|
Name |
Accession |
Description |
Interval |
E-value |
| DUF5107 |
pfam17128 |
Domain of unknown function (DUF5107); This family is found in range of different bacterial ... |
41-344 |
2.54e-68 |
|
Domain of unknown function (DUF5107); This family is found in range of different bacterial species. In many proteins it lies N-terminal to a TPR-repeat region at the C-terminus.
Pssm-ID: 407262 Cd Length: 300 Bit Score: 231.31 E-value: 2.54e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 41 VYPYGVIDTLTGKREMREYQAVWMENDFIRIMLLPELGGRIHRAYDKVQQRDFVYYNEVVKPALVGLLGPWISGGIEFNW 120
Cdd:pfam17128 6 VYPY*VFSGYSNKPVPKRWR*ISLENEYLKAIVLPDLGGKVISATEKSSGEEFLYRNDVIKFRRIGPRGPWTAGGIEVNF 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 121 PQHHRPTTFMPVDFTCQQGEHgEQTVWMGEVEPMRGLQVMTGFTLYPDRALIEITGKVFngNATPRH--FLWWANPAVKG 198
Cdd:pfam17128 86 PIGHSPTTASPVDYQIDHTAD-STTVTVGERDLHSGTQWRVEISLPKDKACLEQRVVWY--NPGPLRqpYYSWSNAALPC 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 199 GDDHQSVFPPDVTAVYDHGKRDVSAFPIAtgtyykvdySAGVDISRYKNVPVPTSYMAEKSDYDFVGAWHHGERGGLLHV 278
Cdd:pfam17128 163 ADDTQFDFPGGTKTEHSHHEGDIKEWPVG---------*TGLDRSFYKNNNVGGGKSAHGSRENAFGGYTPSLGSGFGHI 233
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2524270127 279 ADHHISPGKKQWTWGYGDFGVAWDRNLTDDNGPYIELMTGVFTDNQPDFTWLAPYEEKVFVQNFLP 344
Cdd:pfam17128 234 ADYSDTPGKKLWSWGRARDGKIWEDLLTDDDGQYVEIQAGPILNQSIKLELLRPGESKNHTEYWIP 299
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
479-655 |
4.62e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 79.77 E-value: 4.62e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 479 AEEYYQRALDVDPHDYRNNVALGTLALNRADWAQAERCAKSALQRahklnkNPRDGEASMLLAAALERQGKDDLAREHYY 558
Cdd:COG2956 95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL------GPENAHAYCELAELYLEQGDYDEAIEALE 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 559 KA-SWSGNCRDAaFWSLARIAMKRNDYADALEKVNLSLRFNGSNNLAMGLKALALAGLGRTTEALAYISQQLIEYPLSYT 637
Cdd:COG2956 169 KAlKLDPDCARA-LLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247
|
170
....*....|....*...
gi 2524270127 638 LHYARWAIRQDEAAKEAL 655
Cdd:COG2956 248 LLALADLLERKEGLEAAL 265
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
479-670 |
8.44e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 75.43 E-value: 8.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 479 AEEYYQRALDVDPHDYRNNVALGTLALNRADWAQAERCAKSALQRahklnkNPRDGEASMLLAAALERQGKDDLAREHYY 558
Cdd:COG0457 27 AIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL------DPDDAEALNNLGLALQALGRYEEALEDYD 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 559 KASwSGNCRDA-AFWSLARIAMKRNDYADALEKVNLSLRFNGSNNLAMGLKALALAGLGRTTEALAYISQQLIEYPLSYT 637
Cdd:COG0457 101 KAL-ELDPDDAeALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALL 179
|
170 180 190
....*....|....*....|....*....|...
gi 2524270127 638 LHYARWAIRQDEAAKEALIAITGRRGANACELA 670
Cdd:COG0457 180 AAALGEAALALAAAEVLLALLLALEQALRKKLA 212
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
463-686 |
5.39e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 73.61 E-value: 5.39e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 463 YFIGQHLEQYNHASRyAEEYYQRALDVDPHDYRNNVALGTLALNRADWAQAERCAKSALQRahklnkNPRDGEASMLLAA 542
Cdd:COG2956 12 YFKGLNYLLNGQPDK-AIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLER------DPDRAEALLELAQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 543 ALERQGKDDLAREHYYKASWSGNCRDAAFWSLARIAMKRNDYADALEKVNLSLRFNGSNNLAMGLKALALAGLGRTTEAL 622
Cdd:COG2956 85 DYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAI 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2524270127 623 AYISQQLIEYP--LSYTLHYARWAIRQD--EAAKEAL---IAITGRRGANACELAGWLVSCGQKEAARAVL 686
Cdd:COG2956 165 EALEKALKLDPdcARALLLLAELYLEQGdyEEAIAALeraLEQDPDYLPALPRLAELYEKLGDPEEALELL 235
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
741-958 |
1.73e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 68.99 E-value: 1.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 741 AFARYLLGCFWYSKRCYEEAVNCWQFTLEQEPNFAPAHRLLG-IYAWNKQHDaqKALKYLSQAVALEPKNARFLFEL--D 817
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGnLYRRRGEYD--RAIRIHQKLLERDPDRAEALLELaqD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 818 YLNKLMAAPAEARLQRLEASKEivfHRDDLTVELLSVWNSLGRYEAAAGVLRERVfhpwEGGEGKATGQYLLNQIHqale 897
Cdd:COG2956 86 YLKAGLLDRAEELLEKLLELDP---DDAEALRLLAEIYEQEGDWEKAIEVLERLL----KLGPENAHAYCELAELY---- 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2524270127 898 vIRRGELQNATVLLQQAL-HYPHNLgegrlpgqtdnDIWYLLGYCARQQGHHDEAQRYFTRA 958
Cdd:COG2956 155 -LEQGDYDEAIEALEKALkLDPDCA-----------RALLLLAELYLEQGDYEEAIAALERA 204
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
501-808 |
4.68e-11 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 65.32 E-value: 4.68e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 501 GTLALNRADWAQAERcaksALQRAHKLNKNPrdGEASMLLAAALERQGKDDLAREHYYKASWS-GNCRDAAFWSLARIAM 579
Cdd:COG3071 23 GLLALAEGRYARAEK----LLSKAAEHSEAP--LLAYLLAARAAQALGDYERRDEYLAQALELaPEAELAVLLTRAELLL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 580 KRNDYADALEKVNLSLRFNGSNNLAMGLKALALAGLGRTTEALAYISQ----------QLIEYPLSYTLHYARWAIRQDE 649
Cdd:COG3071 97 DQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPAlrkhkalsaeEAQALERRAYLGLLRQAARDAE 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 650 AAKEALIAITGRRGAN---ACELAGWLVSCGQKEAARAVL-TLLDSQ--ETLPMLWRASLSDDPQPFIALARdclhnrvr 723
Cdd:COG3071 177 ALKALWKALPRAERRDpelAAAYARALIALGDHDEAERLLrEALKRQwdPRLVRLYGRLQGGDPAKQLKRAE-------- 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 724 fpntldevQMLQTLSDCAFARYLLGCFWYSKRCYEEAVNCWQFTLEQEPNfAPAHRLLG-IYAwnKQHDAQKALKYLSQA 802
Cdd:COG3071 249 --------KWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELArLLE--QLGDPEEAAEHYRKA 317
|
....*.
