVLETLNDLR 115
 
Name Accession Description Interval E-value
AAA_5 pfam07728
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ...
 27-161 1.72e-45

AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 400191 [Multi-domain]  Cd Length: 135  Bit Score: 148.98  E-value: 1.72e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2789375844  27 PVLIKGPTGCGKTRFVQHMAHRL-KLPLYTVACHDDLSAADLIGRHLIGAQGTWWQDGPLTHAVREGGICYLDEVVEARQ 105
Cdd:pfam07728   1 GVLLVGPPGTGKTELAERLAAALsNRPVFYVQLTRDTTEEDLFGRRNIDPGGASWVDGPLVRAAREGEIAVLDEINRANP 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2789375844 106 DTVVVLHPLADDRRELFLERTGEVLQAPSSFMLVVSYNPGYQnLLKGMKPSTRQRF 161
Cdd:pfam07728  81 DVLNSLLSLLDERRLLLPDGGELVKAAPDGFRLIATMNPLDR-GLNELSPALRSRF 135
CbbQ_C pfam08406
CbbQ/NirQ/NorQ C-terminal; This domain is found at the C-terminus of proteins of the CbbQ/NirQ ...
 174-258 1.30e-35

CbbQ/NirQ/NorQ C-terminal; This domain is found at the C-terminus of proteins of the CbbQ/NirQ/NorQ family of proteins which play a role in the post-translational activation of Rubisco. It is also found in the Thauera aromatica TutH protein which is similar to the CbbQ/NirQ/NorQ family, as well as in putative chaperones. The ATPase family associated with various cellular activities (AAA) pfam07728 is found in the same bacterial and archaeal proteins as the domain described here.


Pssm-ID: 429978  Cd Length: 85  Bit Score: 122.17  E-value: 1.30e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2789375844 174 EERIVSREAQVDSALAAQVVRLGQALRRLDQHDLEEVASTRLLIFTARMIRSGMSPREACMACLAEPLSDDPLTVAALMG 253
Cdd:pfam08406   1 EAEIVARESGVDEETAAKLVRLANRIRNLKGHGLEEGASTRLLVYAAKLIAAGLPPREACRAALVEPLTDDPDVREALRE 80


                  ....*
gi 2789375844 254 VVDVH 258
Cdd:pfam08406  81 LVDAV 85
MoxR COG0714
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ...
 25-232 1.03e-07

MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 440478 [Multi-domain]  Cd Length: 292  Bit Score: 51.71  E-value: 1.03e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2789375844  25 GMPVLIKGPTGCGKTRFVQHMAHRLKLPLYTVACHDDLSAADLIGRHLIGAQGTWW--QDGPLTHAVreggiCYLDEVVE 102
Cdd:COG0714    31 GGHLLLEGVPGVGKTTLAKALARALGLPFIRIQFTPDLLPSDILGTYIYDQQTGEFefRPGPLFANV-----LLADEINR 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2789375844 103 ARQDTVVVLhpLaddrrELFLERT----GEVLQAPSSFMLVVSYNPGYQNllkGMKP---STRQRFvAMR--FGYPPVAD 173
Cdd:COG0714   106 APPKTQSAL--L-----EAMEERQvtipGGTYKLPEPFLVIATQNPIEQE---GTYPlpeAQLDRF-LLKlyIGYPDAEE 174

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2789375844 174 EERIVSR-----EAQVDSAL-AAQVVRLGQALRRLDQHD------LEEVASTRllifTARMIRSGMSPREA 232
Cdd:COG0714   175 EREILRRhtgrhLAEVEPVLsPEELLALQELVRQVHVSEavldyiVDLVRATR----EHPDLRKGPSPRAS 241
PHA02244 PHA02244
ATPase-like protein
 26-217 3.78e-05

ATPase-like protein


Pssm-ID: 107157 [Multi-domain]  Cd Length: 383  Bit Score: 44.34  E-value: 3.78e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2789375844  26 MPVLIKGPTGCGKTRFVQHMAHRLKLPLYTV-ACHDDLsaaDLIGrhLIGAQGTwWQDGPLTHAVREGGICYLDEVVEAR 104
Cdd:PHA02244  120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMnAIMDEF---ELKG--FIDANGK-FHETPFYEAFKKGGLFFIDEIDASI 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2789375844 105 QDTVVVLH-PLADDrrelFLERTGEVLQAPSSFMLVVSYN---PGYQNLLKG---MKPSTRQRFVAMRFGYppvadEERI 177
Cdd:PHA02244  194 PEALIIINsAIANK----FFDFADERVTAHEDFRVISAGNtlgKGADHIYVArnkIDGATLDRFAPIEFDY-----DEKI 264

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2789375844 178 vsrEAQVDSALAAQVVRLGQALRRLDQHDLEEVASTRLLI 217
Cdd:PHA02244  265 ---EHLISNGDEDLVNFVALLRHEMAEKGLDHVFSMRAII 301
COG1223 COG1223
Predicted ATPase, AAA+ superfamily [General function prediction only];
28-72 1.22e-04

