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Conserved domains on  [gi|2534149983|ref|WP_291060629|]
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gliding motility protein GldL [Empedobacter sp. UBA1863]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
GldL_gliding super family cl11907
gliding motility-associated protein GldL; This protein family, GldL, is named for the member ...
9-188 3.04e-35

gliding motility-associated protein GldL; This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile [Cellular processes, Chemotaxis and motility]


The actual alignment was detected with superfamily member TIGR03513:

Pssm-ID: 274622  Cd Length: 202  Bit Score: 122.69  E-value: 3.04e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534149983   9 ERLTNFLYNFFAAVVIIGALCKITHTNIGpisaNLILTVGLVAEAIVFLYSAFfDKPEGSYEWEKAYPELL*K------- 81
Cdd:TIGR03513   1 KRVMNIVYGWGAAVVILGALFKIMHWPMG----NPMLFVGLITEALIFAISAF-EKPADEYDWERVYPELASKnprkraa 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534149983  82 ---------------------------EVFERLRGSLDKFGSAVNELNTTTSAVASTEQYSNEIAKASTNISQLNAVYAE 134
Cdd:TIGR03513  76 ayaeepsavgllsqkldamlkeakkdaTLMQSLGNGINPFEGAAKTLAPMTDSYAQQQKYIEQMSSLAANMEGLNTIYEA 155
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2534149983 135 QIVNSQKQVELNKQFIEEmqkssgsSEQFLKEMQELSANINALNKVYGGMLSAM 188
Cdd:TIGR03513 156 QLKGASSHADANNEIAIN-------SSSLKEEMEKMAANLTSLNEVYGGMLTAM 202
 
Name Accession Description Interval E-value
GldL_gliding TIGR03513
gliding motility-associated protein GldL; This protein family, GldL, is named for the member ...
9-188 3.04e-35

gliding motility-associated protein GldL; This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274622  Cd Length: 202  Bit Score: 122.69  E-value: 3.04e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534149983   9 ERLTNFLYNFFAAVVIIGALCKITHTNIGpisaNLILTVGLVAEAIVFLYSAFfDKPEGSYEWEKAYPELL*K------- 81
Cdd:TIGR03513   1 KRVMNIVYGWGAAVVILGALFKIMHWPMG----NPMLFVGLITEALIFAISAF-EKPADEYDWERVYPELASKnprkraa 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534149983  82 ---------------------------EVFERLRGSLDKFGSAVNELNTTTSAVASTEQYSNEIAKASTNISQLNAVYAE 134
Cdd:TIGR03513  76 ayaeepsavgllsqkldamlkeakkdaTLMQSLGNGINPFEGAAKTLAPMTDSYAQQQKYIEQMSSLAANMEGLNTIYEA 155
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2534149983 135 QIVNSQKQVELNKQFIEEmqkssgsSEQFLKEMQELSANINALNKVYGGMLSAM 188
Cdd:TIGR03513 156 QLKGASSHADANNEIAIN-------SSSLKEEMEKMAANLTSLNEVYGGMLTAM 202
 
Name Accession Description Interval E-value
GldL_gliding TIGR03513
gliding motility-associated protein GldL; This protein family, GldL, is named for the member ...
9-188 3.04e-35

gliding motility-associated protein GldL; This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274622  Cd Length: 202  Bit Score: 122.69  E-value: 3.04e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534149983   9 ERLTNFLYNFFAAVVIIGALCKITHTNIGpisaNLILTVGLVAEAIVFLYSAFfDKPEGSYEWEKAYPELL*K------- 81
Cdd:TIGR03513   1 KRVMNIVYGWGAAVVILGALFKIMHWPMG----NPMLFVGLITEALIFAISAF-EKPADEYDWERVYPELASKnprkraa 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534149983  82 ---------------------------EVFERLRGSLDKFGSAVNELNTTTSAVASTEQYSNEIAKASTNISQLNAVYAE 134
Cdd:TIGR03513  76 ayaeepsavgllsqkldamlkeakkdaTLMQSLGNGINPFEGAAKTLAPMTDSYAQQQKYIEQMSSLAANMEGLNTIYEA 155
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2534149983 135 QIVNSQKQVELNKQFIEEmqkssgsSEQFLKEMQELSANINALNKVYGGMLSAM 188
Cdd:TIGR03513 156 QLKGASSHADANNEIAIN-------SSSLKEEMEKMAANLTSLNEVYGGMLTAM 202
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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