gi 2524270127 803 VALEPK 808
Cdd:COG3071 318 LALALG 323
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
470-596 |
8.16e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 63.98 E-value: 8.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 470 EQYNHASRY--AEEYYQRALDVDPHDYRNNVALGTLALNRADWAQAERCAKSALQRahklnkNPRDGEASMLLAAALERQ 547
Cdd:COG2956 152 ELYLEQGDYdeAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQ------DPDYLPALPRLAELYEKL 225
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 2524270127 548 GKDDLAREHYYKAsWSGNCRDAAFWSLARIAMKRNDYADALEKVNLSLR 596
Cdd:COG2956 226 GDPEEALELLRKA-LELDPSDDLLLALADLLERKEGLEAALALLERQLR 273
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
487-716 |
3.69e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 61.56 E-value: 3.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 487 LDVDPHDYRNNVALGTLALNRADWAQAERCAKSALQRahklnkNPRDGEASMLLAAALERQGKDDLAREHYYKASwSGNC 566
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL------DPDDAEALYNLGLAYLRLGRYEEALADYEQAL-ELDP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 567 RDAAFW-SLARIAMKRNDYADALEKVNLSLRFNGSNNLAMGLKALALAGLGRTTEALAYISQQLIEYPLSYTLHYARWAI 645
Cdd:COG0457 74 DDAEALnNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIA 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2524270127 646 RQDEAAKEALIAITGRRGANACELAGWLVSCGQKEAARAVLTLLDSQETLPMLWRASLSDDPQPFIALARD 716
Cdd:COG0457 154 LEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
430-641 |
6.04e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 63.47 E-value: 6.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 430 LLAYEEHIAEDLPLPKAACAPELPEALSCTDELYFIG-QHLEQYNHASRY--AEEYYQRALDVDPHDYRNNVALGTLALN 506
Cdd:COG3914 45 LLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLeLAALLLQALGRYeeALALYRRALALNPDNAEALFNLGNLLLA 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 507 RADWAQAERCAKSALQRahklnkNPRDGEASMLLAAALERQGKDDLAREHYYKASwSGNCRDAAFWS-LARIAMKRNDYA 585
Cdd:COG3914 125 LGRLEEALAALRRALAL------NPDFAEAYLNLGEALRRLGRLEEAIAALRRAL-ELDPDNAEALNnLGNALQDLGRLE 197
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2524270127 586 DALEKVNLSLRFNGSNNLAMGLKALALAGLG------RTTEALAYISQQLIEYPLSYTLHYA 641
Cdd:COG3914 198 EAIAAYRRALELDPDNADAHSNLLFALRQACdwevydRFEELLAALARGPSELSPFALLYLP 259
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
595-813 |
1.43e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 61.93 E-value: 1.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 595 LRFNGSNNLAMGLKALALAGLGRTTEALAYISQQLIEYPLSYTLHYARWAIRQDEAAKEALIAITGRRGANACELAGWLV 674
Cdd:COG3914 10 AALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQ 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 675 SCGQKEAARAvltlldsqetlpmLWRASLSDDPQPFIALAR--DCLHNRVRFPNTLDEVQM-LQTLSDCAFARYLLGCFW 751
Cdd:COG3914 90 ALGRYEEALA-------------LYRRALALNPDNAEALFNlgNLLLALGRLEEALAALRRaLALNPDFAEAYLNLGEAL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2524270127 752 YSKRCYEEAVNCWQFTLEQEPNFAPAHRLLGIyAWNKQHDAQKALKYLSQAVALEPKNARFL 813
Cdd:COG3914 157 RRLGRLEEAIAALRRALELDPDNAEALNNLGN-ALQDLGRLEEAIAAYRRALELDPDNADAH 217
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
479-560 |
2.57e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 55.18 E-value: 2.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 479 AEEYYQRALDVDPHDYRNNVALGTLALNRADWAQAErcaksALQRAHKLnkNPRDGEASMLLAAALERQGKDDLAREHYY 558
Cdd:COG3063 11 AEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-----ALEKALKL--DPNNAEALLNLAELLLELGDYDEALAYLE 83
|
..
