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Conserved domains on  [gi|2588149501|ref|WP_313988495|]
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OmpA family protein [Methylophilus sp. VKM B-3414]

Protein Classification

OmpA family protein( domain architecture ID 13293699)

OmpA family protein may bind peptidoglycan

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 198-301 2.09e-42

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


:

Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 141.92  E-value: 2.09e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 198 DVLFDTGKAELKSGATTNLAKLATFLNQHQNRSVMIEGHTDTVGNADYNQALSQRRADSVKGWLMKQGIHSDRLVTAGKG 277
Cdd:cd07185     3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYG 82

                          90       100
                  ....*....|....*....|....
gi 2588149501 278 ETSPVSGNDSASGRQLNRRVEVII 301
Cdd:cd07185    83 ESRPIASNDTEEGRAKNRRVEIVI 106
PRK09039 super family cl32341
peptidoglycan -binding protein;
92-298 2.12e-13

peptidoglycan -binding protein;


The actual alignment was detected with superfamily member PRK09039:

Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 69.61  E-value: 2.12e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501  92 AQALAESRLLVEQRTALSQQRETA--RLDSRTKEVDIAR--SNADSARIETLAAQKEVENARSNAESSRLKtlAAQQESA 167
Cdd:PRK09039   91 SAAEAERSRLQALLAELAGAGAAAegRAGELAQELDSEKqvSARALAQVELLNQQIAALRRQLAALEAALD--ASEKRDR 168

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 168 NAQQKAADLQRQ--------IAELNAKPTE-----------RGLVVTLGD-------VLFDTGKAELKSGATTNLAKLAT 221
Cdd:PRK09039  169 ESQAKIADLGRRlnvalaqrVQELNRYRSEffgrlreilgdREGIRIVGDrfvfqseVLFPTGSAELNPEGQAEIAKLAA 248

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 222 FLNQHQ-------NRSVMIEGHTDTV---GNADY--NQALSQRRADSVKGWLMKQGIHSDRLVTAGKGETSPVSGNDSAS 289
Cdd:PRK09039  249 ALIELAkeippeiNWVLRVDGHTDNVplsGTGRFrdNWELSSARAISVVKFLIALGVPADRLAAAGFGEFQPLDPGDTPE 328


                  ....*....
gi 2588149501 290 GRQLNRRVE 298
Cdd:PRK09039  329 ARARNRRIE 337
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 198-301 2.09e-42

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 141.92  E-value: 2.09e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 198 DVLFDTGKAELKSGATTNLAKLATFLNQHQNRSVMIEGHTDTVGNADYNQALSQRRADSVKGWLMKQGIHSDRLVTAGKG 277
Cdd:cd07185     3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYG 82

                          90       100
                  ....*....|....*....|....
gi 2588149501 278 ETSPVSGNDSASGRQLNRRVEVII 301
Cdd:cd07185    83 ESRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 167-304 5.88e-42

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 147.24  E-value: 5.88e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 167 ANAQQKAADLQRQIAELNAKPTERGLVVTLGDVLFDTGKAELKSGATTNLAKLATFLNQHQNRSVMIEGHTDTVGNADYN 246
Cdd:COG2885   157 AAALDAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYN 236

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2588149501 247 QALSQRRADSVKGWLMKQGIHSDRLVTAGKGETSPVSGNDSASGRQLNRRVEVIIENT 304
Cdd:COG2885   237 LALSERRAEAVKDYLVSKGIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVVLKK 294
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 199-301 4.97e-22

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 88.77  E-value: 4.97e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 199 VLFDTGKAELKSGATTNLAKLATFLNQHQNRSVMIEGHTDTVGNADYNQALSQRRADSVKGWLMKQGIHSDRLVTAGKGE 278
Cdd:TIGR02802   2 VYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYGK 81

                          90       100
                  ....*....|....*....|....
gi 2588149501 279 TSPV-SGNDSASGRQlNRRVEVII 301
Cdd:TIGR02802  82 EKPAaLGHDEAAWAK-NRRAVLVY 104
PRK06925 PRK06925
flagellar motor protein MotB;
172-305 1.22e-20

