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Conserved domains on  [gi|2525499808|ref|WP_287304796|]
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transposase, partial [Mesorhizobium sp.]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Transposase_mut super family cl27632
Transposase, Mutator family;
1-53 5.93e-23

Transposase, Mutator family;


The actual alignment was detected with superfamily member pfam00872:

Pssm-ID: 474953  Cd Length: 380  Bit Score: 89.36  E-value: 5.93e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2525499808   1 RQHHKHLKSTNMLERLNEEIRRRTYVVRIFPNSQSCLRLVRALAVETNENWKE 53
Cdd:pfam00872 328 EQIWRRIWSTNPIERLNKEIRRRTRVVGIFPNEESALRLLGAVLMELHDEWKE 380
 
Name Accession Description Interval E-value
Transposase_mut pfam00872
Transposase, Mutator family;
1-53 5.93e-23

Transposase, Mutator family;


Pssm-ID: 307151  Cd Length: 380  Bit Score: 89.36  E-value: 5.93e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2525499808   1 RQHHKHLKSTNMLERLNEEIRRRTYVVRIFPNSQSCLRLVRALAVETNENWKE 53
Cdd:pfam00872 328 EQIWRRIWSTNPIERLNKEIRRRTRVVGIFPNEESALRLLGAVLMELHDEWKE 380
transpos_IS256 NF033543
IS256 family transposase; Members of this family belong to the branch of the IS256-like family ...
 1-65 2.29e-21

IS256 family transposase; Members of this family belong to the branch of the IS256-like family of transposases that includes the founding member. It excludes the IS1249 group.


Pssm-ID: 468074 [Multi-domain]  Cd Length: 406  Bit Score: 84.96  E-value: 2.29e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2525499808   1 RQHHKHLKSTNMLERLNEEIRRRTYVVRIFPNSQSCLRLVRALAVETNENWKEANRYINMDDLRE 65
Cdd:NF033543  329 PEHRRSIYTTNAIESLNAEIRRRTKVVGIFPNDESALRLLYALLLEAEKKWRRRRGYKQLLSLLA 393
IS285 COG3328
Transposase (or an inactivated derivative) [Mobilome: prophages, transposons];
1-65 7.78e-18

Transposase (or an inactivated derivative) [Mobilome: prophages, transposons];


Pssm-ID: 442557  Cd Length: 400  Bit Score: 75.23  E-value: 7.78e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2525499808   1 RQHHKHLKSTNMLERLNEEIRRRTYVVRIFPNSQSCLRLVRALAVETNENWKEA-NRYINMDDLRE 65
Cdd:COG3328   327 AEIRRHIYTTNPIERLNREIRRRTKVVGIFPNEEAALKLVYLALQEASKKWTMGiRRWKGMEALAQ 392
 
Name Accession Description Interval E-value
Transposase_mut pfam00872
Transposase, Mutator family;
1-53 5.93e-23

Transposase, Mutator family;


Pssm-ID: 307151  Cd Length: 380  Bit Score: 89.36  E-value: 5.93e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2525499808   1 RQHHKHLKSTNMLERLNEEIRRRTYVVRIFPNSQSCLRLVRALAVETNENWKE 53
Cdd:pfam00872 328 EQIWRRIWSTNPIERLNKEIRRRTRVVGIFPNEESALRLLGAVLMELHDEWKE 380
transpos_IS256 NF033543
IS256 family transposase; Members of this family belong to the branch of the IS256-like family ...
 1-65 2.29e-21

IS256 family transposase; Members of this family belong to the branch of the IS256-like family of transposases that includes the founding member. It excludes the IS1249 group.


Pssm-ID: 468074 [Multi-domain]  Cd Length: 406  Bit Score: 84.96  E-value: 2.29e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2525499808   1 RQHHKHLKSTNMLERLNEEIRRRTYVVRIFPNSQSCLRLVRALAVETNENWKEANRYINMDDLRE 65
Cdd:NF033543  329 PEHRRSIYTTNAIESLNAEIRRRTKVVGIFPNDESALRLLYALLLEAEKKWRRRRGYKQLLSLLA 393
IS285 COG3328
Transposase (or an inactivated derivative) [Mobilome: prophages, transposons];
1-65 7.78e-18

Transposase (or an inactivated derivative) [Mobilome: prophages, transposons];


Pssm-ID: 442557  Cd Length: 400  Bit Score: 75.23  E-value: 7.78e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2525499808   1 RQHHKHLKSTNMLERLNEEIRRRTYVVRIFPNSQSCLRLVRALAVETNENWKEA-NRYINMDDLRE 65
Cdd:COG3328   327 AEIRRHIYTTNPIERLNREIRRRTKVVGIFPNEEAALKLVYLALQEASKKWTMGiRRWKGMEALAQ 392
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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