gi 2524270127 559 KA 560
Cdd:COG3063 84 RA 85
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
430-627 |
4.59e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 60.39 E-value: 4.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 430 LLAYEEHIAEDLPLPKAACAPELPEALSCTDELYFIGQHLEQYNHASRYAEEYYQRALDVDPHDYRNNVALGTLALNRAD 509
Cdd:COG3914 6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 510 WAQAE--RCAKSALQRAHKLNKNPRDGEASMLLAAALERQGKDDLAREHYYKASWSGNCRDAAFWSLARIAMKRNDYADA 587
Cdd:COG3914 86 LLLQAlgRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEA 165
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2524270127 588 LEKVNLSLRFNGSNNLAMGLKALALAGLGRTTEALAYISQ 627
Cdd:COG3914 166 IAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRR 205
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
457-601 |
1.76e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.43 E-value: 1.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 457 SCTDELYFIGQHLEQYNHASRyAEEYYQRALDVDPHDYRNNVALGTLALNRADWAQAERCAKSALQRahklnkNPRDGEA 536
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDE-AEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL------DPDEPEA 74
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2524270127 537 SMLLAAALERQGKDDLAREHYYKASwSGNCRDAAFWS-LARIAMKRNDYADALEKVNLSLRFNGSN 601
Cdd:COG4783 75 RLNLGLALLKAGDYDEALALLEKAL-KLDPEHPEAYLrLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
481-635 |
2.16e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 54.58 E-value: 2.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 481 EYYQRALDVDPHDYRNNVALGTLALNRADWAQAERCAKSALQRAHKLNKNPRDGEASMLLAAALERQGKDDLAREHYYKA 560
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2524270127 561 SWSGNCRDAAFWSLARIAMKRNDYADALEKVNLSLRFNGSNNLAMGLKALALAGLGRTTEALAYISQQLIEYPLS 635
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPLK 155
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
449-560 |
6.14e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.89 E-value: 6.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 449 APELPEALSCTDELYFIGQHLEQynhasryAEEYYQRALDVDPHDYRNNVALGTLALNRADWAQAERcaksALQRAHKLn 528
Cdd:COG4783 34 DPDNPEAFALLGEILLQLGDLDE-------AIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALA----LLEKALKL- 101
|
90 100 110
....*....|....*....|....*....|..
gi 2524270127 529 kNPRDGEASMLLAAALERQGKDDLAREHYYKA 560
Cdd:COG4783 102 -DPEHPEAYLRLARAYRALGRPDEAIAALEKA 132
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
732-967 |
8.29e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 54.74 E-value: 8.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 732 QMLQTLSDCAFARYLLGCFWYSKRCYEEAVNCWQFTLEQEPNFAPAHRLLG-IYAWNKQHDaqKALKYLSQAVALEPKNA 810
Cdd:COG2956 33 EALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAqDYLKAGLLD--RAEELLEKLLELDPDDA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 811 RFLFEL--DYLNKLMAAPAEARLQRLEASKEIVFHrddLTVELLSVWNSLGRYEAAAGVLRERV-FHPweggeGKATGQY 887
Cdd:COG2956 111 EALRLLaeIYEQEGDWEKAIEVLERLLKLGPENAH---AYCELAELYLEQGDYDEAIEALEKALkLDP-----DCARALL 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 888 LLNQIHqalevIRRGELQNATVLLQQAL-HYPHNLgegrlpgqtdnDIWYLLGYCARQQGHHDEAQRYFTRATRGGSSLD 966
Cdd:COG2956 183 LLAELY-----LEQGDYEEAIAALERALeQDPDYL-----------PALPRLAELYEKLGDPEEALELLRKALELDPSDD 246
|
.
gi 2524270127 967 A 967
Cdd:COG2956 247 L 247
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
526-629 |
8.86e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.93 E-value: 8.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 526 KLNKNPRDGEASMLLAAALERQGKDDLAREHYYKAsWSGNCRDAAFWS-LARIAMKRNDYADALEKVNLSLRFNGSNNLA 604
Cdd:COG4235 9 ALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKA-LRLDPDNADALLdLAEALLAAGDTEEAEELLERALALDPDNPEA 87
|
90 100
....*....|....*....|....*
gi 2524270127 605 MGLKALALAGLGRTTEALAYISQQL 629
Cdd:COG4235 88 LYLLGLAAFQQGDYAEAIAAWQKLL 112
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
486-837 |
1.40e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 55.86 E-value: 1.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 486 ALDVDPHDYRNNVALGTLALNRADWAQAERcaksALQRAHKLNKNPRDgeASMLLAAALERQGKDDLAREHYYKASWSGN 565
Cdd:TIGR02917 48 ALQKDPNDAEARFLLGKIYLALGDYAAAEK----ELRKALSLGYPKNQ--VLPLLARAYLLQGKFQQVLDELPGKTLLDD 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 566 CRDAAFWSLARIAMKRN-DYADALEKVNLSLRFNGSNNLA-MGLKALALAGlGRTTEALAYISQQLIEYP-------LSY 636
Cdd:TIGR02917 122 EGAAELLALRGLAYLGLgQLELAQKSYEQALAIDPRSLYAkLGLAQLALAE-NRFDEARALIDEVLTADPgnvdallLKG 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 637 TLHYARWAIRQDEAAKEALIAITGRRGANACELAGWLVSCGQKEAARAVLTLLdsqetlpmlwraslsddpqpfialard 716
Cdd:TIGR02917 201 DLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADAL--------------------------- 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 717 clhnRVRFPNTLdevqmlqtlsdcaFARYLLGCFWYSKRCYEEAVNCWQFTLEQEPNFAPAHRLLGIYAWnKQHDAQKAL 796
