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Conserved domains on  [gi|2535556020|ref|WP_292363962|]
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MULTISPECIES: iron ABC transporter permease [unclassified Methylophaga]

Protein Classification

ABC transporter permease( domain architecture ID 11439550)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0055085|GO:0140359|GO:0042626|GO:0016020
PubMed:  31571164|27273632|26517919|18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
2-526 2.10e-137

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 408.40  E-value: 2.10e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020   2 AIILSMPVIVVLAHVFVP-SGDIWQHLSTTVLPDYIRNSLLLMLGVAIGTLLIGVTTAWLTTMCQFPGRSVFEWALLLPM 80
Cdd:COG1178    21 ALLVLLPLLALLLRAFTDgLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPL 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020  81 AMPAYIIAYTYTGMLDFAGPVQMALRDWFGWQygdywFPQIRSLNGAVAMLTLVLYPYVYLLSRAAFLNQSICVLDVSRT 160
Cdd:COG1178   101 ALPPYVVALAWIALFGPNGLLNTLLRALFGLE-----PPDIYGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARS 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 161 LGNGPWKTFWRVALPLARPAIIAGLSLALMETLADYGTVQFFG--VSTFTTGIFRTWFGMGSAAAAAQLAAGLMVFVFAL 238
Cdd:COG1178   176 LGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGggYTTLTTAIYQAWLGDFDLGAAAALALVLLLLVLLL 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 239 IIVERYSRRKARYHHTSRRHQDLRRFQLtGSRALLAFCFCMLILSLGFLLPAIQLLSWTI-----------HVADTVIDA 307
Cdd:COG1178   256 LLLERRLRRRRRYATVGGRARRPRRVKL-GRWRWLALALCLLLVLLGLLLPLLALLLWSLtkalddnltldNYRFVLLDP 334

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 308 AFMRLLMNSLSLAAFAAVLALVLAIIMAYAQRLYPGKLVSGAVRVAGMGYAVPGAVIAVGVMIPFAWIDntlddlarshf 387
Cdd:COG1178   335 SLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPL----------- 403

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 388 dfstGLLLSGTLVAVTFAYLTRFLAVSLQTVDSGLTRITHSMDEAGRSFGFRPLQILRQIHIPMLSASLMTALLLVFVDV 467
Cdd:COG1178   404 ----PLLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTS 479

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2535556020 468 LKELPATLILRPFNFNTLAVKAYELASDERLAEAAPAALAIVIAGIIPVILLSKTITRS 526
Cdd:COG1178   480 MKELSATLLLRPPGFETLAVLIYQLASSGRYGEAAALALLLVLVSLLPVLLLERLLGRR 538
 
Name Accession Description Interval E-value
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
2-526 2.10e-137

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 408.40  E-value: 2.10e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020   2 AIILSMPVIVVLAHVFVP-SGDIWQHLSTTVLPDYIRNSLLLMLGVAIGTLLIGVTTAWLTTMCQFPGRSVFEWALLLPM 80
Cdd:COG1178    21 ALLVLLPLLALLLRAFTDgLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPL 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020  81 AMPAYIIAYTYTGMLDFAGPVQMALRDWFGWQygdywFPQIRSLNGAVAMLTLVLYPYVYLLSRAAFLNQSICVLDVSRT 160
Cdd:COG1178   101 ALPPYVVALAWIALFGPNGLLNTLLRALFGLE-----PPDIYGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARS 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 161 LGNGPWKTFWRVALPLARPAIIAGLSLALMETLADYGTVQFFG--VSTFTTGIFRTWFGMGSAAAAAQLAAGLMVFVFAL 238
Cdd:COG1178   176 LGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGggYTTLTTAIYQAWLGDFDLGAAAALALVLLLLVLLL 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 239 IIVERYSRRKARYHHTSRRHQDLRRFQLtGSRALLAFCFCMLILSLGFLLPAIQLLSWTI-----------HVADTVIDA 307
Cdd:COG1178   256 LLLERRLRRRRRYATVGGRARRPRRVKL-GRWRWLALALCLLLVLLGLLLPLLALLLWSLtkalddnltldNYRFVLLDP 334

