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Conserved domains on  [gi|2605019998|ref|WP_317562573|]
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Ig-like domain-containing protein, partial [Nitratireductor aquimarinus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
tand_rpt_95 super family cl39172
tandem-95 repeat; This 95-amino acid repeat occurs in tandem in proteins that may be several ...
 28-75 2.79e-06

tandem-95 repeat; This 95-amino acid repeat occurs in tandem in proteins that may be several thousand amino acids long.


The actual alignment was detected with superfamily member NF012211:

Pssm-ID: 333740 [Multi-domain]  Cd Length: 98  Bit Score: 41.08  E-value: 2.79e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 2605019998 28 GELVLNADGTYSYTPTAGLSvpsgSTDVFTYTVIDADGDTATAELTIT 75
Cdd:NF012211  40 GTVTDNGDGTYTYTPNENFN----GDDSFTYTVSDGTGATATATVFVT 83
 
Name Accession Description Interval E-value
tand_rpt_95 NF012211
tandem-95 repeat; This 95-amino acid repeat occurs in tandem in proteins that may be several ...
 28-75 2.79e-06

tandem-95 repeat; This 95-amino acid repeat occurs in tandem in proteins that may be several thousand amino acids long.


Pssm-ID: 333740 [Multi-domain]  Cd Length: 98  Bit Score: 41.08  E-value: 2.79e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 2605019998 28 GELVLNADGTYSYTPTAGLSvpsgSTDVFTYTVIDADGDTATAELTIT 75
Cdd:NF012211  40 GTVTDNGDGTYTYTPNENFN----GDDSFTYTVSDGTGATATATVFVT 83
Cadherin_5 pfam17892
Cadherin-like domain;
23-77 5.01e-04

Cadherin-like domain;


Pssm-ID: 436123 [Multi-domain]  Cd Length: 98  Bit Score: 35.24  E-value: 5.01e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 2605019998 23 IAGTYGELVLNADGTYSYTPTAGLSvpsgSTDVFTYTVIDADGDTATAELTITFS 77
Cdd:pfam17892 48 ADAGHGTVVDNGDGTYTFTPAANYN----GPVSFTYTVSDGHGGTTTATASLTVT 98
T1SS_rpt_143 TIGR03660
T1SS-143 repeat domain; This model represents a domain of about 143 amino acids that may occur ...
 29-75 5.73e-04

T1SS-143 repeat domain; This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion. [Cellular processes, Pathogenesis]


Pssm-ID: 132699 [Multi-domain]  Cd Length: 137  Bit Score: 35.72  E-value: 5.73e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2605019998  29 ELVLNADGTYSYTPTAGLSVPSGSTD---VFTYTVIDADGDTATAELTIT 75
Cdd:TIGR03660  59 TLTLNADGSYEFTLEGPLDHAAGSDEltlNFPIIATDFDGDTSSITLPVT 108
 
Name Accession Description Interval E-value
tand_rpt_95 NF012211
tandem-95 repeat; This 95-amino acid repeat occurs in tandem in proteins that may be several ...
 28-75 2.79e-06

tandem-95 repeat; This 95-amino acid repeat occurs in tandem in proteins that may be several thousand amino acids long.


Pssm-ID: 333740 [Multi-domain]  Cd Length: 98  Bit Score: 41.08  E-value: 2.79e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 2605019998 28 GELVLNADGTYSYTPTAGLSvpsgSTDVFTYTVIDADGDTATAELTIT 75
Cdd:NF012211  40 GTVTDNGDGTYTYTPNENFN----GDDSFTYTVSDGTGATATATVFVT 83
Cadherin_5 pfam17892
Cadherin-like domain;
23-77 5.01e-04

Cadherin-like domain;


Pssm-ID: 436123 [Multi-domain]  Cd Length: 98  Bit Score: 35.24  E-value: 5.01e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 2605019998 23 IAGTYGELVLNADGTYSYTPTAGLSvpsgSTDVFTYTVIDADGDTATAELTITFS 77
Cdd:pfam17892 48 ADAGHGTVVDNGDGTYTFTPAANYN----GPVSFTYTVSDGHGGTTTATASLTVT 98
T1SS_rpt_143 TIGR03660
T1SS-143 repeat domain; This model represents a domain of about 143 amino acids that may occur ...
 29-75 5.73e-04

T1SS-143 repeat domain; This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion. [Cellular processes, Pathogenesis]


Pssm-ID: 132699 [Multi-domain]  Cd Length: 137  Bit Score: 35.72  E-value: 5.73e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2605019998  29 ELVLNADGTYSYTPTAGLSVPSGSTD---VFTYTVIDADGDTATAELTIT 75
Cdd:TIGR03660  59 TLTLNADGSYEFTLEGPLDHAAGSDEltlNFPIIATDFDGDTSSITLPVT 108
Big_9 pfam17963
Bacterial Ig domain; This entry represents a wide variety of bacterial Ig domains.
 24-65 7.64e-03

Bacterial Ig domain; This entry represents a wide variety of bacterial Ig domains.


Pssm-ID: 465590 [Multi-domain]  Cd Length: 90  Bit Score: 31.93  E-value: 7.64e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 2605019998 24 AGTYGELVLNADGTYSYTPTAGLSVpsgsTDVFTYTVIDADG 65
Cdd:pfam17963 53 APANGTVTVNADGTLTYTPNAGFSG----TDSFTYTVSDGSG 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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