Cdd:TIGR02917 254 ----LKKAPNSP-------------LAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEY-QLGNLEQAY 315
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 2524270127 797 KYLSQAVALEPKN--ARFLFELDYLNKLMAAPAEARLQRLEAS 837
Cdd:TIGR02917 316 QYLNQILKYAPNShqARRLLASIQLRLGRVDEAIATLSPALGL 358
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
430-557 |
1.58e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.16 E-value: 1.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 430 LLAYEEHIAEDlplpkaacaPELPEALsctdelYFIGQHLEQYNHASRyAEEYYQRALDVDPHDYRNNVALGTLALNRAD 509
Cdd:COG4235 3 IARLRQALAAN---------PNDAEGW------LLLGRAYLRLGRYDE-ALAAYEKALRLDPDNADALLDLAEALLAAGD 66
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2524270127 510 WAQAERcaksALQRAHKLnkNPRDGEASMLLAAALERQGKDDLAREHY 557
Cdd:COG4235 67 TEEAEE----LLERALAL--DPDNPEALYLLGLAAFQQGDYAEAIAAW 108
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
479-830 |
1.70e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 55.47 E-value: 1.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 479 AEEYYQRALDVDPHDYRNNVALGTLALNRADWAQA----ERCAKS---------ALQRAHKLNKNPRDG----------- 534
Cdd:TIGR02917 518 AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAvawlEKAAELnpqeiepalALAQYYLGKGQLKKAlailneaadaa 597
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 535 ----EASMLLAAALERQGKDDLAREHYYKASWSGNCRDAAFWSLARIAMKRNDYADALEKVNLSLRFNGSNNLAMGLKAL 610
Cdd:TIGR02917 598 pdspEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQ 677
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 611 ALAGLGRTTEAL---AYISQQLIEYPLSYTLHyARWAIRQdEAAKEALIAITGR-----RGANACELAGWLVSCGQKEAA 682
Cdd:TIGR02917 678 LLLAAKRTESAKkiaKSLQKQHPKAALGFELE-GDLYLRQ-KDYPAAIQAYRKAlkrapSSQNAIKLHRALLASGNTAEA 755
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 683 RAVLTlldsqetlpmlwrASLSDDPqpfialardclhnrvrfpntldevqmlqtlsDCAFARYLLGCFWYSKRCYEEAVN 762
Cdd:TIGR02917 756 VKTLE-------------AWLKTHP-------------------------------NDAVLRTALAELYLAQKDYDKAIK 791
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2524270127 763 CWQFTLEQEPNFAPAHRLLgiyAW-NKQHDAQKALKYLSQAVALEPKNARFlfeLDYLNKLMAAPAEAR 830
Cdd:TIGR02917 792 HYQTVVKKAPDNAVVLNNL---AWlYLELKDPRALEYAERALKLAPNIPAI---LDTLGWLLVEKGEAD 854
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
739-958 |
1.80e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 53.47 E-value: 1.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 739 DCAFARYLLGCFWYSKRCYEEAVNCWQFTLEQEPNFAPAHRLLGIyAWNKQHDAQKALKYLSQAVALEPKNARFLFELDY 818
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGL-AYLRLGRYEEALADYEQALELDPDDAEALNNLGL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 819 LNKLMAAPAEArLQRLEASKEIVFHRDDLTVELLSVWNSLGRYEAAAGVLRERV---FHPWEGGEGKATGQYLLNQIHQA 895
Cdd:COG0457 85 ALQALGRYEEA-LEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALeldPDDADALYNLGIALEKLGRYEEA 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2524270127 896 LEVIRRGELQNATVLLQQALHYPHNLGEGRLPGQTDNDIWYLLGYCARQQGHHDEAQRYFTRA 958
Cdd:COG0457 164 LELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLA 226
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
479-610 |
3.46e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.39 E-value: 3.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 479 AEEYYQRALDVDPHDYRNNVALGTLALNRADWAQAERcaksALQRAHKLnkNPRDGEASMLLAAALERQGKDDLAREHYY 558
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALA----AYEKALRL--DPDNADALLDLAEALLAAGDTEEAEELLE 75
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2524270127 559 KA--SWSGNcrDAAFWSLARIAMKRNDYADALEKVNLSLRFNGSNNLAMGLKAL 610
Cdd:COG4235 76 RAlaLDPDN--PEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
450-837 |
3.66e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 54.32 E-value: 3.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 450 PELPEALsctdelYFIGQ-HLEQYNHASryAEEYYQRALDVDPHDyrnnvALGTLALNRADWAQAErcAKSALQRAHKLN 528
Cdd:TIGR02917 53 PNDAEAR------FLLGKiYLALGDYAA--AEKELRKALSLGYPK-----NQVLPLLARAYLLQGK--FQQVLDELPGKT 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 529 KNPRDGEASMLLAAALE--RQGKDDLAREHYYKASWSGNCRDAAFWSLARIAMKRNDYADALEKVNLSLRFNGSNNLAMG 606
Cdd:TIGR02917 118 LLDDEGAAELLALRGLAylGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 607 LKALALAGLGRTTEALAYISQQLIEYPLSYTLHYARWAI-----RQDEAAK--EALIAITgrRGANACELAGWLVSCGQK 679
Cdd:TIGR02917 198 LKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATIlieagEFEEAEKhaDALLKKA--PNSPLAHYLKALVDFQKK 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 680 EAARAVLTLLDS----QETLPMLWRASLSDDPQPFIALARDCLhNRV--RFPNTLDEVQMLQTL---------------- 737
Cdd:TIGR02917 276 NYEDARETLQDAlksaPEYLPALLLAGASEYQLGNLEQAYQYL-NQIlkYAPNSHQARRLLASIqlrlgrvdeaiatlsp 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 738 -----SDCAFARYLLGCFWYSKRCYEEAVNCWQFTLEQEPNFAPAHRLLGIYAWNkQHDAQKALKYLSQAVALEPK--NA 810
Cdd:TIGR02917 355 algldPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLS-QGDPSEAIADLETAAQLDPElgRA 433
|
410 420
....*....|....*....|....*..