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 308 AFMRLLMNSLSLAAFAAVLALVLAIIMAYAQRLYPGKLVSGAVRVAGMGYAVPGAVIAVGVMIPFAWIDntlddlarshf 387
Cdd:COG1178   335 SLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPL----------- 403

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 388 dfstGLLLSGTLVAVTFAYLTRFLAVSLQTVDSGLTRITHSMDEAGRSFGFRPLQILRQIHIPMLSASLMTALLLVFVDV 467
Cdd:COG1178   404 ----PLLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTS 479

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2535556020 468 LKELPATLILRPFNFNTLAVKAYELASDERLAEAAPAALAIVIAGIIPVILLSKTITRS 526
Cdd:COG1178   480 MKELSATLLLRPPGFETLAVLIYQLASSGRYGEAAALALLLVLVSLLPVLLLERLLGRR 538
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 2-199 1.86e-15

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 76.62  E-value: 1.86e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020   2 AIILSMPVIVVLAHVFVPS-GDIWQHLSTTVLPDYIRNSLLLMLGVAIGTLLIGVTTAWLTTMCQFPGRSVFEWALLLPM 80
Cdd:TIGR00969  27 FLILILPVAALFVQAFSKGlGQFWQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALIDLPF 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020  81 AMPAYIIAYTYTGMLDFAGpvqmalrdWFGWQYGDYWFPQIRSLNGAVAMLTLVLYPYVYLLSRAAFLNQSICVLDVSRT 160
Cdd:TIGR00969 107 ALSPVVAGLTLALLYGSNG--------WLGSWLASFGIQIIFTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAAT 178

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2535556020 161 LGNGPWKTFWRVALPLARPAIIAGLSLALMETLADYGTV 199
Cdd:TIGR00969 179 LGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAV 217
modB PRK09421
molybdate ABC transporter permease subunit;
32-201 6.43e-15

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 74.19  E-value: 6.43e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020  32 LPDYIRNSLLLMLGVA----IGTLLIGVTTAWLTTMCQFPGRSVFEWALLLPMAMPAYIIAYTYTGMLDFAGPVQMALRD 107
Cdd:PRK09421    3 LSDPEWQAVLLSLKVSsvavLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLYE 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 108 WFGWQYGDYWfpqirslNGAVAMLTLVLYPYVYLLSRAAFLNQSICVLDVSRTLGNGPWKTFWRVALPLARPAIIAGLSL 187
Cdd:PRK09421   83 WFGISFAFSW-------RGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVL 155

                         170
                  ....*....|....*
gi 2535556020 188 ALMETLADYG-TVQF 201
Cdd:PRK09421  156 AFARSLGEFGaTITF 170
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 36-241 7.75e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 64.22  E-value: 7.75e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020  36 IRNSLLLMLGVAIGTLLIGVTTAWLTTMCQFPGRSVFEWALLLPMAMPAYIIAYTYTGMLDFAGPvqmalrdwfGWQYGD 115
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG---------WGILPG 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 116 YWFPqirslngAVAMLTLVLYPYVYLLSRAAFLNQSICVLDVSRTLGNGPWKTFWRVALPLARPAIIAGLSLALMETLAD 195
Cdd:cd06261    72 LGLP-------ALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGE 144

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 2535556020 196 YGTVQFFGVSTFTTGIFRTWFGMGSAAAAAQLAAGLMVFVFALIIV 241
Cdd:cd06261   145 FALVSFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 126-240 1.41e-04

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 42.67  E-value: 1.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 126 GAVAMLTLVLYPYVYLLSRAAFLNQSICVLDVSRTLGNGPWKTFWRVALPLARPAIIAGLSLALMETLADYGTVQFFGVS 205
Cdd:pfam00528  54 PAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSW 133

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2535556020 206 T--FTTGIFRTWFGMGSAAAAAQLAAGLMVFVFALII 240
Cdd:pfam00528 134 PglGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLV 170
 
