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Conserved domains on  [gi|2519193380|ref|WP_284882865|]
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MULTISPECIES: fimbria/pilus outer membrane usher protein [Citrobacter]

Protein Classification

fimbria/pilus outer membrane usher protein( domain architecture ID 11459850)

fimbria/pilus outer membrane usher family protein that may be involved in the export and/or assembly of fimbrial subunits across the outer membrane

CATH:  3.10.20.410|2.60.40.2070|2.60.40.2610|2.60.40.3110
Gene Ontology:  GO:0009297|GO:0015473|GO:0016020
PubMed:  18485872|7909802|19380723|7906046
SCOP:  4002249

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FimD COG3188
Outer membrane usher protein FimD/PapC [Cell motility, Extracellular structures];
27-759 3.69e-179

Outer membrane usher protein FimD/PapC [Cell motility, Extracellular structures];


:

Pssm-ID: 442421 [Multi-domain]  Cd Length: 817  Bit Score: 533.29  E-value: 3.69e-179
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380  27 DLYLDVTLNGNPVG--LVHFGYDNGK----LYAGANTLSKMGFR------FAPDATNAVCLNDIPQLTIDYNVQLQTLSL 94
Cdd:COG3188    56 TYYLDVYVNGQPLGrgDITFVADRDDgrlqPCLTPELLEQLGLKldalpaLLAADGQCVDLSAIPGASVRFDFATQRLDL 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380  95 TAPLSSLDlatTQLNSPTETAPTATTSRGALLNYDIYTQQGDESVINTfSELRAFN-AAGVLSTT----QLTQYSTEGYA 169
Cdd:COG3188   136 SVPQAALP---YQARGYVPPSLWDDGIPALLLNYDLNASRSRGRSGSA-SESRYLGlNSGLNLGAwrlrNNSSYSYSSGG 211

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 170 DNSFERLDTSWRTSFPDTMLALTVGDTLTSSlIWSRPTRIGGIQIGTDFGLQPYMPTTPLPAYLGSATLPSNVELYVDGV 249
Cdd:COG3188   212 GSGWQRLDTYLQRDIPALRSQLTLGDSYTSS-DWFDSVRFRGVQLASDFRMLPDSLRGYAPVVRGIAASNATVTVRQNGY 290

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 250 RYYNGEVPAGSFQINTMPNISGAGTGQVMMTDALGRTSVQNFSFYNDQQLLREGLTAWSAELGTVRENygySSFDYaSAP 329
Cdd:COG3188   291 VIYQTTVPPGPFEINDLPPTGGAGDLDVTVTEADGREQTFTVPFASVPQLLRPGLSRYSLAAGRYRRN---GSFDY-GPP 366

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 330 VLSATWRRGFSNTLTAGAHAETSDGLINAGFSNDWIPGTRsGTFSTSLAASS-----DSGQNGFLYSFGYRWS----GGR 400
Cdd:COG3188   367 FAQGTLRYGLSNGLTLYGGAEAAEDYQAGGLGAGFNLGAL-GALSADVTQSRarlpdDDTGSGQSYRLGYSKSfdetGTN 445

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 401 FNFSTSTTATSGdYRDVATHYGEPPPTLNSNT---------VIGYSLESAGNVSLSYLQFRYPHEN-AVRYANASWFKSV 470
Cdd:COG3188   446 FSLAGYRYSTRG-YRDLSDALDARDSGGDNSSyrprsrfqaTLSQSLGDGGSLYLSYSQQDYWDGSgRTRSYSLGYSNSL 524

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 471 tDNISLNAGFNQNIDDN--RDRSLYLMVTITTDNNLSASSTLQRTND-ETGYQLNASKTPPADGGWGWNLAASQQASRQ- 546
Cdd:COG3188   525 -RNISYSLSASRSRNGGgrRDRSVSLSLSIPLGNRSSASYSLSRDNGgGTSQQVGLSGSAPEDGGLGYSLSAGYGSGGDg 603