gi 2524270127 811 RFLFELDYLNKLMAAPAEARLQRLEAS 837
Cdd:TIGR02917 434 DLLLILSYLRSGQFDKALAAAKKLEKK 460
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
757-958 |
3.70e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 52.81 E-value: 3.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 757 YEEAVNCWQFTLEQEPNFAPAHRLLG-IYAwnKQHDAQKALKYLSQAVALEPKNARFLFEL--DYLNKLMAAPAEARLQR 833
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAeIYE--QEGDWEKAIEVLERLLKLGPENAHAYCELaeLYLEQGDYDEAIEALEK 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 834 -LEASKEIVfhrdDLTVELLSVWNSLGRYEAAAGVLRERVfhpwEGGEGKATGQYLLNQIHQALevirrGELQNATVLLQ 912
Cdd:COG2956 170 aLKLDPDCA----RALLLLAELYLEQGDYEEAIAALERAL----EQDPDYLPALPRLAELYEKL-----GDPEEALELLR 236
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2524270127 913 QALHYphnlgegrlpgQTDNDIWYLLGYCARQQGHHDEAQRYFTRA 958
Cdd:COG2956 237 KALEL-----------DPSDDLLLALADLLERKEGLEAALALLERQ 271
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
499-633 |
6.43e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 49.81 E-value: 6.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 499 ALGTLALNRADWAQAERcaksALQRAhkLNKNPRDGEASMLLAAALERQGKDDLAREHYYKASWSGNCRDAAFWSLARIA 578
Cdd:COG4783 9 ALAQALLLAGDYDEAEA----LLEKA--LELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2524270127 579 MKRNDYADALEKVNLSLRFNGSNNLAMGLKALALAGLGRTTEALAYISQQLIEYP 633
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
479-809 |
8.13e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 53.55 E-value: 8.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 479 AEEYYQRALDVDPHDYRNNVALGTLALNRADwaqaERCAKSALQRAHKLNKNPRDGEASMLLA-----------AALER- 546
Cdd:TIGR02917 382 AAEYLAKATELDPENAAARTQLGISKLSQGD----PSEAIADLETAAQLDPELGRADLLLILSylrsgqfdkalAAAKKl 457
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 547 ------------------QGKDDLAR-EHYYKASWSGNCRDA-AFWSLARIAMKRNDYADALEKVNLSLRFNGSNNLAMg 606
Cdd:TIGR02917 458 ekkqpdnaslhnllgaiyLGKGDLAKaREAFEKALSIEPDFFpAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI- 536
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 607 lkaLALAGL----GRTTEALAYISQqlieyplsytlhyarwAIRQDEAAKEALIAitgrrganaceLAGWLVscGQKEAA 682
Cdd:TIGR02917 537 ---LALAGLylrtGNEEEAVAWLEK----------------AAELNPQEIEPALA-----------LAQYYL--GKGQLK 584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 683 RAVLTLLDSQETLPmlwraslsDDPQPFIALARDCLHNrvrfpntldevqmlqtlSDcafaryllgcfwyskrcYEEAVN 762
Cdd:TIGR02917 585 KALAILNEAADAAP--------DSPEAWLMLGRAQLAA-----------------GD-----------------LNKAVS 622
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 2524270127 763 CWQFTLEQEPNFAPAHRLLgIYAWNKQHDAQKALKYLSQAVALEPKN 809
Cdd:TIGR02917 623 SFKKLLALQPDSALALLLL-ADAYAVMKNYAKAITSLKRALELKPDN 668
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
739-912 |
8.49e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 51.55 E-value: 8.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 739 DCAFARYLLGCFWYSKRCYEEAVNCWQFTLEQEPNFAPAHRLLGiYAWNKQHDAQKALKYLSQAVALEPKNARFLFELDY 818
Cdd:COG0457 74 DDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLG-LALLELGRYDEAIEAYERALELDPDDADALYNLGI 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 819 LNKLMAAPAEArLQRLEASKEIVFHRDDLTVELLSVWNSLGRYEAAAGVLRERVFHPWEGGEGKATGQYLLNQIHQALEV 898
Cdd:COG0457 153 ALEKLGRYEEA-LELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLL 231
|
170
....*....|....
gi 2524270127 899 IRRGELQNATVLLQ 912
Cdd:COG0457 232 ALRLAALALYQYRA 245
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
479-560 |
1.57e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.19 E-value: 1.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 479 AEEYYQRALDVDPHDYRNNVALGTLALNRADWAQAERCAKSALQRahklnkNPRDGEASMLLAAALERQGKDDLAREHYY 558
Cdd:COG5010 73 SLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL------SPDNPNAYSNLAALLLSLGQDDEAKAALQ 146
|
..
gi 2524270127 559 KA 560
Cdd:COG5010 147 RA 148
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
470-926 |
2.00e-06 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 52.17 E-value: 2.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 470 EQYNHASRYAE--EYYQRAldvdphdyrnnvalGTLALNRADWAQAERCAKSALQRAHKLNKNPRDGEASMLLAAALERQ 547
Cdd:COG3899 693 HHLNRAGERDRaaRLLLRA--------------ARRALARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLA 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 548 GKDDLAREHY-----------YKASWSGNCRDAAFWSLARIAMKRNDYADALEKVNLSLRFNGSNNL------AMGLKAL 610
Cdd:COG3899 759 GRFEEAEALLeralaaralaaLAALRHGNPPASARAYANLGLLLLGDYEEAYEFGELALALAERLGDrrlearALFNLGF 838
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 611 ALAGLGRTTEALAYIsQQLIEYPLSYTLHYARWAIRQDEAAKEALIAITGRRGANACELAGWLVSCGQKEAARAVLTLLD 690
Cdd:COG3899 839 ILHWLGPLREALELL-REALEAGLETGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAE 917
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 691 SQETLPMLWRASLSDDPQPFIALARDCLHNRVRFPNTLDEVQMLQTLSDCAFARYLLGCFWYSKRCYEEAVNCWQFTLEQ 770
Cdd:COG3899 918 LARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAAAA 997
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 771 EPNFAPAHRLLGIYAWNKQ-HDAQKALKYLSQAVALEPKNARFLFELDYLNKLMAAPAEARLQRLEASKEIVFHRDDLTV 849
Cdd:COG3899 998 LLALLAAAAAAAAAAAALAaALLAAALAALAAAAAAAALLAAAAALALLAALAAAAAAAAAAAALAAAAALLAAAAAAAA 1077
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2524270127 850 ELLSVWNSLGRYEAAAGVLRERVFHPWEGGEGKATGQYLLNQIHQALEVIRRGELQNATVLLQQALHYPHNLGEGRL 926
Cdd:COG3899 1078 AAAAAAAAAALAAALAAAALAAAAAAALALAAALAALALAAALAALALAAAARAAAALLLLAAALALALAALLLLAA 1154
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
472-632 |
2.81e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 50.01 E-value: 2.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 472 YNHASRY--AEEYYQRALDVDPHDYRNNVALGTLALNRADWAQAERCAKSALQrahklnKNPRDGEASMLLAAALERQGK 549
Cdd:COG0457 86 LQALGRYeeALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALE------LDPDDADALYNLGIALEKLGR 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 550 DDLAREHYYKASWSGncRDAAFWSLARIAMKRNDYADALEKVNLSLRFNGSNNLAMGLKALALAGLGRTTEALAYISQQL 629
Cdd:COG0457 160 YEEALELLEKLEAAA--LAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAA 237
|
...