Name Accession Description Interval E-value
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
2-526 2.10e-137

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 408.40  E-value: 2.10e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020   2 AIILSMPVIVVLAHVFVP-SGDIWQHLSTTVLPDYIRNSLLLMLGVAIGTLLIGVTTAWLTTMCQFPGRSVFEWALLLPM 80
Cdd:COG1178    21 ALLVLLPLLALLLRAFTDgLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPL 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020  81 AMPAYIIAYTYTGMLDFAGPVQMALRDWFGWQygdywFPQIRSLNGAVAMLTLVLYPYVYLLSRAAFLNQSICVLDVSRT 160
Cdd:COG1178   101 ALPPYVVALAWIALFGPNGLLNTLLRALFGLE-----PPDIYGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARS 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 161 LGNGPWKTFWRVALPLARPAIIAGLSLALMETLADYGTVQFFG--VSTFTTGIFRTWFGMGSAAAAAQLAAGLMVFVFAL 238
Cdd:COG1178   176 LGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGggYTTLTTAIYQAWLGDFDLGAAAALALVLLLLVLLL 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 239 IIVERYSRRKARYHHTSRRHQDLRRFQLtGSRALLAFCFCMLILSLGFLLPAIQLLSWTI-----------HVADTVIDA 307
Cdd:COG1178   256 LLLERRLRRRRRYATVGGRARRPRRVKL-GRWRWLALALCLLLVLLGLLLPLLALLLWSLtkalddnltldNYRFVLLDP 334

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 308 AFMRLLMNSLSLAAFAAVLALVLAIIMAYAQRLYPGKLVSGAVRVAGMGYAVPGAVIAVGVMIPFAWIDntlddlarshf 387
Cdd:COG1178   335 SLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPL----------- 403

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 388 dfstGLLLSGTLVAVTFAYLTRFLAVSLQTVDSGLTRITHSMDEAGRSFGFRPLQILRQIHIPMLSASLMTALLLVFVDV 467
Cdd:COG1178   404 ----PLLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTS 479

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2535556020 468 LKELPATLILRPFNFNTLAVKAYELASDERLAEAAPAALAIVIAGIIPVILLSKTITRS 526
Cdd:COG1178   480 MKELSATLLLRPPGFETLAVLIYQLASSGRYGEAAALALLLVLVSLLPVLLLERLLGRR 538
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 36-203 9.22e-17

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 79.32  E-value: 9.22e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020  36 IRNSLLLMLGVAIGTLLIGVTTAWLTTMCQFPGRSVFEWALLLPMAMPAYIIAYTYTGMLDFAGPVQMALRDWFGWQYgd 115
Cdd:COG4149     9 LWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLEELFGISL-- 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 116 ywfpqIRSLNGAVAMLTLVLYPYVYLLSRAAFLNQSICVLDVSRTLGNGPWKTFWRVALPLARPAIIAGLSLALMETLAD 195
Cdd:COG4149    87 -----VFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALGE 161


                  ....*...
gi 2535556020 196 YGTVQFFG 203
Cdd:COG4149   162 FGATLMFA 169
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 1-203 4.87e-16

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 78.25  E-value: 4.87e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020   1 MAIILSMPVIVVLAHVFVPS-GDIWQHLSTTVLPDYIRNSLLLMLGVAIGTLLIGVTTAWLTTMCQFPGRSVFEWALLLP 79
Cdd:COG0555    20 LSLIVLLPLAALVLKAAGLGwAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRLVDALVDLP 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020  80 MAMP------AYIIAYTYTGmldfagpvqmalrdWFGWQYGDYWFPQIRSLNGAVAMLTLVLYPYVYLLSRAAFLNQSIC 153
Cdd:COG0555   100 FALPtavagiALLLLFGPNG--------------WLGQLLAPLGIKVAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPE 165

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 2535556020 154 VLDVSRTLGNGPWKTFWRVALPLARPAIIAGLSLALMETLADYGTVQFFG 203
Cdd:COG0555   166 LEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIA 215
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 2-199 1.86e-15

