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Conserved domains on  [gi|2787114907|ref|WP_370264196|]
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LVIVD repeat-containing protein [Limnobacter sp.]

Protein Classification

LVIVD repeat-containing protein( domain architecture ID 11474488)

LVIVD repeat-containing protein may form a beta-propeller, with each repeat forming one four-stranded anti-parallel beta-sheet blade

PubMed:  17681373

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
COG5276 COG5276
Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain [Function ...
124-442 1.48e-23

Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain [Function unknown];


:

Pssm-ID: 444087 [Multi-domain]  Cd Length: 320  Bit Score: 101.17  E-value: 1.48e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787114907 124 GTVVMDVSNSAQPKDVGRLTSISMLdpWESLKvnVKRGLLAAVNGTSSGggpeFDVYSIaADCTQPQLL--YSGPLADDT 201
Cdd:COG5276    40 GLAIVDVSDPANPVLVGSLPTPGGT--WRDVK--VSGDYLYVASEGSEG----LQIFDI-SDPANPKLVgrYDTGGSGAH 110
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787114907 202 VIGHEGEWApdgltyYGGDLNQGQYYAIDVSNPSAPAFITKFTPP--VGVHGLSVSPDgtRGYVtlsgtarneGNNTNGF 279
Cdd:COG5276   111 NIAVDGNYA------YVAGGSDNGLVIVDISDPTNPVLVGRYSLPgqAYLHDVQVVGD--YAYV---------ADWEDGL 173
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787114907 280 AIYDFTpiakrlpDPT-PRLLAEVYWADGSVAQHTIPVkiGGRDHLITVDELGSDGvnaaasrivtcgtdrlpfGIpRIF 358
Cdd:COG5276   174 VIVDVS-------DPSnPKLIGSYDYSPPGYTHTAVPV--EDGNYAYVGDELGGPN------------------GL-RIL 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787114907 359 DVSDVNNIKLLSKLTL-EINQPENCPEASqDTAGLAlfgydshycqvdnpedakvlacgYFNSGLRVFDISKPNAVREIA 437
Cdd:COG5276   226 DVSDPANPVLIGTYPTpGADGAHNLYVSG-NYLYVA-----------------------DYNAGLRVLDISDPSNPVEIG 281

                  ....*
gi 2787114907 438 YFNPA 442
Cdd:COG5276   282 YFDTY 286
 
Name Accession Description Interval E-value
COG5276 COG5276
Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain [Function ...
124-442 1.48e-23

Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain [Function unknown];


Pssm-ID: 444087 [Multi-domain]  Cd Length: 320  Bit Score: 101.17  E-value: 1.48e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787114907 124 GTVVMDVSNSAQPKDVGRLTSISMLdpWESLKvnVKRGLLAAVNGTSSGggpeFDVYSIaADCTQPQLL--YSGPLADDT 201
Cdd:COG5276    40 GLAIVDVSDPANPVLVGSLPTPGGT--WRDVK--VSGDYLYVASEGSEG----LQIFDI-SDPANPKLVgrYDTGGSGAH 110
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787114907 202 VIGHEGEWApdgltyYGGDLNQGQYYAIDVSNPSAPAFITKFTPP--VGVHGLSVSPDgtRGYVtlsgtarneGNNTNGF 279
Cdd:COG5276   111 NIAVDGNYA------YVAGGSDNGLVIVDISDPTNPVLVGRYSLPgqAYLHDVQVVGD--YAYV---------ADWEDGL 173
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787114907 280 AIYDFTpiakrlpDPT-PRLLAEVYWADGSVAQHTIPVkiGGRDHLITVDELGSDGvnaaasrivtcgtdrlpfGIpRIF 358
Cdd:COG5276   174 VIVDVS-------DPSnPKLIGSYDYSPPGYTHTAVPV--EDGNYAYVGDELGGPN------------------GL-RIL 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787114907 359 DVSDVNNIKLLSKLTL-EINQPENCPEASqDTAGLAlfgydshycqvdnpedakvlacgYFNSGLRVFDISKPNAVREIA 437
Cdd:COG5276   226 DVSDPANPVLIGTYPTpGADGAHNLYVSG-NYLYVA-----------------------DYNAGLRVLDISDPSNPVEIG 281