gi 2524270127 630 IEY 632
Cdd:COG0457 238 LAL 240
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
438-1082 |
2.86e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 51.62 E-value: 2.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 438 AEDLPLPKAACAPELPEALSCTDEL-----YFIGQHLEQYNHASRY----------------AEEYYQRALDVDPHDYRN 496
Cdd:TIGR02917 82 ALSLGYPKNQVLPLLARAYLLQGKFqqvldELPGKTLLDDEGAAELlalrglaylglgqlelAQKSYEQALAIDPRSLYA 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 497 NVALGTLALNRADWAQAERCAKSALQ------RAHKLNK----------------------NPRDGEASMLLAAALERQG 548
Cdd:TIGR02917 162 KLGLAQLALAENRFDEARALIDEVLTadpgnvDALLLKGdlllslgnielalaayrkaialRPNNIAVLLALATILIEAG 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 549 KDDLAREHYYKASWSGNCRDAAFWSLARIAMKRNDYADALEKVNLSLRFNGSNnlamgLKALALAG-----LGRTTEALA 623
Cdd:TIGR02917 242 EFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEY-----LPALLLAGaseyqLGNLEQAYQ 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 624 YISQQLIEYPlsyTLHYARWAI--------RQDEAAKEALIAI-TGRRGANACELAGwlvscgqkeaaRAVLTLLDSQET 694
Cdd:TIGR02917 317 YLNQILKYAP---NSHQARRLLasiqlrlgRVDEAIATLSPALgLDPDDPAALSLLG-----------EAYLALGDFEKA 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 695 LPMLWRASLSDdpqPFIALARDCL------HNRVR--FPNTLDEVQMLQTLSDcafARYLLgCFWYSKRCYEEAVNCWQF 766
Cdd:TIGR02917 383 AEYLAKATELD---PENAAARTQLgisklsQGDPSeaIADLETAAQLDPELGR---ADLLL-ILSYLRSGQFDKALAAAK 455
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 767 TLE-QEPNFAPAHRLLGIYAWNKQhDAQKALKYLSQAVALEPKNARFLFELDYLNKLMAAPAEARlQRLEASKEIVFHRD 845
Cdd:TIGR02917 456 KLEkKQPDNASLHNLLGAIYLGKG-DLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI-QRFEKVLTIDPKNL 533
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 846 DLTVELLSVWNSLGRYEAAAGVLrERVF--HPWEGGEGKATGQYLL--NQIHQALEVIRrgELQNATVLLQQAlhyphnl 921
Cdd:TIGR02917 534 RAILALAGLYLRTGNEEEAVAWL-EKAAelNPQEIEPALALAQYYLgkGQLKKALAILN--EAADAAPDSPEA------- 603
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 922 gegrlpgqtdndiWYLLGYCARQQGHHDEAQRYFTRAtrggSSLDAgryynDQPVDYL----FWQGM------------A 985
Cdd:TIGR02917 604 -------------WLMLGRAQLAAGDLNKAVSSFKKL----LALQP-----DSALALLlladAYAVMknyakaitslkrA 661
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 986 LKASGDCTEANLLFQSFlqwvETQRDKVPDVDFFAVSLpdlvvldtpaQEKHQQHclfitALGHLGLGDI-------PAC 1058
Cdd:TIGR02917 662 LELKPDNTEAQIGLAQL----LLAAKRTESAKKIAKSL----------QKQHPKA-----ALGFELEGDLylrqkdyPAA 722
|
730 740
....*....|....*....|....
gi 2524270127 1059 QQALNALLQRNPTHDKAQLLRHAL 1082
Cdd:TIGR02917 723 IQAYRKALKRAPSSQNAIKLHRAL 746
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
484-560 |
3.57e-06 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 50.29 E-value: 3.57e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2524270127 484 QRALDVDPHDYRNNVALGTLALNRADWAQAErcakSALQRAHKLNKNPrdgEASMLLAAALERQGKDDLAREHYYKA 560
Cdd:COG3071 248 EKWLKKHPNDPDLLLALGRLCLRNQLWGKAR----EYLEAALALRPSA---EAYAELARLLEQLGDPEEAAEHYRKA 317
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
470-589 |
6.43e-06 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 48.72 E-value: 6.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 470 EQYNHASRY--AEEYYQRALDvdpHDYRNNVALgTLALNRADWAQ---AErcAKSALQRAHKLNKNPRDGEASMLLAAAL 544
Cdd:COG4700 97 DALLELGRYdeAIELYEEALT---GIFADDPHI-LLGLAQALFELgryAE--ALETLEKLIAKNPDFKSSDAHLLYARAL 170
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 2524270127 545 ERQGKDDLAREHYYKAS--WSGncRDAAFWsLARIAMKRNDYADALE 589
Cdd:COG4700 171 EALGDLEAAEAELEALArrYSG--PEARYR-YAKFLARQGRTAEAKE 214
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
503-600 |
2.86e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 43.62 E-value: 2.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 503 LALNRADWAQAERCAKSALQRahklnkNPRDGEASMLLAAALERQGKDDLAREhyYKASWSGNCRDA-AFWSLARIAMKR 581
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL------DPDNADALNNLGLLLLEQGRYDEAIA--LEKALKLDPNNAeALLNLAELLLEL 72
|
90
....*....|....*....