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 76.62  E-value: 1.86e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020   2 AIILSMPVIVVLAHVFVPS-GDIWQHLSTTVLPDYIRNSLLLMLGVAIGTLLIGVTTAWLTTMCQFPGRSVFEWALLLPM 80
Cdd:TIGR00969  27 FLILILPVAALFVQAFSKGlGQFWQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALIDLPF 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020  81 AMPAYIIAYTYTGMLDFAGpvqmalrdWFGWQYGDYWFPQIRSLNGAVAMLTLVLYPYVYLLSRAAFLNQSICVLDVSRT 160
Cdd:TIGR00969 107 ALSPVVAGLTLALLYGSNG--------WLGSWLASFGIQIIFTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAAT 178

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2535556020 161 LGNGPWKTFWRVALPLARPAIIAGLSLALMETLADYGTV 199
Cdd:TIGR00969 179 LGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAV 217
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 50-203 2.15e-15

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 74.97  E-value: 2.15e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020  50 TLLIGVTTAWLTTMCQFPGRSVFEWALLLPMAMPAYIIAYTYTGMLDFAGPVQMALrDWFGwqygdywFPQIRSLNGAVA 129
Cdd:TIGR02141  14 LLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGKLL-ELFG-------ISLVFTFTGAVL 85

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2535556020 130 MLTLVLYPYVYLLSRAAFLNQSICVLDVSRTLGNGPWKTFWRVALPLARPAIIAGLSLALMETLADYGTVQFFG 203
Cdd:TIGR02141  86 ASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFA 159
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 36-250 3.43e-15

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 75.53  E-value: 3.43e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020  36 IRNSLLLMLGVAIGTLLIGVTTAWLTTMCQFPGRSVFEWALLLPMAMPAYIIAytyTGMLDFAGPVQMALrdwfgwqygd 115
Cdd:COG1177    63 LLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLG---VALLLLFSALGLSG---------- 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 116 ywfpqirSLNGAVAMLTLVLYPYVYLLSRAAFLNQSICVLDVSRTLGNGPWKTFWRVALPLARPAIIAGLSLALMETLAD 195
Cdd:COG1177   130 -------GLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDE 202

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2535556020 196 YGTVQF---FGVSTFTTGIFRtwfGMGSAAAAAQLAAGLMVFVF---ALIIVERYSRRKAR 250
Cdd:COG1177   203 FVITLFlagPGVTTLPVYIYS---MIRRGISPEINALSTLLILLsllLLLLAERLRRRGER 260
modB PRK09421
molybdate ABC transporter permease subunit;
32-201 6.43e-15

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 74.19  E-value: 6.43e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020  32 LPDYIRNSLLLMLGVA----IGTLLIGVTTAWLTTMCQFPGRSVFEWALLLPMAMPAYIIAYTYTGMLDFAGPVQMALRD 107
Cdd:PRK09421    3 LSDPEWQAVLLSLKVSsvavLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLYE 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 108 WFGWQYGDYWfpqirslNGAVAMLTLVLYPYVYLLSRAAFLNQSICVLDVSRTLGNGPWKTFWRVALPLARPAIIAGLSL 187
Cdd:PRK09421   83 WFGISFAFSW-------RGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVL 155

                         170
                  ....*....|....*
gi 2535556020 188 ALMETLADYG-TVQF 201
Cdd:PRK09421  156 AFARSLGEFGaTITF 170
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 22-209 2.73e-12

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 66.27  E-value: 2.73e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020  22 DIWQHLSTTVLPDYIRNSLLLMLGVAIGTLLIGVTTAWLTTMCQFPGRSVFEWALLLPMAMPAYIiayTYTGMLDFAGPV 101
Cdd:TIGR01581   9 HILSALTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLV---AGLALLLLFGRN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 102 QMalrdwFGWQYGDYWFPQIRSLNGAVAMLTLVLYPYVYLLSRAAFLNQSICVLDVSRTLGNGPWKTFWRVALPLARPAI 181
Cdd:TIGR01581  86 GL-----LGPYLEAAGIQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGL 160

