|
Name |
Accession |
Description |
Interval |
E-value |
| YifB |
COG0606 |
Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational ... |
3-502 |
0e+00 |
|
Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440371 [Multi-domain] Cd Length: 502 Bit Score: 661.74 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 3 LATLQSLTFVGVRPVVVNIEVHLSAGLPSFALVGLPDAEIRESKERVRSALINSGFEFPSQRITVNLAPADLPKGSAAFD 82
Cdd:COG0606 2 LARVYSVALLGIEAPLVEVEVDISNGLPGFTIVGLPDTAVKESRERVRAALKNSGFEFPAKRITVNLAPADLPKEGSRFD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 83 LAIALGIASASGQLAKADLSQWVFAGELSLSGQLTQVRSPLALAVAVRQEALNtqhplRLMLPKPSATAAATVPGLPVYG 162
Cdd:COG0606 82 LPIALGILAASGQIPAEALEDYVFLGELSLDGSLRPVRGVLPAALAAREAGIR-----RLIVPAANAAEAALVPGIEVYG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 163 PASLFEASAHLVGHgTPLEVVVTHADSSTQANPPDMKDVVGHESAKLALLAAAAGQHHIRLVGPPGSGKSMLAQRLGGLL 242
Cdd:COG0606 157 ASSLLEVVAFLRGE-QPLPPAEPDAPPAEPPYEPDLADVKGQEQAKRALEIAAAGGHNLLMIGPPGSGKTMLARRLPGIL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 243 PPLPFEESLEISAIRSLKGEANQVCDA---RPFRNPHPSTSMPALIGGGNPPSPGEITLAHLGVLFTDEVLEFDRRTLES 319
Cdd:COG0606 236 PPLTEEEALEVTAIHSVAGLLPPDGGLirrRPFRAPHHTASAAALVGGGSIPRPGEISLAHNGVLFLDELPEFSRRVLEA 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 320 LREPLETGRVNVSRAGHQASFPARFLWVCAHNPCPCGWLGHPAKECRCTPEQVRRYQAKLSGPLADRLDISVDVQAITPH 399
Cdd:COG0606 316 LRQPLEDGEVTISRANGSVTYPARFQLVAAMNPCPCGYLGDPDRECRCSPRQIRRYLSRLSGPLLDRIDLHVEVPPVPYE 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 400 ELLAAKTEHSmcTRTLLERVQHSRQMQLTRQG----CLNGELSAGQIAAHCKPSADGEKLLLQYAQKNHISARAMHRICR 475
Cdd:COG0606 396 ELSSAPPGES--SAEVRERVAAARERQLERFGgtgiRLNAQLPGRELRKYCRLDAEARALLERALERLGLSARAYDRILR 473
|
490 500
....*....|....*....|....*..
gi 2787115071 476 LARTLADLDGADTPQKNHVATAIQYRR 502
Cdd:COG0606 474 VARTIADLAGSERIEREHLAEALQYRR 500
|
|
| TIGR00368 |
TIGR00368 |
Mg chelatase-related protein; The N-terminal end matches very strongly a pfam Mg_chelatase ... |
8-501 |
9.65e-154 |
|
Mg chelatase-related protein; The N-terminal end matches very strongly a pfam Mg_chelatase domain. [Unknown function, General]
Pssm-ID: 129465 [Multi-domain] Cd Length: 499 Bit Score: 448.14 E-value: 9.65e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 8 SLTFVGVRPVVVNIEVHLSAGLPSFALVGLPDAEIRESKERVRSALINSGFEFPSQRITVNLAPADLPKGSAAFDLAIAL 87
Cdd:TIGR00368 3 SRSSLGVEAPLITIEVDISKGLPGITIVGLPETTVKESRERVKSAIKNSGFHFPAKRITINLAPADLPKEGGRFDLPIAI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 88 GIASASGQLAKADLSQWVFAGELSLSGQLTQVRSPLALAVAVRQEALNTqhplrLMLPKPSATAAATVPGLPVYGPASLF 167
Cdd:TIGR00368 83 GILAASEQLDAKNLGEYLFLGELALDGKLRGIKGVLPAIALAQKSGRKF-----IIVPKENAEEASLIDGLNIYGADHLK 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 168 EASAHLVGHGT---PLEVVVTHADSSTQANPPDMKDVVGHESAKLALLAAAAGQHHIRLVGPPGSGKSMLAQRLGGLLPP 244