gi 2524270127 582 NDYADALEKVNLSLRFNGS 600
Cdd:COG3063 73 GDYDEALAYLERALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
757-830 |
7.42e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.18 E-value: 7.42e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2524270127 757 YEEAVNCWQFTLEQEPNFAPAHRLLGiYAWNKQHDAQKALKYLSQAVALEPKNARFLFELDYLNKLMAAPAEAR 830
Cdd:COG5010 70 FEESLALLEQALQLDPNNPELYYNLA-LLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAK 142
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
532-655 |
7.75e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 43.64 E-value: 7.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 532 RDGEASMLLAAALERQGKDDLAREHYYKASWSGNCRDAAFWSLARIAMKRNDYADALEKVNLSLRFNGSNNLAMGLKALA 611
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2524270127 612 LAGLGRTTEALAYISQQLIEYPLSYTLHY----ARWAIRQDEAAKEAL 655
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDPEHPEAYLrlarAYRALGRPDEAIAAL 129
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
538-658 |
1.11e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 44.87 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 538 MLLAAALERQGKDDLAREHyYKASWSGNCRD--AAFWSLARIAMKRNDYADALEKVNlSLR-----FNGSNnlAMGLKAL 610
Cdd:COG4700 93 VRLADALLELGRYDEAIEL-YEEALTGIFADdpHILLGLAQALFELGRYAEALETLE-KLIaknpdFKSSD--AHLLYAR 168
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2524270127 611 ALAGLGRTTEALAYIsQQLIEYPLSYT--LHYARWAIRQD--EAAKEALIAI 658
Cdd:COG4700 169 ALEALGDLEAAEAEL-EALARRYSGPEarYRYAKFLARQGrtAEAKELLEEI 219
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
732-836 |
1.34e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 43.26 E-value: 1.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 732 QMLQTLSDCAFARYLLG-CFWYSKRcYEEAVNCWQFTLEQEPNFAPAHRLLGiYAWNKQHDAQKALKYLSQAVALEPKNA 810
Cdd:COG4783 29 KALELDPDNPEAFALLGeILLQLGD-LDEAIVLLHEALELDPDEPEARLNLG-LALLKAGDYDEALALLEKALKLDPEHP 106
|
90 100
....*....|....*....|....*.
gi 2524270127 811 RFLFELDYLNKLMAAPAEARLQRLEA 836
Cdd:COG4783 107 EAYLRLARAYRALGRPDEAIAALEKA 132
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
543-636 |
2.57e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.92 E-value: 2.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 543 ALERQGKDDLAREHYYKASWSGNCRDAAFWSLARIAMKRNDYADALEkVNLSLRFNGSNNLAMGLKALALAGLGRTTEAL 622
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|....
gi 2524270127 623 AYISQQLIEYPLSY 636
Cdd:COG3063 80 AYLERALELDPSAL 93
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
757-830 |
3.72e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.54 E-value: 3.72e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2524270127 757 YEEAVNCWQFTLEQEPNFAPAHRLLGiYAWNKQHDAQKALKYlSQAVALEPKNARFLFELDYLNKLMAAPAEAR 830
Cdd:COG3063 8 LEEAEEYYEKALELDPDNADALNNLG-LLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
741-811 |
6.18e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.15 E-value: 6.18e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2524270127 741 AFARYLLGCFWYSKRCYEEAVNcWQFTLEQEPNFAPAHRLLGIYAWnKQHDAQKALKYLSQAVALEPKNAR 811
Cdd:COG3063 26 ADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLL-ELGDYDEALAYLERALELDPSALR 94
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
732-836 |
7.81e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 40.76 E-value: 7.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 732 QMLQTLSDCAFARYLLGCFWYSKRCYEEAVNCWQFTLEQEPNFAPAHRLLG-IYAwnKQHDAQKALKYLSQAVALEPKNA 810
Cdd:COG4235 8 QALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAeALL--AAGDTEEAEELLERALALDPDNP 85
|
90 100
....*....|....*....|....*...
gi 2524270127 811 RFLFELDYLNKLMAAPAEAR--LQRLEA 836
Cdd:COG4235 86 EALYLLGLAAFQQGDYAEAIaaWQKLLA 113
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
460-659 |
8.85e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 42.21 E-value: 8.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 460 DELYFIGQHLEQYNHASRYAEeyYQRALDVDPHDYRNNVALGTLALNRADWAQAERCAKSALQRAHKLNKNPRDGEASML 539
Cdd:COG4785 1 LYALALALLLALALAAAAASK--AAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 540 LAAALERQGKDDLAREHYYKASwSGNCRDAAFWS-LARIAMKRNDYADALEKVNLSLRFNGSNNLAMGLKALALAGLGRT 618
Cdd:COG4785 79 RGVAYDSLGDYDLAIADFDQAL-ELDPDLAEAYNnRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRY 157
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2524270127 619 TEALAYISQQLIEYPLSYTLHYARWAIRQDEAAKEALIAIT 659
Cdd:COG4785 158 ELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALLL 198
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
446-633 |
8.97e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 43.53 E-value: 8.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 446 AACAPELPEALSCTDELYfigqhLEQYNHASryAEEYYQRALDVDPHdyrNNVALGTLA---LNRADWAQAERCAKSALQ 522
Cdd:TIGR02917 594 ADAAPDSPEAWLMLGRAQ-----LAAGDLNK--AVSSFKKLLALQPD---SALALLLLAdayAVMKNYAKAITSLKRALE 663
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 523 RahklnkNPRDGEASMLLAAaLERQGKDDLAREHYYKASWSGNCRDAA-FWSLARIAMKRNDYADALEKVNLSLRFNGSN 601
Cdd:TIGR02917 664 L------KPDNTEAQIGLAQ-LLLAAKRTESAKKIAKSLQKQHPKAALgFELEGDLYLRQKDYPAAIQAYRKALKRAPSS 736
|
170 180 190
....*....|....*....|....*....|..
gi 2524270127 602 NLAMGLkALALAGLGRTTEALAYISQQLIEYP 633
Cdd:TIGR02917 737 QNAIKL-HRALLASGNTAEAVKTLEAWLKTHP 767
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
738-816 |
1.34e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 40.18 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 738 SDCAFARYLLGCFWYSKRCYEEAVNCWQFTLEQEPNFAPAHRLLG-IYAWNKQHDaqKALKYLSQAVALEPKNARFLFEL 816
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGeILLQLGDLD--EAIVLLHEALELDPDEPEARLNL 78
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
678-836 |
1.72e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 41.05 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 678 QKEAARAVLTLLDSQETLPMLWRASLSDDPQPFIA--LARDCLHNRVRFPNTLDEVQMLQTLsdcafarYLLGCFWYSKR 755
Cdd:COG4785 15 AAAAASKAAILLAALLFAAVLALAIALADLALALAaaALAAAALAAERIDRALALPDLAQLY-------YERGVAYDSLG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 756 CYEEAVNCWQFTLEQEPNFAPAHRLLGIYaWNKQHDAQKALKYLSQAVALEPKNARFLFELDYLNKLMAAPAEARLQRLE 835
Cdd:COG4785 88 DYDLAIADFDQALELDPDLAEAYNNRGLA-YLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEK 166
|
.