                         170       180
                  ....*....|....*....|....*....
gi 2535556020 182 IAGLSLALMETLADYG-TVQFFGVSTFTT 209
Cdd:TIGR01581 161 LAGLVLAWARALGEFGaTLMFAGSIQGKT 189
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 36-203 3.67e-12

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 67.09  E-value: 3.67e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020  36 IRNSLLLMLGVAIGTLLIGVTTAWLTTMCQFPGRSVFEWALLLPMAMPAYIIAYTYTGMLDFAGPVQMALRdWFGWQygD 115
Cdd:COG1176    69 LLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLL-ALGLI--D 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 116 YWFPQIRSLNGAVAMLTLVLYPYVYLLSRAAFLNQSICVLDVSRTLGNGPWKTFWRVALPLARPAIIAGLSLALMETLAD 195
Cdd:COG1176   146 EPLRLLYTEFAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGA 225


                  ....*...
gi 2535556020 196 YGTVQFFG 203
Cdd:COG1176   226 FVTPALLG 233
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 36-241 7.75e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 64.22  E-value: 7.75e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020  36 IRNSLLLMLGVAIGTLLIGVTTAWLTTMCQFPGRSVFEWALLLPMAMPAYIIAYTYTGMLDFAGPvqmalrdwfGWQYGD 115
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG---------WGILPG 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 116 YWFPqirslngAVAMLTLVLYPYVYLLSRAAFLNQSICVLDVSRTLGNGPWKTFWRVALPLARPAIIAGLSLALMETLAD 195
Cdd:cd06261    72 LGLP-------ALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGE 144

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 2535556020 196 YGTVQFFGVSTFTTGIFRTWFGMGSAAAAAQLAAGLMVFVFALIIV 241
Cdd:cd06261   145 FALVSFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 2-203 7.85e-11

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 63.10  E-value: 7.85e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020   2 AIILSMPVIVVLAHVFV----------------PSGDIWQH-LSTTVLPDYIRNSLLLMLGVAIGTLLIGVTTAWLTTMC 64
Cdd:PRK15050   24 PLLWLLLPLLVLAPLVVyplvrvvlqsltgehgLGLATYRAvLGSPDFRGALLTTLQIAFASTAGCLVLGVLLALVLAFV 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020  65 QFPGRSVFEWALLLPMAMPAYIIAYTYTGMLDFAGPVQMALRDWFGWQYGDYWFpqIRSLNGAVAMLTLVLYPYVYLLSR 144
Cdd:PRK15050  104 PFPGASLVGRFIDTFVAFPSFLITLAFTFLYGSAGSVNIALQRLFGLEAPPLDF--LYSPGGVILAEITFYTPFVVRPLL 181

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2535556020 145 AAFLNQSICVLDVSRTLGNGPWKTFWRVALPLARPAIIAGLSLALMETLADYGTVQFFG 203
Cdd:PRK15050  182 AAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTG 240
permease_CysW TIGR02140
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two ...
 1-199 2.51e-09

sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 162725  Cd Length: 261  Bit Score: 58.17  E-value: 2.51e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020   1 MAIILSMPVIVVLAHVFvpSGDIWQHLSTTVLPDYIRNSLLLMLGVAIG---TLLIGVTTAWLTTMCQFPGRSVFEWALL 77
Cdd:TIGR02140  13 LFLLLLLPLALIFQEAF--EKGFGVFFAAISDPDALSAIKLTLLVALIVvplNTVFGVCAAWVLTRFQFPGKRLLLTIID 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020  78 LPMAMPAYIIAYTYTGMLDFAGpvqmalrdWFGWQYGDYWFPQIRSLNGAVAMLTLVLYPYVyllsraafLNQSICVLDV 157
Cdd:TIGR02140  91 LPFSVSPVVAGLIFVLLYGSQG--------WLGPWLEDLDIKIIFSLPGIVLATMFVTCPFV--------ARELIPVMEE 154