Cdd:TIGR00368 158 EVVKFLEGSEKlppRTNTKPKSIINKSYIIDLDLKDIKGQQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPP 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 245 LPFEESLEISAIRSLKG-EANQ-VCDARPFRNPHPSTSMPALIGGGNPPSPGEITLAHLGVLFTDEVLEFDRRTLESLRE 322
Cdd:TIGR00368 238 LTNEEAIETARIWSLVGkLIDRkQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALRE 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 323 PLETGRVNVSRAGHQASFPARFLWVCAHNPCPCGWLGHPAKECRCTPEQVRRYQAKLSGPLADRLDISVDVQAITPHELL 402
Cdd:TIGR00368 318 PIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLL 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 403 AAKTEHSmcTRTLLERVQHSRQMQLTRQG-----CLNGELSAGQIAAHCKPSADGEKLLLQYAQKNHISARAMHRICRLA 477
Cdd:TIGR00368 398 STGSGES--SAEVKQRVIKAREIQNIRYEkfaniNKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVA 475
|
490 500
....*....|....*....|....
gi 2787115071 478 RTLADLDGADTPQKNHVATAIQYR 501
Cdd:TIGR00368 476 RTIADLKEEKNISREHLAEAIEYR 499
|
|
| PRK09862 |
PRK09862 |
ATP-dependent protease; |
1-512 |
1.67e-128 |
|
ATP-dependent protease;
Pssm-ID: 182120 [Multi-domain] Cd Length: 506 Bit Score: 383.95 E-value: 1.67e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 1 MPLATLQSLTFVGVRPVVVNIEVHLSAGLPSFALVGLPDAEIRESKERVRSALINSGFEFPSQRITVNLAPADLPKGSAA 80
Cdd:PRK09862 1 MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 81 FDLAIALGIASASGQLAKADLSQWVFAGELSLSGQLTQVrsPLALAVAVrqEALNTQHplRLMLPKPSATAAATVPGLPV 160
Cdd:PRK09862 81 YDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGV--PGAISSAT--EAIKSGR--KIIVAKDNEDEVGLINGEGC 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 161 YGPASLFEASAHLVGHGTPLEVVVThaDSSTQANPPDMKDVVGHESAKLALLAAAAGQHHIRLVGPPGSGKSMLAQRLGG 240
Cdd:PRK09862 155 LIADHLQAVCAFLEGKHALERPKPT--DAVSRALQHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRING 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 241 LLPPLPFEESLEISAIRSLKGEAN--QVCDARPFRNPHPSTSMPALIGGGNPPSPGEITLAHLGVLFTDEVLEFDRRTLE 318
Cdd:PRK09862 233 LLPDLSNEEALESAAILSLVNAESvqKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLD 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 319 SLREPLETGRVNVSRAGHQASFPARFLWVCAHNPCPCGwlGHPAKECRCTPEQVRRYQAKLSGPLADRLDISVDVqAITP 398
Cdd:PRK09862 313 ALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTG--HYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEI-PLPP 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 399 HELLAAKTEHSMCTRTLLERVQHSRQMQLTRQGCLNGELSAGQIAAHCKPSADGEKLLLQYAQKNHISARAMHRICRLAR 478
Cdd:PRK09862 390 PGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVAR 469
|
490 500 510
....*....|....*....|....*....|....*..