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 547 -SGQGEVGYLGRYGKAYAGFSRLPDNHYGYAGATGSLVTMGGGLFAAREINNGFAVVSTDGVPDVPVKLQNnlIGRSDDQ 625
Cdd:COG3188   604 nSGSANLSYRGSYGTLSAGYSYSRGYRQVSAGASGGLVAHAGGVTLSRRLGDTFALVDAPGAAGVPVNNER--GGRTDRR 681

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 626 GLLLVTPLNSYQKNLISIDPMDLPTNMRIARVETNATPADRSGTLVSFGITTVRAAQVILVDNQGKPIPEGSMAYAINGk 705
Cdd:COG3188   682 GYALVPYLTPYRRNRVSIDPLDLPDDVELDNTEQRVVPTRGAGVLVRFPTRRGRRALLTLRDADGKPLPFGAEVTDEGG- 760

                         730       740       750       760       770
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2519193380 706 GQSSVVGFDGMTWFDTLEQHNTLRVETDTG--SCRVQFDYPVSA-KRIVQIGPLVCR 759
Cdd:COG3188   761 QEVGIVGQDGQVYLSGLPPQGTLTVKWGDGaqQCRASYTLPASAdGQGIPRLPLTCR 817
 
Name Accession Description Interval E-value
FimD COG3188
Outer membrane usher protein FimD/PapC [Cell motility, Extracellular structures];
27-759 3.69e-179

Outer membrane usher protein FimD/PapC [Cell motility, Extracellular structures];


Pssm-ID: 442421 [Multi-domain]  Cd Length: 817  Bit Score: 533.29  E-value: 3.69e-179
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380  27 DLYLDVTLNGNPVG--LVHFGYDNGK----LYAGANTLSKMGFR------FAPDATNAVCLNDIPQLTIDYNVQLQTLSL 94
Cdd:COG3188    56 TYYLDVYVNGQPLGrgDITFVADRDDgrlqPCLTPELLEQLGLKldalpaLLAADGQCVDLSAIPGASVRFDFATQRLDL 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380  95 TAPLSSLDlatTQLNSPTETAPTATTSRGALLNYDIYTQQGDESVINTfSELRAFN-AAGVLSTT----QLTQYSTEGYA 169
Cdd:COG3188   136 SVPQAALP---YQARGYVPPSLWDDGIPALLLNYDLNASRSRGRSGSA-SESRYLGlNSGLNLGAwrlrNNSSYSYSSGG 211

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 170 DNSFERLDTSWRTSFPDTMLALTVGDTLTSSlIWSRPTRIGGIQIGTDFGLQPYMPTTPLPAYLGSATLPSNVELYVDGV 249
Cdd:COG3188   212 GSGWQRLDTYLQRDIPALRSQLTLGDSYTSS-DWFDSVRFRGVQLASDFRMLPDSLRGYAPVVRGIAASNATVTVRQNGY 290

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 250 RYYNGEVPAGSFQINTMPNISGAGTGQVMMTDALGRTSVQNFSFYNDQQLLREGLTAWSAELGTVRENygySSFDYaSAP 329
Cdd:COG3188   291 VIYQTTVPPGPFEINDLPPTGGAGDLDVTVTEADGREQTFTVPFASVPQLLRPGLSRYSLAAGRYRRN---GSFDY-GPP 366

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 330 VLSATWRRGFSNTLTAGAHAETSDGLINAGFSNDWIPGTRsGTFSTSLAASS-----DSGQNGFLYSFGYRWS----GGR 400
Cdd:COG3188   367 FAQGTLRYGLSNGLTLYGGAEAAEDYQAGGLGAGFNLGAL-GALSADVTQSRarlpdDDTGSGQSYRLGYSKSfdetGTN 445

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 401 FNFSTSTTATSGdYRDVATHYGEPPPTLNSNT---------VIGYSLESAGNVSLSYLQFRYPHEN-AVRYANASWFKSV 470
Cdd:COG3188   446 FSLAGYRYSTRG-YRDLSDALDARDSGGDNSSyrprsrfqaTLSQSLGDGGSLYLSYSQQDYWDGSgRTRSYSLGYSNSL 524