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 2535556020 158 --------SRTLGNGPWKTFWRVALPLARPAIIAGLSLALMETLADYGTV 199
Cdd:TIGR02140 155 qgteqeeaALTLGASWWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAV 204
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
41-201 1.81e-08

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 55.92  E-value: 1.81e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020  41 LLMLGVA-IGTLLIGVTTAWLTTMCQFPGRSVFEWALLLPMAMPAYIIAYTYTGMLDFAGpvqmalrdWFGWQYGDYWFP 119
Cdd:PRK10971   64 LLSAFVAsIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNG--------WYGEWLAKFDIK 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 120 QIRSLNGAVAMLTLVLYPYVYLLSRAAFLNQSICVLDVSRTLGNGPWKTFWRVALPLARPAIIAGLSLALMETLADYGTV 199
Cdd:PRK10971  136 VTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAV 215


                  ..
gi 2535556020 200 QF 201
Cdd:PRK10971  216 IF 217
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
36-199 2.24e-08

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 55.53  E-value: 2.24e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020  36 IRNSLLLMLGVAIGTLLIGVTTAWLTTMcQFPGRSVFEWALLLPMAMPAYIIAYTYTGMLDF-AGPVQMALRdWFGWQYG 114
Cdd:COG1175    78 LGNTLLFTVVSVPLQLVLGLLLALLLNR-KLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPdYGLLNALLG-ALGLEPI 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 115 DyWFpqirsLNGAVAMLTLVLY------PYVYLLSRAAFLNQSICVLDVSRTLGNGPWKTFWRVALPLARPAIIAGLSLA 188
Cdd:COG1175   156 N-WL-----GDPSLALPAVIIVtvwkgtGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLS 229

                         170
                  ....*....|.
gi 2535556020 189 LMETLADYGTV 199
Cdd:COG1175   230 TIGALQVFDLV 240
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 357-490 4.25e-08

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 54.35  E-value: 4.25e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 357 YAVPGAVIAVGVMIPFAWIDntlddlarshfdfstgllLSGTLVAVTFAYLTRFLAVSLQTVDSGLTRITHSMDEAGRSF 436
Cdd:COG1177   107 LVVPGIVLGVALLLLFSALG------------------LSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDL 168

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2535556020 437 GFRPLQILRQIHIPMLSASLMTALLLVFVDVLKELPATLILRPFNFNTLAVKAY 490
Cdd:COG1177   169 GASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIY 222
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 1-288 6.01e-08

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 55.46  E-value: 6.01e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020   1 MAIILSMPVIVVLAHVFVPSGDIW-------QHLSTTVLPDYIRNSLLLMLGVAIGTLLIGVTTAWLTTMCQFPGRSVFE 73
Cdd:TIGR03262  14 LLLFLLLPLLALLTKSVYDSDGDFiglanfaEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFR 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020  74 WALLLPMAMPA--YIIAYTYTgmldFAGpvQMALRDWFGWqYGDYWFPqirslnGAVAMLTLVLYPYVYLLSRAAFLNQS 151
Cdd:TIGR03262  94 LVALLPLLAPSllPAISLIYL----FGN--QGLLKGLLGG-FSIYGFW------GIVIGEVFYTFPHALMILVTALSLAD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 152 ICVLDVSRTLGNGPWKTFWRVALPLARPAIIAGLSLALMETLADYGTVQFFG-------VSTFTTGIFRTWFGMGSAAAA 224
Cdd:TIGR03262 161 GRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGgdynvlaTDIYKQVIGQQNFPMGAVVGV 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2535556020 225 AQLAAGLMVFvfaliIVERYSRRKARYHHTSRRHQdlrrFQLTGSRALLAFCFCMLILSLGFLL 288
Cdd:TIGR03262 241 LLLLPALLAF-----GIDRAIQRRQRAQLSSRSVP----YQPKPNRVRDAACLVYCAIISAALL 295
cysT CHL00187
sulfate transport protein; Provisional
 1-199 1.21e-07