gi 2787115071 479 TLADLDGADTPQKNHVATAIQYR---RPLQGLQQLRA 512
Cdd:PRK09862 470 TIADIDQSDIITRQHLQEAVSYRaidRLLIHLQKLLT 506
|
|
| Mg_chelatase |
pfam01078 |
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that ... |
197-401 |
6.42e-102 |
|
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Pssm-ID: 426032 [Multi-domain] Cd Length: 207 Bit Score: 304.84 E-value: 6.42e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 197 DMKDVVGHESAKLALLAAAAGQHHIRLVGPPGSGKSMLAQRLGGLLPPLPFEESLEISAIRSL--KGEANQVCDARPFRN 274
Cdd:pfam01078 1 DLADVKGQEQAKRALEIAAAGGHNLLMIGPPGSGKTMLAKRLPGILPPLTEAEALEVTAIHSVagLGGDGGLIRRRPFRA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 275 PHPSTSMPALIGGGNPPSPGEITLAHLGVLFTDEVLEFDRRTLESLREPLETGRVNVSRAGHQASFPARFLWVCAHNPCP 354
Cdd:pfam01078 81 PHHSASAAALVGGGSIPRPGEISLAHNGVLFLDELPEFKRRVLESLRQPLEDGEITISRARAKVTFPARFQLVAAMNPCP 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2787115071 355 CGWLGHPAKECRCTPEQVRRYQAKLSGPLADRLDISVDVQAITPHEL 401
Cdd:pfam01078 161 CGYLGDPNKRCRCSPRQIRRYLSRLSGPLLDRIDLQVEVPRLPGEEL 207
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
223-352 |
8.70e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 42.75 E-value: 8.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 223 LVGPPGSGKSMLAQRLGGLLPPlPFEESLEISAIRSLKGEANQVCDARPFRNPHPSTSMPALIGGgnppspgeITLAH-- 300
Cdd:smart00382 7 IVGPPGSGKTTLARALARELGP-PGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLA--------LALARkl 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2787115071 301 -LGVLFTDEVLEFDRRTLESLREPLEtgrvnVSRAGHQASFPARFLWVCAHNP 352
Cdd:smart00382 78 kPDVLILDEITSLLDAEQEALLLLLE-----ELRLLLLLKSEKNLTVILTTND 125
|
|
| MCM |
cd17706 |
MCM helicase family; MCM helicases are a family of helicases that play an important role in ... |
220-498 |
3.33e-04 |
|
MCM helicase family; MCM helicases are a family of helicases that play an important role in replication and homologous recombination repair. The heterohexameric ring-shaped Mcm2-7 complex is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases. Mcm8 and Mcm9, form a complex required for homologous recombination (HR) repair induced by DNA interstrand crosslinks (ICLs).
Pssm-ID: 350658 [Multi-domain] Cd Length: 311 Bit Score: 42.72 E-value: 3.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 220 HIRLVGPPGSGKSMLAQRLGGLLPplpfeESLEISAIRSLKGEANQVCDARPfrnphpstsmpalIGGGNPPSPGEITLA 299
Cdd:cd17706 43 HILLVGDPGTAKSQILKYVLKIAP-----RGVYTSGKGSSGAGLTAAVVRDS-------------ETGEWYLEAGALVLA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 300 HLGVLFTDEVLEFDRRTLESLREPLETGRVNVSRAGHQASFPARFLWVCAHNPcpcgwlghpaKECRCTPEQVRRYQAKL 379
Cdd:cd17706 105 DGGVCCIDEFDKMKELDRTALHEAMEQQTISIAKAGIVTTLNARCSILAAANP----------KGGRYNPKLSPIENINL 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 380 SGPLADRLD----ISVDVQAITPHELlaakTEHSMCTRTlleRVQHSRQMQLTRQGC-LNGELSAGQI--AAHCKP--SA 450