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 471 tDNISLNAGFNQNIDDN--RDRSLYLMVTITTDNNLSASSTLQRTND-ETGYQLNASKTPPADGGWGWNLAASQQASRQ- 546
Cdd:COG3188   525 -RNISYSLSASRSRNGGgrRDRSVSLSLSIPLGNRSSASYSLSRDNGgGTSQQVGLSGSAPEDGGLGYSLSAGYGSGGDg 603

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 547 -SGQGEVGYLGRYGKAYAGFSRLPDNHYGYAGATGSLVTMGGGLFAAREINNGFAVVSTDGVPDVPVKLQNnlIGRSDDQ 625
Cdd:COG3188   604 nSGSANLSYRGSYGTLSAGYSYSRGYRQVSAGASGGLVAHAGGVTLSRRLGDTFALVDAPGAAGVPVNNER--GGRTDRR 681

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 626 GLLLVTPLNSYQKNLISIDPMDLPTNMRIARVETNATPADRSGTLVSFGITTVRAAQVILVDNQGKPIPEGSMAYAINGk 705
Cdd:COG3188   682 GYALVPYLTPYRRNRVSIDPLDLPDDVELDNTEQRVVPTRGAGVLVRFPTRRGRRALLTLRDADGKPLPFGAEVTDEGG- 760

                         730       740       750       760       770
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2519193380 706 GQSSVVGFDGMTWFDTLEQHNTLRVETDTG--SCRVQFDYPVSA-KRIVQIGPLVCR 759
Cdd:COG3188   761 QEVGIVGQDGQVYLSGLPPQGTLTVKWGDGaqQCRASYTLPASAdGQGIPRLPLTCR 817
Usher pfam00577
Outer membrane usher protein; In Gram-negative bacteria the biogenesis of fimbriae (or pili) ...
 161-663 2.18e-32

Outer membrane usher protein; In Gram-negative bacteria the biogenesis of fimbriae (or pili) requires a two- component assembly and transport system which is composed of a periplasmic chaperone and an outer membrane protein which has been termed a molecular 'usher'. The usher protein is rather large (from 86 to 100 Kd) and seems to be mainly composed of membrane-spanning beta-sheets, a structure reminiscent of porins. Although the degree of sequence similarity of these proteins is not very high they share a number of characteriztics. One of these is the presence of two pairs of cysteines, the first one located in the N-terminal part and the second at the C-terminal extremity that are probably involved in disulphide bonds. The best conserved region is located in the central part of these proteins.


Pssm-ID: 425762 [Multi-domain]  Cd Length: 549  Bit Score: 132.81  E-value: 2.18e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 161 TQYSTEGYADNSFERLDTSWRTSFPDTMLALTVGDTLTSSLIWSrPTRIGGIQIGTDFGLQPYMPTTPLPAYLGSATLPS 240
Cdd:pfam00577  19 SNWTQSRGNTGKWQNSRTYLQRAIPQLKSRLTLGESYTSSDIFD-SFSFRGVQLASDDNMLPDSLRGYAPVIRGIARTNA 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 241 NVELYVDGVRYYNGEVPAGSFQINTMPNISGAGTGQVMMTDALGrtSVQNF--SFYNDQQLLREGLTAWSAELGTVRENY 318
Cdd:pfam00577  98 RVTIRQNGYVIYQTLVPPGPFEITDLYPTGSSGDLDVTVEEADG--SVQTFtvPYSSVPLLLRPGQVRYSLAAGRYRSGN 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 319 GYSSfdyaSAPVLSATWRRGFSNTLTAGAHAETSD----GLINAGFSNDWIPG-TRSGTFSTSLAA--SSDSGQN-GFLY 390
Cdd:pfam00577 176 SDQE----SPFFFQATASWGLPNGLTLYGGLQGADdyqaAALGLGRNLGDLGAlSVDVTQSRSQLDnqSSEQGQSyRFLY 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 391 SFGYRWSGGRFNFSTSTTATSG---------DYRDVATHYGEPPPTLNSNTV-IGYSLESAGNVSLSYLQFRYPHENAVR 460
Cdd:pfam00577 252 NKSLNETGTNFQLAGYRYSTRGfytladaldARMDGFDYYNLTYNKKNSYQLnVSQSLGGWGSLYLSGSRQTYWGTSGTS 331