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 52.71  E-value: 1.21e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020   1 MAIILSMPVIVVLAHVF-VPSGDIWQHLSTTVLPDYIRNSLLLMLGVAIGTLLIGVTTAWLTTMCQFPGRSVFEWALLLP 79
Cdd:CHL00187   21 IIFLLVLPILALLIKASqQPWSDFLQKATEPIALSAYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLP 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020  80 MAMPAYIIAYTYTGMLDFAGpvqmalrdWFGwqygdYWFPQIR------SLNGAVAMLTlVLYPYVYLLSRAAFLNQSIC 153
Cdd:CHL00187  101 FALPTSVAGLTLATVYGDNG--------WIG-----HLLSHLGiqivftKLGVLLAMIF-VSFPFVVRTIQPVLQEIEKE 166

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 2535556020 154 VLDVSRTLGNGPWKTFWRVALPLARPAIIAGLSLALMETLADYGTV 199
Cdd:CHL00187  167 LEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSI 212
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 27-183 9.22e-07

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 50.48  E-value: 9.22e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020  27 LSTTVLPDYIRNSLLLMLGVAIGTLLIGVTTAWLTTMCQFPGRSVFEWALLLPMAMPAYIIAYtytgmldfagPVQMALR 106
Cdd:COG0395    67 FTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLI----------PLYLLFR 136

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2535556020 107 DwFGWqYGDYWfpqirslnGAVAMLTLVLYPYVYLLSRAAFLNQSICVLDVSRTLGNGPWKTFWRVALPLARPAIIA 183
Cdd:COG0395   137 Q-LGL-LNTYW--------GLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALAT 203
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 27-218 7.09e-05

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 44.76  E-value: 7.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020  27 LSTTVLPDYIRNSLLLMLGVAIGTLLIGVTTAWLTTMCQFPGRSVFEWALLL----P--MAMPAYIIAYTYTGMLDfagp 100
Cdd:COG3833    66 FTETPFLRWFLNSLIVAVVTAIISVFLAALAAYAFSRFRFKGRKAGLLALLLlqmfPafLALVALYLLLSALGLLN---- 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 101 vqmalrdwfgwqygDYWFPQIRSLNGAVAMLTLVLYPYVYLLSRAaflnqsicvLDVSRTL-GNGPWKTFWRVALPLARP 179
Cdd:COG3833   142 --------------TLLGLILVYLGGAIPFNTWLMKGYFDTIPKE---------LDEAAKIdGASHFQIFFRIILPLAKP 198

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 2535556020 180 AIIAGLSLALMETLADYGTVQFF-----------GVSTFTTGIFRTWFGM 218
Cdd:COG3833   199 ILAVVALLSFIGPWNDFILASVLlrspenytlavGLYSFVSDQRNTNWGV 248
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 126-240 1.41e-04

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 42.67  E-value: 1.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 126 GAVAMLTLVLYPYVYLLSRAAFLNQSICVLDVSRTLGNGPWKTFWRVALPLARPAIIAGLSLALMETLADYGTVQFFGVS 205
Cdd:pfam00528  54 PAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSW 133

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2535556020 206 T--FTTGIFRTWFGMGSAAAAAQLAAGLMVFVFALII 240
Cdd:pfam00528 134 PglGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLV 170
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
2-199 2.37e-04

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 43.20  E-value: 2.37e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020   2 AIILSMPVIVVLAHVFVPS-GDIWQHLSTTVLPDYIRNSLLLMLGVAIGTLLIGVTTAWLTTMCQFPGRSVFEWALLLPM 80
Cdd:PRK11602   31 AFILVVPMIYIFVQAFSKGlMPVLQNLADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPF 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020  81 AMPAYIIAYTYTGMLDFAGPVQmalrdwfGWqYGDYWFPQIRSLNGAVAMLTLVLYPYVYLLSRAAFLNQSICVLDVSRT 160
Cdd:PRK11602  111 AVSPVVAGLVYLLFYGSNGPLG-------GW-LDEHNLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAIL 182

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2535556020 161 LGNGPWKTFWRVALPLARPAIIAGLSLALMETLADYGTV 199
Cdd:PRK11602  183 LGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAV 221
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 390-477 5.14e-04