gi 2524270127 836 A 836
Cdd:COG4785 167 A 167
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
499-560 |
1.73e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.09 E-value: 1.73e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2524270127 499 ALGTLALNRADWAQAERCAKSALQRAhklNKNPRDGEASMLLAAALERQGKDDLAREHYYKA 560
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALARF---PESPDAAAALLLLGLAALRQGRLAEAAAAYRAA 60
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
759-830 |
2.14e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.22 E-value: 2.14e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2524270127 759 EAVNCWQFTLEQEPNFAPAHRLLG-IYAWNKQHDaqKALKYLSQAVALEPKNARFLFELDYLNKLMAAPAEAR 830
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGrAYLRLGRYD--EALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAE 71
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
474-686 |
2.30e-03 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 41.90 E-value: 2.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 474 HASRYAEEYYQRALDVDPHDYRNNVALGTLALNRADWAQAERCAKSALQRAHKLNKNPRDGEASMLLAAALERQGKDDLA 553
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 554 REHyykaswsgncrdaafwsLARIAMKRNDYADALEKVNLSLRFNGSNNLAMGLKALALAGLGRTTEALAYIsQQLIEYP 633
Cdd:COG3914 81 LEL-----------------AALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAAL-RRALALN 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2524270127 634 LSYTLHYARWAI------RQDEAAK--EALIAITGRRGANACELAGWLVSCGQKEAARAVL 686
Cdd:COG3914 143 PDFAEAYLNLGEalrrlgRLEEAIAalRRALELDPDNAEALNNLGNALQDLGRLEEAIAAY 203
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
479-694 |
2.56e-03 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 41.99 E-value: 2.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 479 AEEYYQRALDVDPhdyrNNVALgTLALNRADWAQAERC-AKSALQRAhkLNKNPRDGEASMLLAAALERQGKDDLAREHY 557
Cdd:PRK11447 480 AAELQRQRLALDP----GSVWL-TYRLAQDLRQAGQRSqADALMRRL--AQQKPNDPEQVYAYGLYLSGSDRDRAALAHL 552
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 558 Y---KASWSGNCRDaafwslariamkrndyadalekvnLSLRFNGSNNLAmglKALALAGLGRTTEALAYISQQLIEYPL 634
Cdd:PRK11447 553 NtlpRAQWNSNIQE------------------------LAQRLQSDQVLE---TANRLRDSGKEAEAEALLRQQPPSTRI 605
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2524270127 635 SYTLhyARWAIRQDE--AAKEALIAITGRRGANACELAGW---LVSCGQKEAARAVLTLLDSQET 694
Cdd:PRK11447 606 DLTL--ADWAQQRGDyaAARAAYQRVLTREPGNADARLGLievDIAQGDLAAARAQLAKLPATAN 668
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
933-1004 |
2.57e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.82 E-value: 2.57e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2524270127 933 DIWYLLGYCARQQGHHDEAQRYFTRATRggssldagRYYNDQPV-DYLFWQGMALKASGDCTEANLLFQSFLQ 1004
Cdd:COG1729 31 DALYWLGEAYYALGDYDEAAEAFEKLLK--------RYPDSPKApDALLKLGLSYLELGDYDKARATLEELIK 95
|
|
| TPR_hemY_coli |
TIGR00540 |
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized ... |
484-560 |
2.80e-03 |
|
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis. [Unknown function, General]
Pssm-ID: 273126 [Multi-domain] Cd Length: 367 Bit Score: 41.12 E-value: 2.80e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2524270127 484 QRALDVDPHDYRNNVALGTLALNRADWAQAERCAKSALqrahklnKNPRDGEASMLLAAALERQGKDDLAREHYYKA 560
Cdd:TIGR00540 298 EKWLKKHPDDALLLLALGRLCLRQQLWGKAQSYLEASL-------SLAPTEEAHLELAQLFEQLGDTEAAAQHYRKS 367
|
|
| Mgr3-like |
cd24145 |
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ... |
512-560 |
4.81e-03 |
|
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.
Pssm-ID: 467945 [Multi-domain] Cd Length: 307 Bit Score: 40.41 E-value: 4.81e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 2524270127 512 QAERCAKSALQRAHKLNKNPRDGEASMLLAAAL-------ERQGKDDLAREHYYKA 560
Cdd:cd24145 230 AALKWAQKALDVAKSIKPKDRDPECDQACALALynlgviaEMLGNLDEARKLYKEA 285
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
543-647 |
7.03e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.66 E-value: 7.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 543 ALERQGKDDLAREHYYKA----SWSGNCRDAAFWsLARIAMKRNDYADALEKVNLSLRFNGSNNL---AMGLKALALAGL 615
Cdd:COG1729 2 ALLKAGDYDEAIAAFKAFlkryPNSPLAPDALYW-LGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLEL 80
|
90 100 110
....*....|....*....|....*....|..
gi 2524270127 616 GRTTEALAYISQQLIEYPLSYTLHYARWAIRQ 647
Cdd:COG1729 81 GDYDKARATLEELIKKYPDSEAAKEARARLAR 112
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
449-546 |
1.00e-02 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 37.29 E-value: 1.00e-02
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2524270127 449 APELPEALSCTDELYFIGQHLEQynhasryAEEYYQRALDVDPHDYRNNVALGTLALNRADWAQAERcaksALQRAhkLN 528
Cdd:COG4235 47 DPDNADALLDLAEALLAAGDTEE-------AEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIA----AWQKL--LA 113
|
90
....*....|....*...
gi 2524270127 529 KNPRDGEAsMLLAAALER 546
Cdd:COG4235 114 LLPADAPA-RLLEASIAE 130
|
|
| |