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 461 YA-NASWFKSVTD-NISLNAGFNQNIDDN-RDRSLYLMVTITTDNNLS---ASSTLQRTND-ETGYQLNASKTPPADggw 533
Cdd:pfam00577 332 YNlQLGYNTNIGRvSVSLSWSYSRNEYENgEDDLLYLNLSIPFGRGLSranSSYSMTRNNSgRTTSNTGVYGTLLDD--- 408

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 534 gwNLAASQQASRQSGQGEVG-----YLGRYGKAYAGFSRLPDNHYGYAGATGSLVTMGGGLFAAREINNGFAVVSTDGVP 608
Cdd:pfam00577 409 --NLSYSVNAGRASDGRHTGsgnlsYQGSYGTVSGSYSYGRDYRQLNYSVSGGIVAHAHGVTLSQYLGDTRALIDAPGAA 486

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2519193380 609 DVPVklQNNLIGRSDDQGLLLVTPLNSYQKNLISIDPMDLPTNMRIARVETNATP 663
Cdd:pfam00577 487 GVRV--NNQTGVKTDWRGYAVVPYLTPYRENRVELDTNDLPDDVDLENTVVQVVP 539
PRK15213 PRK15213
outer membrane usher protein PefC;
58-705 1.73e-19

outer membrane usher protein PefC;


Pssm-ID: 237926 [Multi-domain]  Cd Length: 797  Bit Score: 93.65  E-value: 1.73e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380  58 LSKMGFRFAPDAT-NAVCLNDIPQLTIDYNVQLQTLSLTAPLSSLDlattqlnSPTETAPTATTSRGALLNYDIYTQQGD 136
Cdd:PRK15213   99 VSLEYYRSGYDAArQCYVLSKAPSVQVDFDYSTQSLTLSIPQAGLV-------KKPEPVEWDYGVPAFRLNYSANASKTS 171

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 137 ESVINTFS--ELRAFNAAGVLSTTqlTQYSTEGYADNSFERLDTSWRTSFPDTMLALTVGDTLTSSLIWSRpTRIGGIQI 214
Cdd:PRK15213  172 RQNTSAYGnaDLKANLGRWVLSSR--ASASRGAGGSNEFTTNDFTLTTAIKSLQGDLLVGKTQTGNSLLGS-FGFYGASL 248

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 215 GTDFGLQPYMPTTPLPAYLGSATLPSNVELYVDGVRYYNGEVPAGSFQINtmpNISGAGTGQVMMT--DALGRTSVQNFS 292
Cdd:PRK15213  249 RSNNDMLPWENRGYAPVISGIANGPSRVTISQNGYTLYSEVVPAGPFQLD---DVPLVGSGDLTVTveEEDGHKTTQVFP 325

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 293 FYNDQQLLREGLTAWSAELGTVREN-----------------YGYSSFDYASAPVLSATWRrGFSNTLTAGAH---AETS 352
Cdd:PRK15213  326 VAVLPGLLRPGEHEYNVAAGLKDDNydlkkpenglffagsygYGFDGLTLNAAGILNQNYQ-GGGVGVVQGLGyfgAVSA 404

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 353 DG-LINAGFSNdwipGTRSGTFSTSLAASSDSGQNGFLYSFGYRWsggrfnfststtaTSGDYRDVATHYgeppPT---L 428
Cdd:PRK15213  405 SGnLSQAKYQN----GDNKSGNSVSLKYAKSLSDTNNLQLLSYRY-------------QSEGYVDFADFY----PTdlyT 463

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 429 NSNT------VIGYSL-ESAGNVSLSYLQFRY-PHENAVRYANASW---FKSVTDNISLNAGFNQNIDDN---------- 487
Cdd:PRK15213  464 RSNTkrryedIFSQGLsQSLFFLSLSGWQEDYwPSSGKETGATVSLsttIKGVSVNLNGSYSKRNSLGENdysaslsisi 543