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 88.67  E-value: 1.22e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 172 KAADLQRQIAelnAKPTERGLVVTLGD-VLFDTGKAELKSGATTNLAKLATFLNQHQNrSVMIEGHTDTVGNADY----N 246
Cdd:PRK06925   95 EENELKSVIT---AKRDERGVVLVLQEaVLFETGEADILKQAEPFLHKIGVLLSTIPN-DIKVEGHTDSRPISTYrypsN 170

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 247 QALSQRRADSVKGWLM-KQGIHSDRLVTAGKGETSPVSGNDSASGRQLNRRVEVIIENTD 305
Cdd:PRK06925  171 WELSAARASSVIRYFTsKEKLDSSRFIAVGYADTKPVVPNTTEENMQENRRVEIVISDPT 230
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 201-294 1.44e-20

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 84.33  E-value: 1.44e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 201 FDTGKAELKSGATTNLAKLATFLNQHQNR-SVMIEGHTDTVGNADYNQALSQRRADSVKGWLMKQGIHSDRLVTAGKGET 279
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKnTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 2588149501 280 SPVSGNDSASGRQLN 294
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
PRK09039 PRK09039
peptidoglycan -binding protein;
92-298 2.12e-13

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 69.61  E-value: 2.12e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501  92 AQALAESRLLVEQRTALSQQRETA--RLDSRTKEVDIAR--SNADSARIETLAAQKEVENARSNAESSRLKtlAAQQESA 167
Cdd:PRK09039   91 SAAEAERSRLQALLAELAGAGAAAegRAGELAQELDSEKqvSARALAQVELLNQQIAALRRQLAALEAALD--ASEKRDR 168

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 168 NAQQKAADLQRQ--------IAELNAKPTE-----------RGLVVTLGD-------VLFDTGKAELKSGATTNLAKLAT 221
Cdd:PRK09039  169 ESQAKIADLGRRlnvalaqrVQELNRYRSEffgrlreilgdREGIRIVGDrfvfqseVLFPTGSAELNPEGQAEIAKLAA 248

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 222 FLNQHQ-------NRSVMIEGHTDTV---GNADY--NQALSQRRADSVKGWLMKQGIHSDRLVTAGKGETSPVSGNDSAS 289
Cdd:PRK09039  249 ALIELAkeippeiNWVLRVDGHTDNVplsGTGRFrdNWELSSARAISVVKFLIALGVPADRLAAAGFGEFQPLDPGDTPE 328


                  ....*....
gi 2588149501 290 GRQLNRRVE 298
Cdd:PRK09039  329 ARARNRRIE 337
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 59-186 1.39e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 46.85  E-value: 1.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501  59 KEAEVAVRAAEVSQGDKEQVAHLMYIAERKVDTAQALAESRL---------LVEQRTALSQQRETARLDSRTKEVDIARS 129
Cdd:COG1196   207 RQAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELeeleaeleeLEAELAELEAELEELRLELEELELELEEA 286

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2588149501 130 NAD----SARIETLAAQKEVENARSNAESSRLKTLAAQQESANAQQkaADLQRQIAELNAK 186
Cdd:COG1196   287 QAEeyelLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL--EELEEELEELEEE 345
Borrelia_P83 pfam05262
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
 59-191 3.71e-03

Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.


Pssm-ID: 114011 [Multi-domain]  Cd Length: 489  Bit Score: 38.83  E-value: 3.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501  59 KEAEVAVRAAEVSQGDKEQVAHLMYIAERKVDTAQALAEsrllVEQRTALSQQRETARLD--SRTKEVDIARSNADSARI 136
Cdd:pfam05262 206 RESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNAD----KQRDEVRQKQQEAKNLPkpADTSSPKEDKQVAENQKR 281

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2588149501 137 ETLAAQKEVEN------------ARSNAESSRLKTLAAQQESANAQQK----AADLQRQIAELNAKPTERG 191
Cdd:pfam05262 282 EIEKAQIEIKKndeealkakdhkAFDLKQESKASEKEAEDKELEAQKKrepvAEDLQKTKPQVEAQPTSLN 352
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 198-301 2.09e-42

