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Conserved domains on  [gi|2754303638|ref|WP_353955877|]
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phage major capsid protein [uncultured Bifidobacterium sp.]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_capsid super family cl46099
Phage capsid family; Family of bacteriophage hypothetical proteins and capsid proteins.
 2-81 1.11e-04

Phage capsid family; Family of bacteriophage hypothetical proteins and capsid proteins.


The actual alignment was detected with superfamily member pfam05065:

Pssm-ID: 480439  Cd Length: 272  Bit Score: 39.67  E-value: 1.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754303638   2 NAATGLNP---LLDAIGKVGDNGGSPTGIIMGYSTWASLLKLTDRNDRPLIATDMANSPTPAIYGIPTILN------MQT 72
Cdd:pfam05065 133 KAAAVTGTadnLIDLIYSLPAAYRANASFVMNRSTLAALRKLKDADGNYLWQPGLAAGQPATLLGRPVVESedmvaaGAK 212


                  ....*....
gi 2754303638  73 PAGTILLND 81
Cdd:pfam05065 213 PTGDILFGD 221
 
Name Accession Description Interval E-value
Phage_capsid pfam05065
Phage capsid family; Family of bacteriophage hypothetical proteins and capsid proteins.
 2-81 1.11e-04

Phage capsid family; Family of bacteriophage hypothetical proteins and capsid proteins.


Pssm-ID: 428287  Cd Length: 272  Bit Score: 39.67  E-value: 1.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754303638   2 NAATGLNP---LLDAIGKVGDNGGSPTGIIMGYSTWASLLKLTDRNDRPLIATDMANSPTPAIYGIPTILN------MQT 72
Cdd:pfam05065 133 KAAAVTGTadnLIDLIYSLPAAYRANASFVMNRSTLAALRKLKDADGNYLWQPGLAAGQPATLLGRPVVESedmvaaGAK 212


                  ....*....
gi 2754303638  73 PAGTILLND 81
Cdd:pfam05065 213 PTGDILFGD 221
major_cap_HK97 TIGR01554
phage major capsid protein, HK97 family; This model family represents the major capsid protein ...
 26-84 1.72e-03

phage major capsid protein, HK97 family; This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273690 [Multi-domain]  Cd Length: 386  Bit Score: 36.55  E-value: 1.72e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2754303638  26 GIIMGYSTWASLLKLTDRNDRPLIATDMANSPTPAIYGIPTILNMQTP-----AGTILLNDSSQ 84
Cdd:TIGR01554 275 VWVMNRSTLAALRKLKDGNGRYLWQPGLTAGQPATLLGRPVVETEDMPdvaagAKPILFGDFSR 338
 
Name Accession Description Interval E-value
Phage_capsid pfam05065
Phage capsid family; Family of bacteriophage hypothetical proteins and capsid proteins.
 2-81 1.11e-04

Phage capsid family; Family of bacteriophage hypothetical proteins and capsid proteins.


Pssm-ID: 428287  Cd Length: 272  Bit Score: 39.67  E-value: 1.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754303638   2 NAATGLNP---LLDAIGKVGDNGGSPTGIIMGYSTWASLLKLTDRNDRPLIATDMANSPTPAIYGIPTILN------MQT 72
Cdd:pfam05065 133 KAAAVTGTadnLIDLIYSLPAAYRANASFVMNRSTLAALRKLKDADGNYLWQPGLAAGQPATLLGRPVVESedmvaaGAK 212


                  ....*....
gi 2754303638  73 PAGTILLND 81
Cdd:pfam05065 213 PTGDILFGD 221
major_cap_HK97 TIGR01554
phage major capsid protein, HK97 family; This model family represents the major capsid protein ...
 26-84 1.72e-03

phage major capsid protein, HK97 family; This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273690 [Multi-domain]  Cd Length: 386  Bit Score: 36.55  E-value: 1.72e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2754303638  26 GIIMGYSTWASLLKLTDRNDRPLIATDMANSPTPAIYGIPTILNMQTP-----AGTILLNDSSQ 84
Cdd:TIGR01554 275 VWVMNRSTLAALRKLKDGNGRYLWQPGLTAGQPATLLGRPVVETEDMPdvaagAKPILFGDFSR 338
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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