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 488 ----RDRSLYLMVTITTD--NNLSASSTLQRT-NDETGYQLNASKTppADGGWGWNLAASqqasrqsgqgevgYLGRYGK 560
Cdd:PRK15213  544 pftlFDKRHYSSTSVSYSrsGGTGFNSGVSGSlNDRLSYGLNTNRD--RDGGRSSSLNAS-------------YGFDRAQ 608

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 561 AYAGFS-RLPDNHYGYAGATGS-LVTMGGGLFAAREINNGFAVVStdgVPDVP-VKLQNNLIGRSDDQgllLVTPLNSYQ 637
Cdd:PRK15213  609 TNGMLShQGGGNTSGSVSVSGSvLGTPDAGILFTRVTGDTVAVVN---VKDVPgVKFNGSGPTDSKGN---TVVPLSSYD 682

                         650       660       670       680       690       700
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2519193380 638 KNLISIDPMDLPTNMRIARVETNATPADRSGTLVSFGITTVRAAQVILVDNQGKPIPEGSMAYAINGK 705
Cdd:PRK15213  683 LNTVTVNAENLPLNTELTTTSQNVVPTDKAVVYREFKALKVLRYILRVKQKDGRFVPGGSWARNEQGT 750
 
Name Accession Description Interval E-value
FimD COG3188
Outer membrane usher protein FimD/PapC [Cell motility, Extracellular structures];
27-759 3.69e-179

Outer membrane usher protein FimD/PapC [Cell motility, Extracellular structures];


Pssm-ID: 442421 [Multi-domain]  Cd Length: 817  Bit Score: 533.29  E-value: 3.69e-179
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380  27 DLYLDVTLNGNPVG--LVHFGYDNGK----LYAGANTLSKMGFR------FAPDATNAVCLNDIPQLTIDYNVQLQTLSL 94
Cdd:COG3188    56 TYYLDVYVNGQPLGrgDITFVADRDDgrlqPCLTPELLEQLGLKldalpaLLAADGQCVDLSAIPGASVRFDFATQRLDL 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380  95 TAPLSSLDlatTQLNSPTETAPTATTSRGALLNYDIYTQQGDESVINTfSELRAFN-AAGVLSTT----QLTQYSTEGYA 169
Cdd:COG3188   136 SVPQAALP---YQARGYVPPSLWDDGIPALLLNYDLNASRSRGRSGSA-SESRYLGlNSGLNLGAwrlrNNSSYSYSSGG 211

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 170 DNSFERLDTSWRTSFPDTMLALTVGDTLTSSlIWSRPTRIGGIQIGTDFGLQPYMPTTPLPAYLGSATLPSNVELYVDGV 249
Cdd:COG3188   212 GSGWQRLDTYLQRDIPALRSQLTLGDSYTSS-DWFDSVRFRGVQLASDFRMLPDSLRGYAPVVRGIAASNATVTVRQNGY 290

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 250 RYYNGEVPAGSFQINTMPNISGAGTGQVMMTDALGRTSVQNFSFYNDQQLLREGLTAWSAELGTVRENygySSFDYaSAP 329
Cdd:COG3188   291 VIYQTTVPPGPFEINDLPPTGGAGDLDVTVTEADGREQTFTVPFASVPQLLRPGLSRYSLAAGRYRRN---GSFDY-GPP 366

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 330 VLSATWRRGFSNTLTAGAHAETSDGLINAGFSNDWIPGTRsGTFSTSLAASS-----DSGQNGFLYSFGYRWS----GGR 400
Cdd:COG3188   367 FAQGTLRYGLSNGLTLYGGAEAAEDYQAGGLGAGFNLGAL-GALSADVTQSRarlpdDDTGSGQSYRLGYSKSfdetGTN 445