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 141.92  E-value: 2.09e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 198 DVLFDTGKAELKSGATTNLAKLATFLNQHQNRSVMIEGHTDTVGNADYNQALSQRRADSVKGWLMKQGIHSDRLVTAGKG 277
Cdd:cd07185     3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYG 82

                          90       100
                  ....*....|....*....|....
gi 2588149501 278 ETSPVSGNDSASGRQLNRRVEVII 301
Cdd:cd07185    83 ESRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 167-304 5.88e-42

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 147.24  E-value: 5.88e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 167 ANAQQKAADLQRQIAELNAKPTERGLVVTLGDVLFDTGKAELKSGATTNLAKLATFLNQHQNRSVMIEGHTDTVGNADYN 246
Cdd:COG2885   157 AAALDAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYN 236

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2588149501 247 QALSQRRADSVKGWLMKQGIHSDRLVTAGKGETSPVSGNDSASGRQLNRRVEVIIENT 304
Cdd:COG2885   237 LALSERRAEAVKDYLVSKGIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVVLKK 294
MotB COG1360
Flagellar motor protein MotB [Cell motility];
188-307 1.45e-30

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 113.40  E-value: 1.45e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 188 TERGLVVTLGD-VLFDTGKAELKSGATTNLAKLATFLNQHQNRsVMIEGHTDTV--GNADY--NQALSQRRADSVKGWLM 262
Cdd:COG1360    49 TEEGLVIEIQDrVLFDSGSAELTPEGRELLDKIAAVLAEVPNR-IRVEGHTDNVpiSTARFpsNWELSAARAAAVVRYLI 127

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2588149501 263 KQGIHSDRLVTAGKGETSPVSGNDSASGRQLNRRVEVIIENTDAN 307
Cdd:COG1360   128 EGGVPPERLSAVGYGDTRPLAPNDTPEGRARNRRVEIVILRRAAE 172
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 199-301 4.97e-22

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 88.77  E-value: 4.97e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 199 VLFDTGKAELKSGATTNLAKLATFLNQHQNRSVMIEGHTDTVGNADYNQALSQRRADSVKGWLMKQGIHSDRLVTAGKGE 278
Cdd:TIGR02802   2 VYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYGK 81

                          90       100
                  ....*....|....*....|....
gi 2588149501 279 TSPV-SGNDSASGRQlNRRVEVII 301
Cdd:TIGR02802  82 EKPAaLGHDEAAWAK-NRRAVLVY 104
PRK06925 PRK06925
flagellar motor protein MotB;
172-305 1.22e-20

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 88.67  E-value: 1.22e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 172 KAADLQRQIAelnAKPTERGLVVTLGD-VLFDTGKAELKSGATTNLAKLATFLNQHQNrSVMIEGHTDTVGNADY----N 246
Cdd:PRK06925   95 EENELKSVIT---AKRDERGVVLVLQEaVLFETGEADILKQAEPFLHKIGVLLSTIPN-DIKVEGHTDSRPISTYrypsN 170

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 247 QALSQRRADSVKGWLM-KQGIHSDRLVTAGKGETSPVSGNDSASGRQLNRRVEVIIENTD 305
Cdd:PRK06925  171 WELSAARASSVIRYFTsKEKLDSSRFIAVGYADTKPVVPNTTEENMQENRRVEIVISDPT 230
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 201-294 1.44e-20

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 84.33  E-value: 1.44e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 201 FDTGKAELKSGATTNLAKLATFLNQHQNR-SVMIEGHTDTVGNADYNQALSQRRADSVKGWLMKQGIHSDRLVTAGKGET 279
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKnTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 2588149501 280 SPVSGNDSASGRQLN 294
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
PRK10510 PRK10510
OmpA family lipoprotein;
198-299 3.99e-19

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 84.16  E-value: 3.99e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 198 DVLFDTGKAELKSGATTNLAKLATFLNQHQNRSVMIEGHTDTVGNADYNQALSQRRADSVKGWLMKQGIHSDRLVTAGKG 277
Cdd:PRK10510  113 NVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASRIRTQGMG 192