Cdd:cd17706 175 PSPLLSRFDlifvIRDDPDEERDEEL----AEHIIDLHR---GSDPEEQVKPEEDGIpIDIELLRKYIlyARQIHPkiSE 247
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 2787115071 451 DGEKLLLQY---AQKNH-------ISARAMHRICRLARTLADLDGADTPQKNHVATAI 498
Cdd:cd17706 248 EAREKLVRWyveLRKESerrstipITARQLESVIRLAEAHAKMRLSEVVTEEDVEEAI 305
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| YifB |
COG0606 |
Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational ... |
3-502 |
0e+00 |
|
Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440371 [Multi-domain] Cd Length: 502 Bit Score: 661.74 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 3 LATLQSLTFVGVRPVVVNIEVHLSAGLPSFALVGLPDAEIRESKERVRSALINSGFEFPSQRITVNLAPADLPKGSAAFD 82
Cdd:COG0606 2 LARVYSVALLGIEAPLVEVEVDISNGLPGFTIVGLPDTAVKESRERVRAALKNSGFEFPAKRITVNLAPADLPKEGSRFD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 83 LAIALGIASASGQLAKADLSQWVFAGELSLSGQLTQVRSPLALAVAVRQEALNtqhplRLMLPKPSATAAATVPGLPVYG 162
Cdd:COG0606 82 LPIALGILAASGQIPAEALEDYVFLGELSLDGSLRPVRGVLPAALAAREAGIR-----RLIVPAANAAEAALVPGIEVYG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 163 PASLFEASAHLVGHgTPLEVVVTHADSSTQANPPDMKDVVGHESAKLALLAAAAGQHHIRLVGPPGSGKSMLAQRLGGLL 242
Cdd:COG0606 157 ASSLLEVVAFLRGE-QPLPPAEPDAPPAEPPYEPDLADVKGQEQAKRALEIAAAGGHNLLMIGPPGSGKTMLARRLPGIL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 243 PPLPFEESLEISAIRSLKGEANQVCDA---RPFRNPHPSTSMPALIGGGNPPSPGEITLAHLGVLFTDEVLEFDRRTLES 319
Cdd:COG0606 236 PPLTEEEALEVTAIHSVAGLLPPDGGLirrRPFRAPHHTASAAALVGGGSIPRPGEISLAHNGVLFLDELPEFSRRVLEA 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 320 LREPLETGRVNVSRAGHQASFPARFLWVCAHNPCPCGWLGHPAKECRCTPEQVRRYQAKLSGPLADRLDISVDVQAITPH 399
Cdd:COG0606 316 LRQPLEDGEVTISRANGSVTYPARFQLVAAMNPCPCGYLGDPDRECRCSPRQIRRYLSRLSGPLLDRIDLHVEVPPVPYE 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 400 ELLAAKTEHSmcTRTLLERVQHSRQMQLTRQG----CLNGELSAGQIAAHCKPSADGEKLLLQYAQKNHISARAMHRICR 475
Cdd:COG0606 396 ELSSAPPGES--SAEVRERVAAARERQLERFGgtgiRLNAQLPGRELRKYCRLDAEARALLERALERLGLSARAYDRILR 473
|
490 500
....*....|....*....|....*..
gi 2787115071 476 LARTLADLDGADTPQKNHVATAIQYRR 502
Cdd:COG0606 474 VARTIADLAGSERIEREHLAEALQYRR 500
|
|
| TIGR00368 |
TIGR00368 |
Mg chelatase-related protein; The N-terminal end matches very strongly a pfam Mg_chelatase ... |
8-501 |
9.65e-154 |
|
Mg chelatase-related protein; The N-terminal end matches very strongly a pfam Mg_chelatase domain. [Unknown function, General]
Pssm-ID: 129465 [Multi-domain] Cd Length: 499 Bit Score: 448.14 E-value: 9.65e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 8 SLTFVGVRPVVVNIEVHLSAGLPSFALVGLPDAEIRESKERVRSALINSGFEFPSQRITVNLAPADLPKGSAAFDLAIAL 87
Cdd:TIGR00368 3 SRSSLGVEAPLITIEVDISKGLPGITIVGLPETTVKESRERVKSAIKNSGFHFPAKRITINLAPADLPKEGGRFDLPIAI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 88 GIASASGQLAKADLSQWVFAGELSLSGQLTQVRSPLALAVAVRQEALNTqhplrLMLPKPSATAAATVPGLPVYGPASLF 167
