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Conserved domains on  [gi|2789271034|ref|WP_370712608|]
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AcvB/VirJ family lysyl-phosphatidylglycerol hydrolase, partial [Pseudomonas sp. Env-82]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
VirJ super family cl28706
Type IV secretory pathway, VirJ component [Intracellular trafficking, secretion, and vesicular ...
 217-269 4.27e-21

Type IV secretory pathway, VirJ component [Intracellular trafficking, secretion, and vesicular transport];


The actual alignment was detected with superfamily member COG3946:

Pssm-ID: 443146  Cd Length: 231  Bit Score: 88.79  E-value: 4.27e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2789271034 217 GGLAIPVVEVPAGQAKDTVTLFLSGDGGWRDLDRDVAGEMAKIGYPVVGIDTL 269
Cdd:COG3946    30 SLSDLPLVELPAKGPADTLAVFYSGDGGWRDLDKSVAEALAAQGVPVVGVDSL 82
 
Name Accession Description Interval E-value
VirJ COG3946
Type IV secretory pathway, VirJ component [Intracellular trafficking, secretion, and vesicular ...
 217-269 4.27e-21

Type IV secretory pathway, VirJ component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443146  Cd Length: 231  Bit Score: 88.79  E-value: 4.27e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2789271034 217 GGLAIPVVEVPAGQAKDTVTLFLSGDGGWRDLDRDVAGEMAKIGYPVVGIDTL 269
Cdd:COG3946    30 SLSDLPLVELPAKGPADTLAVFYSGDGGWRDLDKSVAEALAAQGVPVVGVDSL 82
VirJ pfam06057
Bacterial virulence protein (VirJ); This family consists of several bacterial VirJ virulence ...
 233-269 9.40e-14

Bacterial virulence protein (VirJ); This family consists of several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localized to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium.


Pssm-ID: 368724  Cd Length: 191  Bit Score: 67.75  E-value: 9.40e-14
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2789271034 233 DTVTLFLSGDGGWRDLDRDVAGEMAKIGYPVVGIDTL 269
Cdd:pfam06057   2 DTLAVFYSGDGGWRDLDKEVAEALQAQGVPVVGVDSL 38
 
Name Accession Description Interval E-value
VirJ COG3946
Type IV secretory pathway, VirJ component [Intracellular trafficking, secretion, and vesicular ...
 217-269 4.27e-21

Type IV secretory pathway, VirJ component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443146  Cd Length: 231  Bit Score: 88.79  E-value: 4.27e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2789271034 217 GGLAIPVVEVPAGQAKDTVTLFLSGDGGWRDLDRDVAGEMAKIGYPVVGIDTL 269
Cdd:COG3946    30 SLSDLPLVELPAKGPADTLAVFYSGDGGWRDLDKSVAEALAAQGVPVVGVDSL 82
VirJ pfam06057
Bacterial virulence protein (VirJ); This family consists of several bacterial VirJ virulence ...
 233-269 9.40e-14

Bacterial virulence protein (VirJ); This family consists of several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localized to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium.


Pssm-ID: 368724  Cd Length: 191  Bit Score: 67.75  E-value: 9.40e-14
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2789271034 233 DTVTLFLSGDGGWRDLDRDVAGEMAKIGYPVVGIDTL 269
Cdd:pfam06057   2 DTLAVFYSGDGGWRDLDKEVAEALQAQGVPVVGVDSL 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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