                          90       100
                  ....*....|....*....|..
gi 2588149501 278 ETSPVSGNDSASGRQLNRRVEV 299
Cdd:PRK10510  193 PANPIASNSTAEGKAQNRRVEI 214
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 161-316 4.80e-19

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 85.06  E-value: 4.80e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 161 AAQQESANAQQKAADLQRQIAELNAK------PTERGLVVTL-GDVLFDTGKAELKSGATTNLAKLATFLNQHQNrSVMI 233
Cdd:PRK09038   90 PDARAQDQLKTIADDLRKALGPLIESgqvtvrRNELWIEIEInSSLLFGSGDAMLSDQAFAILEKVAEVLKPAPN-PIHV 168

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 234 EGHTDTV--GNADY--NQALSQRRADSVKGWLMKQGIHSDRLVTAGKGETSPVSGNDSASGRQLNRRVEVIIentDANVD 309
Cdd:PRK09038  169 EGFTDNVpiATAQFpsNWELSAARAASVVRLLADDGVAPSRLAAVGYGEFQPVADNDTAEGRARNRRVVLVI---LRNLD 245


                  ....*..
gi 2588149501 310 EKISVRN 316
Cdd:PRK09038  246 VRRSLTP 252
motB PRK07734
flagellar motor protein MotB; Reviewed
 125-301 7.19e-19

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 84.41  E-value: 7.19e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 125 DIARSNADSARIETLAAQKEVENARSNAESSR-LKTLAAQQESANAQQKAADLQrqiAELNAKPTERGLVVT-LGDVLFD 202
Cdd:PRK07734   71 DQKPEDEKELSASSLEAEQAKKKEEAEAKKKKeMEELKAVQKKIDQYIKEKQLS---SSLQTKLTEEGLLITiLDNILFD 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 203 TGKAELKSgATTNLAK-LATFLNQHQNRSVMIEGHTDTV--GNADY--NQALSQRRADSVKGWLMKQGIHSDRLVTA-GK 276
Cdd:PRK07734  148 SGKADVRL-EDLPLAKeISNLLVSNPPRNITISGHTDNVpiANAQFasNWELSVMRAVNFMQVLLENKELDPEKFSAkGY 226

                         170       180
                  ....*....|....*....|....*
gi 2588149501 277 GETSPVSGNDSASGRQLNRRVEVII 301
Cdd:PRK07734  227 GEYKPIASNDTAEGRAKNRRVEVLI 251
PRK10808 PRK10808
outer membrane protein A; Reviewed
 198-304 1.32e-18

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 85.13  E-value: 1.32e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 198 DVLFDTGKAELKSGATTNLAKLATFLNQ--HQNRSVMIEGHTDTVGNADYNQALSQRRADSVKGWLMKQGIHSDRLVTAG 275
Cdd:PRK10808  225 DVLFNFNKATLKPEGQQALDQLYSQLSNldPKDGSVVVLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKISARG 304

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2588149501 276 KGETSPVSGN--DSASGRQL-------NRRVEVIIENT 304
Cdd:PRK10808  305 MGKSNPVTGNtcDNVKPRAAlidclapDRRVEIEVKGI 342
PRK07033 PRK07033
DotU family type VI secretion system protein;
193-301 2.71e-16

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 78.94  E-value: 2.71e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 193 VVTL-GDVLFDTGKAELKSGATTNLAKLATFLNQHQNRsVMIEGHTDTV--GNADY--NQALSQRRADSVKGWLMKQGIH 267
Cdd:PRK07033  309 VVTLrGDGLFASASTSVRDRYQPVLARVADALNQVKGN-VLVTGYSDNVpiRTARFpsNWELSQARAQAVRALLAARLGQ 387