Cdd:TIGR00368 83 GILAASEQLDAKNLGEYLFLGELALDGKLRGIKGVLPAIALAQKSGRKF-----IIVPKENAEEASLIDGLNIYGADHLK 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 168 EASAHLVGHGT---PLEVVVTHADSSTQANPPDMKDVVGHESAKLALLAAAAGQHHIRLVGPPGSGKSMLAQRLGGLLPP 244
Cdd:TIGR00368 158 EVVKFLEGSEKlppRTNTKPKSIINKSYIIDLDLKDIKGQQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPP 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 245 LPFEESLEISAIRSLKG-EANQ-VCDARPFRNPHPSTSMPALIGGGNPPSPGEITLAHLGVLFTDEVLEFDRRTLESLRE 322
Cdd:TIGR00368 238 LTNEEAIETARIWSLVGkLIDRkQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALRE 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 323 PLETGRVNVSRAGHQASFPARFLWVCAHNPCPCGWLGHPAKECRCTPEQVRRYQAKLSGPLADRLDISVDVQAITPHELL 402
Cdd:TIGR00368 318 PIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLL 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 403 AAKTEHSmcTRTLLERVQHSRQMQLTRQG-----CLNGELSAGQIAAHCKPSADGEKLLLQYAQKNHISARAMHRICRLA 477
Cdd:TIGR00368 398 STGSGES--SAEVKQRVIKAREIQNIRYEkfaniNKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVA 475
|
490 500
....*....|....*....|....
gi 2787115071 478 RTLADLDGADTPQKNHVATAIQYR 501
Cdd:TIGR00368 476 RTIADLKEEKNISREHLAEAIEYR 499
|
|
| PRK09862 |
PRK09862 |
ATP-dependent protease; |
1-512 |
1.67e-128 |
|
ATP-dependent protease;
Pssm-ID: 182120 [Multi-domain] Cd Length: 506 Bit Score: 383.95 E-value: 1.67e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 1 MPLATLQSLTFVGVRPVVVNIEVHLSAGLPSFALVGLPDAEIRESKERVRSALINSGFEFPSQRITVNLAPADLPKGSAA 80
Cdd:PRK09862 1 MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 81 FDLAIALGIASASGQLAKADLSQWVFAGELSLSGQLTQVrsPLALAVAVrqEALNTQHplRLMLPKPSATAAATVPGLPV 160
Cdd:PRK09862 81 YDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGV--PGAISSAT--EAIKSGR--KIIVAKDNEDEVGLINGEGC 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 161 YGPASLFEASAHLVGHGTPLEVVVThaDSSTQANPPDMKDVVGHESAKLALLAAAAGQHHIRLVGPPGSGKSMLAQRLGG 240
Cdd:PRK09862 155 LIADHLQAVCAFLEGKHALERPKPT--DAVSRALQHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRING 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 241 LLPPLPFEESLEISAIRSLKGEAN--QVCDARPFRNPHPSTSMPALIGGGNPPSPGEITLAHLGVLFTDEVLEFDRRTLE 318
Cdd:PRK09862 233 LLPDLSNEEALESAAILSLVNAESvqKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLD 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 319 SLREPLETGRVNVSRAGHQASFPARFLWVCAHNPCPCGwlGHPAKECRCTPEQVRRYQAKLSGPLADRLDISVDVqAITP 398
Cdd:PRK09862 313 ALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTG--HYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEI-PLPP 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 399 HELLAAKTEHSMCTRTLLERVQHSRQMQLTRQGCLNGELSAGQIAAHCKPSADGEKLLLQYAQKNHISARAMHRICRLAR 478
Cdd:PRK09862 390 PGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVAR 469
|
490 500 510
....*....|....*....|....*....|....*..
