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Conserved domains on  [gi|2713496847|ref|WP_340439406|]
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transposase, partial [Pseudomonas aeruginosa]

Protein Classification

transposase( domain architecture ID 10004970)

transposase binds to the end of a transposon and catalyzes the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism; similar to Escherichia coli REP-associated tyrosine transposase

Gene Ontology:  GO:0006313|GO:0004803|GO:0003677
PubMed:  20085626|16209952

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RAYT COG1943
REP element-mobilizing transposase RayT [Mobilome: prophages, transposons];
4-73 4.40e-22

REP element-mobilizing transposase RayT [Mobilome: prophages, transposons];


:

Pssm-ID: 441546  Cd Length: 138  Bit Score: 82.27  E-value: 4.40e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2713496847   4 LRDLKDAFGIKVYAFCLMTNHVHLLLAPGDSLSgLAQLMKTLAARTTRYRNRLEGRSGTLWESRYKSSVV 73
Cdd:COG1943    40 LREIAERYGVEILAYVLMPDHVHLLVTLPPDLS-LSKIMRRLKGRSSRRINRRYLREGHLWQRRYFAHTV 108
 
Name Accession Description Interval E-value
RAYT COG1943
REP element-mobilizing transposase RayT [Mobilome: prophages, transposons];
4-73 4.40e-22

REP element-mobilizing transposase RayT [Mobilome: prophages, transposons];


Pssm-ID: 441546  Cd Length: 138  Bit Score: 82.27  E-value: 4.40e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2713496847   4 LRDLKDAFGIKVYAFCLMTNHVHLLLAPGDSLSgLAQLMKTLAARTTRYRNRLEGRSGTLWESRYKSSVV 73
Cdd:COG1943    40 LREIAERYGVEILAYVLMPDHVHLLVTLPPDLS-LSKIMRRLKGRSSRRINRRYLREGHLWQRRYFAHTV 108
Y1_Tnp pfam01797
Transposase IS200 like; Transposases are needed for efficient transposition of the insertion ...
 4-73 1.14e-13

Transposase IS200 like; Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.


Pssm-ID: 460334  Cd Length: 119  Bit Score: 60.26  E-value: 1.14e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2713496847   4 LRDLKDAFGIKVYAFCLMTNHVHLLLAPGDSLSgLAQLMKTLAARTTRYRNR----LEGRSGTLWESRYKSSVV 73
Cdd:pfam01797  32 IREIAKEYGIEILEFNGMPDHVHLLVSAPPKLS-ISKIVNALKGVSSRRINKefpeLRKKLGHLWQRSYFVGTV 104
transpos_IS200 NF033573
IS200/IS605 family transposase; Most IS200/IS605 family insertion sequences encode both this ...
 4-72 5.17e-04

IS200/IS605 family transposase; Most IS200/IS605 family insertion sequences encode both this transposase, TnpA, about 130 amino acids long, and larger accessory protein, TnpB, that may act as a methyltransferase.


Pssm-ID: 468092  Cd Length: 126  Bit Score: 35.57  E-value: 5.17e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2713496847   4 LRDLKDAFGIKVYAFCLMTNHVHLLLA--PGDSLSGLAQLMKTLAARTTRYRN---RLEGRSGTLW-ESRYKSSV 72
Cdd:NF033573   38 LREICEEKGVEILELEVDPDHVHLLVSypPKLSPSKLVNALKGKSSRRLFKEFpelKKKLWGGHFWsRGYFVSTV 112
 
Name Accession Description Interval E-value
RAYT COG1943
REP element-mobilizing transposase RayT [Mobilome: prophages, transposons];
4-73 4.40e-22

REP element-mobilizing transposase RayT [Mobilome: prophages, transposons];


Pssm-ID: 441546  Cd Length: 138  Bit Score: 82.27  E-value: 4.40e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2713496847   4 LRDLKDAFGIKVYAFCLMTNHVHLLLAPGDSLSgLAQLMKTLAARTTRYRNRLEGRSGTLWESRYKSSVV 73
Cdd:COG1943    40 LREIAERYGVEILAYVLMPDHVHLLVTLPPDLS-LSKIMRRLKGRSSRRINRRYLREGHLWQRRYFAHTV 108
Y1_Tnp pfam01797
Transposase IS200 like; Transposases are needed for efficient transposition of the insertion ...
 4-73 1.14e-13

Transposase IS200 like; Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.


Pssm-ID: 460334  Cd Length: 119  Bit Score: 60.26  E-value: 1.14e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2713496847   4 LRDLKDAFGIKVYAFCLMTNHVHLLLAPGDSLSgLAQLMKTLAARTTRYRNR----LEGRSGTLWESRYKSSVV 73
Cdd:pfam01797  32 IREIAKEYGIEILEFNGMPDHVHLLVSAPPKLS-ISKIVNALKGVSSRRINKefpeLRKKLGHLWQRSYFVGTV 104
transpos_IS200 NF033573
IS200/IS605 family transposase; Most IS200/IS605 family insertion sequences encode both this ...
 4-72 5.17e-04

IS200/IS605 family transposase; Most IS200/IS605 family insertion sequences encode both this transposase, TnpA, about 130 amino acids long, and larger accessory protein, TnpB, that may act as a methyltransferase.


Pssm-ID: 468092  Cd Length: 126  Bit Score: 35.57  E-value: 5.17e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2713496847   4 LRDLKDAFGIKVYAFCLMTNHVHLLLA--PGDSLSGLAQLMKTLAARTTRYRN---RLEGRSGTLW-ESRYKSSV 72
Cdd:NF033573   38 LREICEEKGVEILELEVDPDHVHLLVSypPKLSPSKLVNALKGKSSRRLFKEFpelKKKLWGGHFWsRGYFVSTV 112
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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