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2588149501 268 SDRLVTAGKGETSPVSGNDSASGRQLNRRVEVII 301
Cdd:PRK07033  388 PERVTAEGRGDSDPVAPNDSAENRARNRRVEITL 421
pdsO TIGR03789
proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine ...
 140-297 3.41e-16

proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the pfam00691 domain family, which is the peptidoglycan-associated region of flagellar motor protein MotB, OmpA (whose N-terminal region forms an outer membrane beta barrel), and peptidoglycan-associated lipoprotein Pal. Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274783 [Multi-domain]  Cd Length: 243  Bit Score: 76.38  E-value: 3.41e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 140 AAQKEVENARSNAESSRLKTLAAQQESANAQQKAADLQRQIAELNAKPTERGLVVTlgdVLFDTGKAELKSGATTNLAKL 219
Cdd:TIGR03789  85 QQQQHIAQQRQQMVALTQKQQALEQLEAEYQQAQVHLETLQQDQQQLLEELALGMN---VQFRTGSSDIEPHFQPQLDEV 161

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2588149501 220 ATFLNQHQNRSVMIEGHTDTVGNADYNQALSQRRADSVKGWLMKQGIHSDRLVTAGKGETSPVSGNDSASGRQLNRRV 297
Cdd:TIGR03789 162 ATLMKQSPELKLDLSGYADRRGDSQYNQALSEQRVLEVRSYLIKQGVDEARLTTQAFGESAPLKDEQESESDFFDRRV 239
PRK09967 PRK09967
OmpA family protein;
199-301 8.28e-16

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 73.47  E-value: 8.28e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 199 VLFDTGKAELKSGATTNLAKLATFLNQHQNRSVMIEGHTDTVGNADYNQALSQRRADSV-KGWLMKQGIHSDRLVTAGKG 277
Cdd:PRK09967   54 ILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVaDAWAMGGQIPRSNLTTQGLG 133

                          90       100
                  ....*....|....*....|....
gi 2588149501 278 ETSPVSGNDSASGRQLNRRVEVII 301
Cdd:PRK09967  134 KKYPIASNKTAQGRAENRRVAVVI 157
motB PRK08944
flagellar motor protein MotB; Reviewed
 140-315 3.08e-15

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 74.66  E-value: 3.08e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 140 AAQKEVENARSNAESSRLKTLAAQQESANAQQK--AADLQRQIAElnakpterGLVV--TLGDVL---------FDTGKA 206
Cdd:PRK08944  117 TQQQRGKQRGGEASAEVKAEKAAAQEQIEDLVKklAQQLEKEIED--------GAIEieSLGQQIiirirekgsFPSGSA 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 207 ELKSGATTNLAKLATFLNQHQNRsVMIEGHTD--TVGNADY--NQALSQRRADSVKGWLMK-QGIHSDRLVTAGKGETSP 281
Cdd:PRK08944  189 FLQPKFKPVVRKIGELLKDVPGI-ITVSGHTDnvPISSELYrsNWDLSSARAVAVAHELLKvKGFDPQRLKVVGMADTQP 267

                         170       180       190
                  ....*....|....*....|....*....|....
gi 2588149501 282 VSGNDSASGRQLNRRVEVIIENTDANVDEKISVR 315
Cdd:PRK08944  268 LVPNDTAENRARNRRVEIIIEQGKAKESDEIPVK 301
motB PRK06667
flagellar motor protein MotB; Validated
 189-301 5.15e-15

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 73.29  E-value: 5.15e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 189 ERGLVVTL-GDVLFDTGKAELKSGATTN-LAKLATFLNQH--QNRSVMIEGHTDTV-----GNADYNQALSQRRADSVKG 259
Cdd:PRK06667  116 ERGLVISLaSDAFFYPGSAEVKLEENREtLQKIASFIGFLdlAGRNFRIEGHTDNVdvnpeGPWKSNWELSGARAVNMLE 195

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2588149501 260 WLMKQGIHSD-RLVTAGKGETSPVSGNDSASGRQLNRRVEVII 301
Cdd:PRK06667  196 YILNYGDQSEsWFQVSGFAGSRPLATEDTPEGRAYNRRIDIVI 238
PRK08126 PRK08126
hypothetical protein; Provisional
 190-301 5.52e-14

