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Conserved domains on  [gi|2672382838|ref|WP_331270644|]
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MULTISPECIES: transposase [Thermoanaerobacter]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
transpos_IS256 super family cl48866
IS256 family transposase; Members of this family belong to the branch of the IS256-like family ...
 29-82 2.40e-15

IS256 family transposase; Members of this family belong to the branch of the IS256-like family of transposases that includes the founding member. It excludes the IS1249 group.


The actual alignment was detected with superfamily member NF033543:

Pssm-ID: 468074 [Multi-domain]  Cd Length: 406  Bit Score: 68.79  E-value: 2.40e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2672382838  29 IRRYFQGATWQECQTHFMRNILDKTPKVLQKEIHAKVRAIFEAPYAKTARMVLN 82
Cdd:NF033543  244 IREVFPGATWQRCIVHKIRNVLAKVPKKDRKEVAAALKAIYQAPDAEEAEAALD 297
 
Name Accession Description Interval E-value
transpos_IS256 NF033543
IS256 family transposase; Members of this family belong to the branch of the IS256-like family ...
 29-82 2.40e-15

IS256 family transposase; Members of this family belong to the branch of the IS256-like family of transposases that includes the founding member. It excludes the IS1249 group.


Pssm-ID: 468074 [Multi-domain]  Cd Length: 406  Bit Score: 68.79  E-value: 2.40e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2672382838  29 IRRYFQGATWQECQTHFMRNILDKTPKVLQKEIHAKVRAIFEAPYAKTARMVLN 82
Cdd:NF033543  244 IREVFPGATWQRCIVHKIRNVLAKVPKKDRKEVAAALKAIYQAPDAEEAEAALD 297
IS285 COG3328
Transposase (or an inactivated derivative) [Mobilome: prophages, transposons];
28-83 8.08e-15

Transposase (or an inactivated derivative) [Mobilome: prophages, transposons];


Pssm-ID: 442557  Cd Length: 400  Bit Score: 67.14  E-value: 8.08e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2672382838  28 SIRRYFQGATWQECQTHFMRNILDKTPKVLQKEIHAKVRAIFEAPYAKTARMVLNK 83
Cdd:COG3328   241 AIEAVFPGARWQRCIVHKIRNSLKYVPKKDRKAVAADLKAIYQAPTKEAAEAALDA 296
Transposase_mut pfam00872
Transposase, Mutator family;
28-82 3.79e-12

Transposase, Mutator family;


Pssm-ID: 307151  Cd Length: 380  Bit Score: 59.70  E-value: 3.79e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2672382838  28 SIRRYFQGATWQECQTHFMRNILDKTPKVLQKEIHAKVRAIFEAPYAKTARMVLN 82
Cdd:pfam00872 242 AISAVFPGAAWQRCRVHFLRNLLAKVPKKDRDDVLEALKTIYRAPDAEEARAALE 296
 
Name Accession Description Interval E-value
transpos_IS256 NF033543
IS256 family transposase; Members of this family belong to the branch of the IS256-like family ...
 29-82 2.40e-15

IS256 family transposase; Members of this family belong to the branch of the IS256-like family of transposases that includes the founding member. It excludes the IS1249 group.


Pssm-ID: 468074 [Multi-domain]  Cd Length: 406  Bit Score: 68.79  E-value: 2.40e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2672382838  29 IRRYFQGATWQECQTHFMRNILDKTPKVLQKEIHAKVRAIFEAPYAKTARMVLN 82
Cdd:NF033543  244 IREVFPGATWQRCIVHKIRNVLAKVPKKDRKEVAAALKAIYQAPDAEEAEAALD 297
IS285 COG3328
Transposase (or an inactivated derivative) [Mobilome: prophages, transposons];
28-83 8.08e-15

Transposase (or an inactivated derivative) [Mobilome: prophages, transposons];


Pssm-ID: 442557  Cd Length: 400  Bit Score: 67.14  E-value: 8.08e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2672382838  28 SIRRYFQGATWQECQTHFMRNILDKTPKVLQKEIHAKVRAIFEAPYAKTARMVLNK 83
Cdd:COG3328   241 AIEAVFPGARWQRCIVHKIRNSLKYVPKKDRKAVAADLKAIYQAPTKEAAEAALDA 296
Transposase_mut pfam00872
Transposase, Mutator family;
28-82 3.79e-12

Transposase, Mutator family;


Pssm-ID: 307151  Cd Length: 380  Bit Score: 59.70  E-value: 3.79e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2672382838  28 SIRRYFQGATWQECQTHFMRNILDKTPKVLQKEIHAKVRAIFEAPYAKTARMVLN 82
Cdd:pfam00872 242 AISAVFPGAAWQRCRVHFLRNLLAKVPKKDRDDVLEALKTIYRAPDAEEARAALE 296
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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