gi 2787115071 479 TLADLDGADTPQKNHVATAIQYR---RPLQGLQQLRA 512
Cdd:PRK09862 470 TIADIDQSDIITRQHLQEAVSYRaidRLLIHLQKLLT 506
|
|
| Mg_chelatase |
pfam01078 |
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that ... |
197-401 |
6.42e-102 |
|
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Pssm-ID: 426032 [Multi-domain] Cd Length: 207 Bit Score: 304.84 E-value: 6.42e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 197 DMKDVVGHESAKLALLAAAAGQHHIRLVGPPGSGKSMLAQRLGGLLPPLPFEESLEISAIRSL--KGEANQVCDARPFRN 274
Cdd:pfam01078 1 DLADVKGQEQAKRALEIAAAGGHNLLMIGPPGSGKTMLAKRLPGILPPLTEAEALEVTAIHSVagLGGDGGLIRRRPFRA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 275 PHPSTSMPALIGGGNPPSPGEITLAHLGVLFTDEVLEFDRRTLESLREPLETGRVNVSRAGHQASFPARFLWVCAHNPCP 354
Cdd:pfam01078 81 PHHSASAAALVGGGSIPRPGEISLAHNGVLFLDELPEFKRRVLESLRQPLEDGEITISRARAKVTFPARFQLVAAMNPCP 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2787115071 355 CGWLGHPAKECRCTPEQVRRYQAKLSGPLADRLDISVDVQAITPHEL 401
Cdd:pfam01078 161 CGYLGDPNKRCRCSPRQIRRYLSRLSGPLLDRIDLQVEVPRLPGEEL 207
|
|
| ChlI |
pfam13541 |
Subunit ChlI of Mg-chelatase; |
21-132 |
2.80e-50 |
|
Subunit ChlI of Mg-chelatase;
Pssm-ID: 433293 [Multi-domain] Cd Length: 121 Bit Score: 168.01 E-value: 2.80e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 21 IEVHLSAGLPSFALVGLPDAEIRESKERVRSALINSGFEFPSQRITVNLAPADLPKGSAAFDLAIALGIASASGQLAKad 100
Cdd:pfam13541 1 VEVDVSKGLPAFTIVGLPDTAVKESKERVRAALKNSGFEFPPKRITVNLAPADLKKEGSSFDLPIAIGILAAQGQIPV-- 78
|
90 100 110
....*....|....*....|....*....|..
gi 2787115071 101 LSQWVFAGELSLSGQLTQVRSPLALAVAVRQE 132
Cdd:pfam13541 79 LEETIFLGELSLDGSLRPVRGALPIALAARKH 110
|
|
| Mg_chelatase_C |
pfam13335 |
Magnesium chelatase, subunit ChlI C-terminal; This is a family of the C-terminal of putative ... |
417-501 |
4.43e-31 |
|
Magnesium chelatase, subunit ChlI C-terminal; This is a family of the C-terminal of putative bacterial magnesium chelatase subunit ChlI proteins. Most members have the associated pfam01078.
Pssm-ID: 433125 Cd Length: 93 Bit Score: 115.56 E-value: 4.43e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 417 ERVQHSRQMQLTRQGCLNGELSAGQIAAHCKPSADGEKLLLQYAQKNHISARAMHRICRLARTLADLDGADTPQKNHVAT 496
Cdd:pfam13335 9 ERVAAARERQAERFGGENAQLPGRELRRFCRLDAAARALLERALERLGLSARAYDRILRVARTIADLAGSERIGREHLAE 88
|
....*
gi 2787115071 497 AIQYR 501
Cdd:pfam13335 89 ALQYR 93
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
223-352 |
8.70e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 42.75 E-value: 8.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 223 LVGPPGSGKSMLAQRLGGLLPPlPFEESLEISAIRSLKGEANQVCDARPFRNPHPSTSMPALIGGgnppspgeITLAH-- 300
Cdd:smart00382 7 IVGPPGSGKTTLARALARELGP-PGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLA--------LALARkl 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2787115071 301 -LGVLFTDEVLEFDRRTLESLREPLEtgrvnVSRAGHQASFPARFLWVCAHNP 352
Cdd:smart00382 78 kPDVLILDEITSLLDAEQEALLLLLE-----ELRLLLLLKSEKNLTVILTTND 125
|
|
| MCM |
cd17706 |
MCM helicase family; MCM helicases are a family of helicases that play an important role in ... |
220-498 |
3.33e-04 |
|
MCM helicase family; MCM helicases are a family of helicases that play an important role in replication and homologous recombination repair. The heterohexameric ring-shaped Mcm2-7 complex is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases. Mcm8 and Mcm9, form a complex required for homologous recombination (HR) repair induced by DNA interstrand crosslinks (ICLs).