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 72.03  E-value: 5.52e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 190 RGLVVTLGDVLFDTGKAELKSGATTNLAKLATFLNQHQNRsVMIEGHTDTV--GNADY--NQALSQRRADSVKGWLMKQG 265
Cdd:PRK08126  316 HSSVVFRGDAMFVPGQATVNPAMGPLIAKIAREIARVGGK-VTVTGHTDNQpiRSAQFasNLVLSEKRAAQVAQMLQSAG 394

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2588149501 266 IHSDRLVTAGKGETSPVSGNDSASGRQLNRRVEVII 301
Cdd:PRK08126  395 VPASRLEAVGKGDAQPVADNRTPQGRAQNRRVEITV 430
PRK09039 PRK09039
peptidoglycan -binding protein;
92-298 2.12e-13

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 69.61  E-value: 2.12e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501  92 AQALAESRLLVEQRTALSQQRETA--RLDSRTKEVDIAR--SNADSARIETLAAQKEVENARSNAESSRLKtlAAQQESA 167
Cdd:PRK09039   91 SAAEAERSRLQALLAELAGAGAAAegRAGELAQELDSEKqvSARALAQVELLNQQIAALRRQLAALEAALD--ASEKRDR 168

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 168 NAQQKAADLQRQ--------IAELNAKPTE-----------RGLVVTLGD-------VLFDTGKAELKSGATTNLAKLAT 221
Cdd:PRK09039  169 ESQAKIADLGRRlnvalaqrVQELNRYRSEffgrlreilgdREGIRIVGDrfvfqseVLFPTGSAELNPEGQAEIAKLAA 248

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 222 FLNQHQ-------NRSVMIEGHTDTV---GNADY--NQALSQRRADSVKGWLMKQGIHSDRLVTAGKGETSPVSGNDSAS 289
Cdd:PRK09039  249 ALIELAkeippeiNWVLRVDGHTDNVplsGTGRFrdNWELSSARAISVVKFLIALGVPADRLAAAGFGEFQPLDPGDTPE 328


                  ....*....
gi 2588149501 290 GRQLNRRVE 298
Cdd:PRK09039  329 ARARNRRIE 337
motB PRK08457
flagellar motor protein MotB; Reviewed
 131-307 3.57e-13

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 68.20  E-value: 3.57e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 131 ADSARIETLAAQKEVENARSNAESSRLKTLAAQQesANAQQKAADLQRQIAELNAKptERGLVVTL-GDVLFDTGKAELK 209
Cdd:PRK08457   59 TAKPEVKQPVKVIPPDSGDAEEEMDELKSLKASQ--NTQQETIERRKGEGGALDQI--DNGIALKLpSKLLFENGSAEII 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 210 SGATTN----LAKLATFLNQhqNRSVMIEGHTDT--VGNADY--NQALSQRRADSVKGWLMKQGIHSDRLVTAGKGETSP 281
Cdd:PRK08457  135 NADMMDylkrIAKIITKLPK--QVKINVRGYTDNspLNKSRYkdHYELAAARAYNVMKVLIQYGINPNRLSFSSYGSNNP 212

                         170       180
                  ....*....|....*....|....*.
gi 2588149501 282 VSGNDSASGRQLNRRVEvIIENTDAN 307
Cdd:PRK08457  213 IAPNDSLENRLKNNRVE-IFFKVDAN 237
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 180-302 9.82e-11

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 60.85  E-value: 9.82e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 180 IAELNAKPTERGL-VVTLGDVLFDTGKAELKSGATTNLAKLATFLNQHQNrSVMIEGHTDT--VGNADY--NQALSQRRA 254
Cdd:PRK06742   97 ISQVNVYREDTGVsVVIVDNLIFDTGDANVKPEAKEIISQLVGFFQSVPN-PIVVEGHTDSrpIHNDKFpsNWELSSARA 175

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 2588149501 255 DSVKGWLMK-QGIHSDRLVTAGKGETSPVSGNDSASGRQLNRRVEVIIE 302
Cdd:PRK06742  176 ANMIHHLIEvYNVDDKRLAAVGYADTKPVVPNDSPQNWEKNRRVVIYIK 224
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
199-296 5.24e-10

