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Conserved domains on  [gi|2687061436|ref|WP_333949489|]
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RHS domain-containing protein, partial [Escherichia marmotae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RHS_core super family cl49306
RHS element core protein;
7-69 2.49e-06

RHS element core protein;


The actual alignment was detected with superfamily member NF041261:

Pssm-ID: 469161 [Multi-domain]  Cd Length: 1261  Bit Score: 42.68  E-value: 2.49e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2687061436    7 SRKIWYYHTDVTGTVQEVSTADGTLVWAGYQAGFGENRGDisNSGAYFEQPLRLPGQYFDEET 69
Cdd:NF041261  1154 ARKLHLYHCDHRGLPLALISEEGNTAWQGEYDEWGNLLNE--ENPHHLQQPYRLPGQQYDEES 1214
 
Name Accession Description Interval E-value
RHS_core NF041261
RHS element core protein;
7-69 2.49e-06

RHS element core protein;


Pssm-ID: 469161 [Multi-domain]  Cd Length: 1261  Bit Score: 42.68  E-value: 2.49e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2687061436    7 SRKIWYYHTDVTGTVQEVSTADGTLVWAGYQAGFGENRGDisNSGAYFEQPLRLPGQYFDEET 69
Cdd:NF041261  1154 ARKLHLYHCDHRGLPLALISEEGNTAWQGEYDEWGNLLNE--ENPHHLQQPYRLPGQQYDEES 1214
RHS pfam03527
RHS protein;
10-41 6.31e-06

RHS protein;


Pssm-ID: 427349 [Multi-domain]  Cd Length: 38  Bit Score: 38.44  E-value: 6.31e-06
                         10        20        30
                 ....*....|....*....|....*....|..
gi 2687061436 10 IWYYHTDVTGTVQEVSTADGTLVWAGYQAGFG 41
Cdd:pfam03527  1 IYYYHTDHLGTPEELTDEAGEIVWSAEYDAWG 32
 
Name Accession Description Interval E-value
RHS_core NF041261
RHS element core protein;
7-69 2.49e-06

RHS element core protein;


Pssm-ID: 469161 [Multi-domain]  Cd Length: 1261  Bit Score: 42.68  E-value: 2.49e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2687061436    7 SRKIWYYHTDVTGTVQEVSTADGTLVWAGYQAGFGENRGDisNSGAYFEQPLRLPGQYFDEET 69
Cdd:NF041261  1154 ARKLHLYHCDHRGLPLALISEEGNTAWQGEYDEWGNLLNE--ENPHHLQQPYRLPGQQYDEES 1214
RHS pfam03527
RHS protein;
10-41 6.31e-06

RHS protein;


Pssm-ID: 427349 [Multi-domain]  Cd Length: 38  Bit Score: 38.44  E-value: 6.31e-06
                         10        20        30
                 ....*....|....*....|....*....|..
gi 2687061436 10 IWYYHTDVTGTVQEVSTADGTLVWAGYQAGFG 41
Cdd:pfam03527  1 IYYYHTDHLGTPEELTDEAGEIVWSAEYDAWG 32
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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