Predicted ATPase, AAA+ superfamily [General function prediction only];


Pssm-ID: 440836 [Multi-domain]  Cd Length: 246  Bit Score: 42.18  E-value: 1.22e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2789375844  28 VLIKGPTGCGKTRFVQHMAHRLKLPLYTVACHddlsaaDLIGRHL 72
Cdd:COG1223    38 ILFYGPPGTGKTMLAEALAGELKLPLLTVRLD------SLIGSYL 76
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
 27-118 1.93e-04

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 40.59  E-value: 1.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2789375844  27 PVLIKGPTGCGKTRFVQHMAHRLKLPLYTVAChddLSAADLIGRHLIGAQGTWWQDGPLTHAVR--EGGICYLDEV---- 100
Cdd:cd00009    21 NLLLYGPPGTGKTTLARAIANELFRPGAPFLY---LNASDLLEGLVVAELFGHFLVRLLFELAEkaKPGVLFIDEIdsls 97

                          90
                  ....*....|....*...
gi 2789375844 101 VEARQDTVVVLHPLADDR 118
Cdd:cd00009    98 RGAQNALLRVLETLNDLR 115
RecA-like_protease cd19481
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ...
 23-60 2.19e-04

proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410889 [Multi-domain]  Cd Length: 158  Bit Score: 40.73  E-value: 2.19e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2789375844  23 RHGMPVLIKGPTGCGKTRFVQHMAHRLKLPLYTVACHD 60
Cdd:cd19481    24 GLPKGILLYGPPGTGKTLLAKALAGELGLPLIVVKLSS 61
SpoVK COG0464
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ...
 9-63 2.66e-04

AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


Pssm-ID: 440232 [Multi-domain]  Cd Length: 397  Bit Score: 41.82  E-value: 2.66e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2789375844   9 QPLNNEEALFEQAWRHGMPVLIKGPTGCGKTRFVQHMAHRLKLPLYTVACHDDLS 63
Cdd:COG0464   175 LPLKRPELREEYGLPPPRGLLLYGPPGTGKTLLARALAGELGLPLIEVDLSDLVS 229
Sigma54_activat pfam00158
Sigma-54 interaction domain;
15-100 2.67e-04

Sigma-54 interaction domain;


Pssm-ID: 425491 [Multi-domain]  Cd Length: 168  Bit Score: 40.46  E-value: 2.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2789375844  15 EALFEQAWR---HGMPVLIKGPTGCGKTRFVQHMaHRL----KLPLYTVAChddlsAA---DLIGRHLIGAQGtwwqdGP 84
Cdd:pfam00158   9 QEVLEQAKRvapTDAPVLITGESGTGKELFARAI-HQLspraDGPFVAVNC-----AAipeELLESELFGHEK-----GA 77

                          90       100
                  ....*....|....*....|....*
gi 2789375844  85 LTHAVR---------EGGICYLDEV 100
Cdd:pfam00158  78 FTGADSdrkglfelaDGGTLFLDEI 102
RecA-like_NVL_r1-like cd19518
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ...
 28-57 9.45e-04

first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410926 [Multi-domain]  Cd Length: 169  Bit Score: 38.92  E-value: 9.45e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 2789375844  28 VLIKGPTGCGKTRFVQHMAHRLKLPLYTVA 57
Cdd:cd19518    37 VLLHGPPGCGKTMLANAIAGELKVPFLKIS 66
HolB COG0470
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
20-71 2.84e-03

DNA polymerase III, delta prime subunit [Replication, recombination and repair];


Pssm-ID: 440238 [Multi-domain]  Cd Length: 289  Bit Score: 38.42  E-value: 2.84e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2789375844  20 QAWRHGMPVLIKGPTGCGKTRFVQHMAHRL--KLPLYTVACHDDLSAADLIGRH 71
Cdd:COG0470    13 ESGRLPHALLLHGPPGIGKTTLALALARDLlcENPEGGKACGQCHSRLMAAGNH 66
AcoR COG3284
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
23-100 3.38e-03

Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];


Pssm-ID: 442514 [Multi-domain]  Cd Length: 625  Bit Score: 38.34  E-value: 3.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2789375844  23 RHGMPVLIKGPTGCGKTRFVQHMA---HRLKLPLYTVAChddlsAAdlIGRHLIGAQGTWWQDGPLTHAVREG------- 92
Cdd:COG3284   342 DRDIPVLILGETGTGKELFARAIHaasPRADGPFVAVNC-----AA--IPEELIESELFGYEPGAFTGARRKGrpgkieq 414

                          90
                  ....*....|.
gi 2789375844  93 ---GICYLDEV 100
Cdd:COG3284   415 adgGTLFLDEI 425
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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