                  ....*
gi 2787114907 438 YFNPA 442
Cdd:COG5276   282 YFDTY 286
 
Name Accession Description Interval E-value
COG5276 COG5276
Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain [Function ...
124-442 1.48e-23

Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain [Function unknown];


Pssm-ID: 444087 [Multi-domain]  Cd Length: 320  Bit Score: 101.17  E-value: 1.48e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787114907 124 GTVVMDVSNSAQPKDVGRLTSISMLdpWESLKvnVKRGLLAAVNGTSSGggpeFDVYSIaADCTQPQLL--YSGPLADDT 201
Cdd:COG5276    40 GLAIVDVSDPANPVLVGSLPTPGGT--WRDVK--VSGDYLYVASEGSEG----LQIFDI-SDPANPKLVgrYDTGGSGAH 110
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787114907 202 VIGHEGEWApdgltyYGGDLNQGQYYAIDVSNPSAPAFITKFTPP--VGVHGLSVSPDgtRGYVtlsgtarneGNNTNGF 279
Cdd:COG5276   111 NIAVDGNYA------YVAGGSDNGLVIVDISDPTNPVLVGRYSLPgqAYLHDVQVVGD--YAYV---------ADWEDGL 173
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787114907 280 AIYDFTpiakrlpDPT-PRLLAEVYWADGSVAQHTIPVkiGGRDHLITVDELGSDGvnaaasrivtcgtdrlpfGIpRIF 358
Cdd:COG5276   174 VIVDVS-------DPSnPKLIGSYDYSPPGYTHTAVPV--EDGNYAYVGDELGGPN------------------GL-RIL 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787114907 359 DVSDVNNIKLLSKLTL-EINQPENCPEASqDTAGLAlfgydshycqvdnpedakvlacgYFNSGLRVFDISKPNAVREIA 437
Cdd:COG5276   226 DVSDPANPVLIGTYPTpGADGAHNLYVSG-NYLYVA-----------------------DYNAGLRVLDISDPSNPVEIG 281

                  ....*
gi 2787114907 438 YFNPA 442
Cdd:COG5276   282 YFDTY 286
COG5276 COG5276
Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain [Function ...
118-328 1.61e-08

Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain [Function unknown];


Pssm-ID: 444087 [Multi-domain]  Cd Length: 320  Bit Score: 56.10  E-value: 1.61e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787114907 118 ASLRRPGTVVMDVSNSAQPKDVGRLTSISMLDPWEslkVNVKRGLLAAVNGTSsgggpEFDVYSIAaDCTQPQLL--YSG 195
Cdd:COG5276   122 AGGSDNGLVIVDISDPTNPVLVGRYSLPGQAYLHD---VQVVGDYAYVADWED-----GLVIVDVS-DPSNPKLIgsYDY 192
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2787114907 196 PLADDTvigHEGEWAPDGLTYYGGDLNQGQY--YAIDVSNPSAPAFITKFTPP--VGVHGLSVSpdGTRGYVTlsgtarn 271
Cdd:COG5276   193 SPPGYT---HTAVPVEDGNYAYVGDELGGPNglRILDVSDPANPVLIGTYPTPgaDGAHNLYVS--GNYLYVA------- 260
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2787114907 272 egNNTNGFAIYDFTpiakrlpDPT-PRLLAEVYWADGSVAQhTIPVKIGGRDHLITVD 328
Cdd:COG5276   261 --DYNAGLRVLDIS-------DPSnPVEIGYFDTYDAGFGG-AWDVYVDPGGYIYVSD 308
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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