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 57.57  E-value: 5.24e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 199 VLFDTGKAELKSGATTNLAKLATFLNQHQNRSVMIEGHTDTVGNADYNQALSQRRADSVKGWLMKQGIHSDRLVTAGKGE 278
Cdd:PRK10802   71 VYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGK 150

                          90
                  ....*....|....*....
gi 2588149501 279 TSP-VSGNDSASGRQlNRR 296
Cdd:PRK10802  151 EKPaVLGHDEAAYAK-NRR 168
PRK09040 PRK09040
hypothetical protein; Provisional
 167-299 1.39e-09

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 56.95  E-value: 1.39e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 167 ANAQQKAADLQRQIA--ELNAKPTERGLVvTL--------GDVLFD--------TGKAELKSGAttnlAKLATFLNQHqN 228
Cdd:PRK09040   49 AEVKQRQAEAQRRKTleQALAGPLAAGRV-TLvngrigisGSVLFAlnsdqlqpEGRELLKSLA----GPLAAYLRAR-D 122

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2588149501 229 RSVMIEGHTD----TVGNADY--NQALSQRRADSVKGWLMKQGIHSDRLVTAGKGETSPVSGNDSASGRQLNRRVEV 299
Cdd:PRK09040  123 EILMVSGFTDdqpvRAGNRRFadNWELSAQRALTVTRALIDAGVPASSVFAAAFGSEQPVASNADDEGRAKNRRVEI 199
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 59-186 1.39e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 46.85  E-value: 1.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501  59 KEAEVAVRAAEVSQGDKEQVAHLMYIAERKVDTAQALAESRL---------LVEQRTALSQQRETARLDSRTKEVDIARS 129
Cdd:COG1196   207 RQAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELeeleaeleeLEAELAELEAELEELRLELEELELELEEA 286

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2588149501 130 NAD----SARIETLAAQKEVENARSNAESSRLKTLAAQQESANAQQkaADLQRQIAELNAK 186
Cdd:COG1196   287 QAEeyelLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL--EELEEELEELEEE 345
motB PRK05996
MotB family protein;
129-302 2.68e-05

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 45.46  E-value: 2.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 129 SNADSARIETLAAQKEVE-NARSNAESSRLKTLAAQQESANAQQKAADLQRQIAELNAK--------PTERGLVVTLGDV 199
Cdd:PRK05996  233 KKAATEEELIADAKKAATgEPAANAAKAAKPEPMPDDQQKEAEQLQAAIAQAIGGVAGKlaegvtvtPVEGGLLISLTDQ 312

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 200 ----LFDTGKAELKSGATTNLAKLATFLNQHQNrSVMIEGHTDT--VGNADY-NQALSQRRADSVKGWLMKQGIHSDRLV 272
Cdd:PRK05996  313 vdygMFAIGSAVPRAELVLAMEKIGQLLAERPG-AVIIRGHTDArpFKSATYdNWRLSTARAQSAYYMLVRGGLDEKRIE 391

                         170       180       190
                  ....*....|....*....|....*....|.
gi 2588149501 273 -TAGKGETSPVSGNDSASGRqlNRRVEVIIE 302
Cdd:PRK05996  392 qVEGFADRRPKLPNDPNAAA--NRRIEILIQ 420
PTZ00121 PTZ00121
MAEBL; Provisional
 26-189 3.43e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 45.52  E-value: 3.43e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501   26 ARQIQPEAVNNARSKLTMLQSNQPLASQAPVaikEAEVAVRAAEVSQGDKEQVAHLMYIAE--RKVDTAQALAESRLLVE 103
Cdd:PTZ00121  1242 AKKAEEERNNEEIRKFEEARMAHFARRQAAI---KAEEARKADELKKAEEKKKADEAKKAEekKKADEAKKKAEEAKKAD 1318

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501  104 QRTALSQQRETaRLDSRTKEVDIARSNADSARIETLAAQKEVENARSNAESSRLKTLAAQQEsANAQQKAADLQRQIAEL 183
Cdd:PTZ00121  1319 EAKKKAEEAKK-KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK-ADAAKKKAEEKKKADEA 1396


