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Conserved domains on  [gi|2716371244|ref|WP_341462622|]
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DUF5681 domain-containing protein [Bilophila wadsworthia]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5681 super family cl40935
Family of unknown function (DUF5681); This domain family is found in bacteria, archaea and ...
 17-80 2.41e-06

Family of unknown function (DUF5681); This domain family is found in bacteria, archaea and viruses, and is typically between 75 and 86 amino acids in length. There is a conserved SGNP sequence motif. There are two completely conserved G residues that may be functionally important.


The actual alignment was detected with superfamily member pfam18932:

Pssm-ID: 465917  Cd Length: 77  Bit Score: 43.01  E-value: 2.41e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2716371244  17 EKGQFLPGVSGNPKGRPKGDSCHALKMARQ-------------AAEEVAIPKLVEAAKGGDLDACRVLVAYGLPRQR 80
Cdd:pfam18932   1 KSTRFKKGQSGNPKGRPKGSKNLLLEELNRkvtvreggkekkiSKGEALVRKLVAKALKGDLRAAKLLLERLEAAEA 77
DUF6586 super family cl48394
Family of unknown function (DUF6586); This family of proteins is functionally uncharacterized. ...
 33-149 8.00e-03

Family of unknown function (DUF6586); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, mainly in Proteobacteria. Proteins in this family are approximately 150 amino acids in length. There is a conserved motif NQ and a highly conserved Tryptophan residue.


The actual alignment was detected with superfamily member pfam20227:

Pssm-ID: 466378  Cd Length: 153  Bit Score: 35.00  E-value: 8.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2716371244  33 PKGDSCHAlKMARQAAEEVAIpKLVEAAkggdLDA-CR-VLVAYGLPRQ--RPVAIPEPVALPETGNLSEQMQA----LL 104
Cdd:pfam20227  21 PAGDDEHA-DARRMALEEGAL-ALLELA----LDSlLReVAEHARLPRHdwRELLGSDPPPVAELERLRELAARpeswLA 94

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2716371244 105 RLVSAGEVS----PAAANE--IAGIIATAAKVDEVTELREQVESLKRVLDA 149
Cdd:pfam20227  95 WLLARLEALhgrdGAARRRvaNPGLIAVASQASLADELRDCLQALKALIAA 145
 
Name Accession Description Interval E-value
DUF5681 pfam18932
Family of unknown function (DUF5681); This domain family is found in bacteria, archaea and ...
 17-80 2.41e-06

Family of unknown function (DUF5681); This domain family is found in bacteria, archaea and viruses, and is typically between 75 and 86 amino acids in length. There is a conserved SGNP sequence motif. There are two completely conserved G residues that may be functionally important.


Pssm-ID: 465917  Cd Length: 77  Bit Score: 43.01  E-value: 2.41e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2716371244  17 EKGQFLPGVSGNPKGRPKGDSCHALKMARQ-------------AAEEVAIPKLVEAAKGGDLDACRVLVAYGLPRQR 80
Cdd:pfam18932   1 KSTRFKKGQSGNPKGRPKGSKNLLLEELNRkvtvreggkekkiSKGEALVRKLVAKALKGDLRAAKLLLERLEAAEA 77
DUF6586 pfam20227
Family of unknown function (DUF6586); This family of proteins is functionally uncharacterized. ...
 33-149 8.00e-03

Family of unknown function (DUF6586); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, mainly in Proteobacteria. Proteins in this family are approximately 150 amino acids in length. There is a conserved motif NQ and a highly conserved Tryptophan residue.


Pssm-ID: 466378  Cd Length: 153  Bit Score: 35.00  E-value: 8.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2716371244  33 PKGDSCHAlKMARQAAEEVAIpKLVEAAkggdLDA-CR-VLVAYGLPRQ--RPVAIPEPVALPETGNLSEQMQA----LL 104
Cdd:pfam20227  21 PAGDDEHA-DARRMALEEGAL-ALLELA----LDSlLReVAEHARLPRHdwRELLGSDPPPVAELERLRELAARpeswLA 94

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2716371244 105 RLVSAGEVS----PAAANE--IAGIIATAAKVDEVTELREQVESLKRVLDA 149
Cdd:pfam20227  95 WLLARLEALhgrdGAARRRvaNPGLIAVASQASLADELRDCLQALKALIAA 145
 
Name Accession Description Interval E-value
DUF5681 pfam18932
Family of unknown function (DUF5681); This domain family is found in bacteria, archaea and ...
 17-80 2.41e-06

Family of unknown function (DUF5681); This domain family is found in bacteria, archaea and viruses, and is typically between 75 and 86 amino acids in length. There is a conserved SGNP sequence motif. There are two completely conserved G residues that may be functionally important.


Pssm-ID: 465917  Cd Length: 77  Bit Score: 43.01  E-value: 2.41e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2716371244  17 EKGQFLPGVSGNPKGRPKGDSCHALKMARQ-------------AAEEVAIPKLVEAAKGGDLDACRVLVAYGLPRQR 80
Cdd:pfam18932   1 KSTRFKKGQSGNPKGRPKGSKNLLLEELNRkvtvreggkekkiSKGEALVRKLVAKALKGDLRAAKLLLERLEAAEA 77
DUF6586 pfam20227
Family of unknown function (DUF6586); This family of proteins is functionally uncharacterized. ...
 33-149 8.00e-03

Family of unknown function (DUF6586); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, mainly in Proteobacteria. Proteins in this family are approximately 150 amino acids in length. There is a conserved motif NQ and a highly conserved Tryptophan residue.


Pssm-ID: 466378  Cd Length: 153  Bit Score: 35.00  E-value: 8.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2716371244  33 PKGDSCHAlKMARQAAEEVAIpKLVEAAkggdLDA-CR-VLVAYGLPRQ--RPVAIPEPVALPETGNLSEQMQA----LL 104
Cdd:pfam20227  21 PAGDDEHA-DARRMALEEGAL-ALLELA----LDSlLReVAEHARLPRHdwRELLGSDPPPVAELERLRELAARpeswLA 94

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2716371244 105 RLVSAGEVS----PAAANE--IAGIIATAAKVDEVTELREQVESLKRVLDA 149
Cdd:pfam20227  95 WLLARLEALhgrdGAARRRvaNPGLIAVASQASLADELRDCLQALKALIAA 145
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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