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 41.61  E-value: 5.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 390 STGLLLSGTLVAvtFAYLTRFLAVSLQTVDSGLtrithsmDEAGRSFGFRPLQILRQIHIPMLSASLMTALLLVFVDVLK 469
Cdd:TIGR01581 103 TLGVVLAQTFVA--SPYYVRVARSTFKSVDPRY-------EDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWARALG 173


                  ....*...
gi 2535556020 470 ELPATLIL 477
Cdd:TIGR01581 174 EFGATLMF 181
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 38-209 2.23e-03

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 40.59  E-value: 2.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020  38 NSLLLMLGVAIGTLLIGVTTAWLTTMCQFPGR----SVFEWALLLPMAMPAYIIAytyTG----MLDFAGPVQMAlrdwf 109
Cdd:PRK09433  323 TSLRIALAAALLAVVLTMMLLWSSRELRLRQRklaaQALELSGMLILAMPGIVLA---TGlfllLRNTTDLPASA----- 394

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 110 gwqygdywFPQIRSLNGAVAMltlvlyPYVYLLSRAAFLNQSICVLDVSRTLGNGPWKTFWRVALPLARPAIIAGLSLAL 189
Cdd:PRK09433  395 --------LGIVILTNALMAL------PYALRVLEPPMRDIAARYGRLCQSLGIRGWSRLRLIELRALRRPLAQAFAFAC 460

                         170       180
                  ....*....|....*....|
gi 2535556020 190 METLADYGTVQFFGVSTFTT 209
Cdd:PRK09433  461 ALSLGDFGVIALFGSQDFRT 480
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 126-189 3.17e-03

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 39.36  E-value: 3.17e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2535556020 126 GAVAMLTLVLYPYVYLLSRAAFLNQSICVLDVSRTLGNGPWKTFWRVALPLARPAIIAGLSLAL 189
Cdd:COG0600   127 SKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIAL 190
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 3-210 4.19e-03

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 39.20  E-value: 4.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020   3 IILSMPVIVVLAHVFVPS--GDIWQHLST---------TVLPDYIRNSLLLMLGVAIGTLLIGVTTAWLTTMCQFPGRSV 71
Cdd:PRK09500   15 AYLYIPIIILIVNSFNSSrfGINWKGFTTkwyellfnnDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKF 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020  72 FEWALLLPMAMPAYIIAYTYtgmldfagpvqMALRDWFGWQYGdYWfpqirSLngAVAMLTLVLyPYVYLLSRAAFLNQS 151
Cdd:PRK09500   95 VSGMLFVVMMSPDIVMAISL-----------LVLFMLLGIQLG-FW-----SL--LFAHITFCL-PFVVVTVYSRLKGFD 154

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2535556020 152 ICVLDVSRTLGNGPWKTFWRVALPLARPAIIAGLSLALMETLADygtvqfFGVSTFTTG 210
Cdd:PRK09500  155 VRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDD------VVVSSFVTG 207
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 42-209 4.54e-03

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 39.85  E-value: 4.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020  42 LMLGVAIGTLLIGVTTAWL--TTMCQFPGRSVFEWALLLPMAMPayiiaytytgmldfagpvQMALrdWFGWQYGDYWFP 119
Cdd:COG4135   362 LLLALASALIALVLVLACLeaEARRGRRPGRRALWLLYLPLLVP------------------QIAF--LFGLQVLLLRLG 421

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2535556020 120 QIRSLNGAVAMLTLVLYPYVYLLSRAAFLNQSICVLDVSRTLGNGPWKTFWRVALPLARPAIIAGLSLALMETLADYGTV 199
Cdd:COG4135   422 LDGTWLAVIWAHLVFVLPYVFLSLAGPWRALDPRYAQVAASLGASPWRVFWRVKLPLLLRPILTAAAVGFAVSVAQYLPT 501

                         170
                  ....*....|...
gi 2535556020 200 QFFG---VSTFTT 209
Cdd:COG4135   502 LLIGagrVATLTT 514
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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