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Conserved domains on  [gi|2562489835|ref|WP_305769752|]
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MULTISPECIES: IS1 family transposase, partial [Enterobacteriaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Zn_Tnp_IS1 super family cl09312
InsA N-terminal domain; This appears to be a short zinc binding domain found in IS1 InsA ...
 1-27 6.72e-04

InsA N-terminal domain; This appears to be a short zinc binding domain found in IS1 InsA family protein. It is found at the N-terminus of the protein and may be a DNA-binding domain.


The actual alignment was detected with superfamily member pfam03811:

Pssm-ID: 281762 [Multi-domain]  Cd Length: 35  Bit Score: 31.41  E-value: 6.72e-04
                         10        20
                 ....*....|....*....|....*..
gi 2562489835  1 MASISIRCPSCSATEgVVRNGKSTAGH 27
Cdd:pfam03811  1 MASVSIHCPRCSSTD-VYRHGKSTAGH 26
 
Name Accession Description Interval E-value
Zn_Tnp_IS1 pfam03811
InsA N-terminal domain; This appears to be a short zinc binding domain found in IS1 InsA ...
 1-27 6.72e-04

InsA N-terminal domain; This appears to be a short zinc binding domain found in IS1 InsA family protein. It is found at the N-terminus of the protein and may be a DNA-binding domain.


Pssm-ID: 281762 [Multi-domain]  Cd Length: 35  Bit Score: 31.41  E-value: 6.72e-04
                         10        20
                 ....*....|....*....|....*..
gi 2562489835  1 MASISIRCPSCSATEgVVRNGKSTAGH 27
Cdd:pfam03811  1 MASVSIHCPRCSSTD-VYRHGKSTAGH 26
 
Name Accession Description Interval E-value
Zn_Tnp_IS1 pfam03811
InsA N-terminal domain; This appears to be a short zinc binding domain found in IS1 InsA ...
 1-27 6.72e-04

InsA N-terminal domain; This appears to be a short zinc binding domain found in IS1 InsA family protein. It is found at the N-terminus of the protein and may be a DNA-binding domain.


Pssm-ID: 281762 [Multi-domain]  Cd Length: 35  Bit Score: 31.41  E-value: 6.72e-04
                         10        20
                 ....*....|....*....|....*..
gi 2562489835  1 MASISIRCPSCSATEgVVRNGKSTAGH 27
Cdd:pfam03811  1 MASVSIHCPRCSSTD-VYRHGKSTAGH 26
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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