                   ....*.
gi 2588149501  184 NAKPTE 189
Cdd:PTZ00121  1397 KKKAEE 1402
motB PRK09041
motility protein MotB;
125-306 1.56e-04

motility protein MotB;


Pssm-ID: 236365 [Multi-domain]  Cd Length: 317  Bit Score: 42.62  E-value: 1.56e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 125 DIARSNADSARIETLAAQKEVENARsnAESSRLKTLAAQ-QESANAQQKAADLQRQIA-ELnakpTERGLVVTLGDV--- 199
Cdd:PRK09041   89 DITQQDGEVNKQPNIAELAQGEKER--REQERLEKLKQElDQAIESNPKLRQFKPQLLiDL----TQEGLRIQIVDSqnr 162

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 200 -LFDTGKAELKSGATTNLAKLATFLNQHQNRsVMIEGHTDTV----GNADY-NQALSQRRADSVKGWLMKQGIHSD---R 270
Cdd:PRK09041  163 pMFATGSAEVEPYMRDILREIAPVLNDVPNR-ISLSGHTDATpyanGEKGYsNWELSADRANASRRELVAGGMDEGkvlR 241

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 2588149501 271 LVtaGKGETSPVSGNDSASgrQLNRRVEVIIENTDA 306
Cdd:PRK09041  242 VV--GLASTMLLDKKDPLN--PVNRRISIVVLNKKA 273
PRK14693 PRK14693
hypothetical protein; Provisional
 192-300 1.74e-03

hypothetical protein; Provisional


Pssm-ID: 173156 [Multi-domain]  Cd Length: 552  Bit Score: 39.75  E-value: 1.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 192 LVVTLGDVLFDTGKAELKSGATTNLAKLA-TFLNQHQNRSVMieGHTDT--VGNADY--NQALSQRRADSVKGWLMKQGI 266
Cdd:PRK14693  367 LLVFKSDGAFDVGKANVRADFMHNIERLGlAFAPWPGDLEVI--GHTDSrpIRTSEFpdNQALSEARARNVADELRKTAL 444

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 2588149501 267 HSD----------RLVTAGKGETSPVSGNDSASGRQLNRRVEVI 300
Cdd:PRK14693  445 PGGarapenavqrNIEYSGRGDAQPIDTAKTAAAYERNRRVDVL 488
PRK07034 PRK07034
hypothetical protein; Provisional
 183-300 2.65e-03

hypothetical protein; Provisional


Pssm-ID: 168775 [Multi-domain]  Cd Length: 536  Bit Score: 39.39  E-value: 2.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501 183 LNAKPTERG-LVVTLGDVLFDTGKAELKSG--ATTNLAKLATFLNQHQNrSVMIEGHTD------TVGNAdyNQALSQRR 253
Cdd:PRK07034  379 LEVRKDPRGwLLIFTSDGAFRTGEATLSEEfiNKKNIERLGLALAPWPG-DIEVIGHTDnkpfrsTSGNN--NLKLSAAR 455

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2588149501 254 ADSVKGWLMKQG----IHSDRLVTAGKGETSPVSGNDSASGRQLNRRVEVI 300
Cdd:PRK07034  456 ASVVADKLRESTqineTHQREISAIGRGESDPLADNATEEGRKRNRRVDIL 506
Borrelia_P83 pfam05262
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
 59-191 3.71e-03

Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.


Pssm-ID: 114011 [Multi-domain]  Cd Length: 489  Bit Score: 38.83  E-value: 3.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2588149501  59 KEAEVAVRAAEVSQGDKEQVAHLMYIAERKVDTAQALAEsrllVEQRTALSQQRETARLD--SRTKEVDIARSNADSARI 136
Cdd:pfam05262 206 RESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNAD----KQRDEVRQKQQEAKNLPkpADTSSPKEDKQVAENQKR 281

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2588149501 137 ETLAAQKEVEN------------ARSNAESSRLKTLAAQQESANAQQK----AADLQRQIAELNAKPTERG 191
Cdd:pfam05262 282 EIEKAQIEIKKndeealkakdhkAFDLKQESKASEKEAEDKELEAQKKrepvAEDLQKTKPQVEAQPTSLN 352
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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