Pssm-ID: 350658 [Multi-domain] Cd Length: 311 Bit Score: 42.72 E-value: 3.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 220 HIRLVGPPGSGKSMLAQRLGGLLPplpfeESLEISAIRSLKGEANQVCDARPfrnphpstsmpalIGGGNPPSPGEITLA 299
Cdd:cd17706 43 HILLVGDPGTAKSQILKYVLKIAP-----RGVYTSGKGSSGAGLTAAVVRDS-------------ETGEWYLEAGALVLA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 300 HLGVLFTDEVLEFDRRTLESLREPLETGRVNVSRAGHQASFPARFLWVCAHNPcpcgwlghpaKECRCTPEQVRRYQAKL 379
Cdd:cd17706 105 DGGVCCIDEFDKMKELDRTALHEAMEQQTISIAKAGIVTTLNARCSILAAANP----------KGGRYNPKLSPIENINL 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 380 SGPLADRLD----ISVDVQAITPHELlaakTEHSMCTRTlleRVQHSRQMQLTRQGC-LNGELSAGQI--AAHCKP--SA 450
Cdd:cd17706 175 PSPLLSRFDlifvIRDDPDEERDEEL----AEHIIDLHR---GSDPEEQVKPEEDGIpIDIELLRKYIlyARQIHPkiSE 247
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 2787115071 451 DGEKLLLQY---AQKNH-------ISARAMHRICRLARTLADLDGADTPQKNHVATAI 498
Cdd:cd17706 248 EAREKLVRWyveLRKESerrstipITARQLESVIRLAEAHAKMRLSEVVTEEDVEEAI 305
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
220-249 |
4.87e-04 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 40.35 E-value: 4.87e-04
10 20 30
....*....|....*....|....*....|
gi 2787115071 220 HIRLVGPPGSGKSMLAQRLGGLLPPLPFEE 249
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERLAAALSNRPVFY 30
|
|
| AroK |
COG0703 |
Shikimate kinase [Amino acid transport and metabolism]; Shikimate kinase is part of the ... |
221-263 |
1.20e-03 |
|
Shikimate kinase [Amino acid transport and metabolism]; Shikimate kinase is part of the Pathway/BioSystem: Aromatic amino acid biosynthesis
Pssm-ID: 440467 [Multi-domain] Cd Length: 165 Bit Score: 39.73 E-value: 1.20e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 2787115071 221 IRLVGPPGSGKS----MLAQRLGgllppLPF---------EESLEISAIRSLKGEA 263
Cdd:COG0703 1 IVLIGMMGAGKStvgrLLAKRLG-----LPFvdtdaeieeRAGMSIPEIFAEEGEA 51
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
219-265 |
2.11e-03 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 39.87 E-value: 2.11e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 2787115071 219 HHIRLVGPPGSGKSMLAQRLGGLLpPLPFeesLEI---SAIRSLKGEANQ 265
Cdd:COG1223 36 RKILFYGPPGTGKTMLAEALAGEL-KLPL---LTVrldSLIGSYLGETAR 81
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
220-327 |
3.39e-03 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 38.28 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787115071 220 HIRLVGPPGSGKSMLAQRLGGLL--PPLPF-----EESLEISAIRSLKGEANQVCDARPFRNphpstsmpaligggnpps 292
Cdd:cd00009 21 NLLLYGPPGTGKTTLARAIANELfrPGAPFlylnaSDLLEGLVVAELFGHFLVRLLFELAEK------------------ 82
|
90 100 110
....*....|....*....|....*....|....*
gi 2787115071 293 pgeitlAHLGVLFTDEVLEFDRRTLESLREPLETG 327
Cdd:cd00009 83 ------AKPGVLFIDEIDSLSRGAQNALLRVLETL 111
|
|
| |