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 401 FNFSTSTTATSGdYRDVATHYGEPPPTLNSNT---------VIGYSLESAGNVSLSYLQFRYPHEN-AVRYANASWFKSV 470
Cdd:COG3188   446 FSLAGYRYSTRG-YRDLSDALDARDSGGDNSSyrprsrfqaTLSQSLGDGGSLYLSYSQQDYWDGSgRTRSYSLGYSNSL 524

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 471 tDNISLNAGFNQNIDDN--RDRSLYLMVTITTDNNLSASSTLQRTND-ETGYQLNASKTPPADGGWGWNLAASQQASRQ- 546
Cdd:COG3188   525 -RNISYSLSASRSRNGGgrRDRSVSLSLSIPLGNRSSASYSLSRDNGgGTSQQVGLSGSAPEDGGLGYSLSAGYGSGGDg 603

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 547 -SGQGEVGYLGRYGKAYAGFSRLPDNHYGYAGATGSLVTMGGGLFAAREINNGFAVVSTDGVPDVPVKLQNnlIGRSDDQ 625
Cdd:COG3188   604 nSGSANLSYRGSYGTLSAGYSYSRGYRQVSAGASGGLVAHAGGVTLSRRLGDTFALVDAPGAAGVPVNNER--GGRTDRR 681

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 626 GLLLVTPLNSYQKNLISIDPMDLPTNMRIARVETNATPADRSGTLVSFGITTVRAAQVILVDNQGKPIPEGSMAYAINGk 705
Cdd:COG3188   682 GYALVPYLTPYRRNRVSIDPLDLPDDVELDNTEQRVVPTRGAGVLVRFPTRRGRRALLTLRDADGKPLPFGAEVTDEGG- 760

                         730       740       750       760       770
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2519193380 706 GQSSVVGFDGMTWFDTLEQHNTLRVETDTG--SCRVQFDYPVSA-KRIVQIGPLVCR 759
Cdd:COG3188   761 QEVGIVGQDGQVYLSGLPPQGTLTVKWGDGaqQCRASYTLPASAdGQGIPRLPLTCR 817
Usher pfam00577
Outer membrane usher protein; In Gram-negative bacteria the biogenesis of fimbriae (or pili) ...
 161-663 2.18e-32

Outer membrane usher protein; In Gram-negative bacteria the biogenesis of fimbriae (or pili) requires a two- component assembly and transport system which is composed of a periplasmic chaperone and an outer membrane protein which has been termed a molecular 'usher'. The usher protein is rather large (from 86 to 100 Kd) and seems to be mainly composed of membrane-spanning beta-sheets, a structure reminiscent of porins. Although the degree of sequence similarity of these proteins is not very high they share a number of characteriztics. One of these is the presence of two pairs of cysteines, the first one located in the N-terminal part and the second at the C-terminal extremity that are probably involved in disulphide bonds. The best conserved region is located in the central part of these proteins.


Pssm-ID: 425762 [Multi-domain]  Cd Length: 549  Bit Score: 132.81  E-value: 2.18e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 161 TQYSTEGYADNSFERLDTSWRTSFPDTMLALTVGDTLTSSLIWSrPTRIGGIQIGTDFGLQPYMPTTPLPAYLGSATLPS 240
Cdd:pfam00577  19 SNWTQSRGNTGKWQNSRTYLQRAIPQLKSRLTLGESYTSSDIFD-SFSFRGVQLASDDNMLPDSLRGYAPVIRGIARTNA 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 241 NVELYVDGVRYYNGEVPAGSFQINTMPNISGAGTGQVMMTDALGrtSVQNF--SFYNDQQLLREGLTAWSAELGTVRENY 318
Cdd:pfam00577  98 RVTIRQNGYVIYQTLVPPGPFEITDLYPTGSSGDLDVTVEEADG--SVQTFtvPYSSVPLLLRPGQVRYSLAAGRYRSGN 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 319 GYSSfdyaSAPVLSATWRRGFSNTLTAGAHAETSD----GLINAGFSNDWIPG-TRSGTFSTSLAA--SSDSGQN-GFLY 390
Cdd:pfam00577 176 SDQE----SPFFFQATASWGLPNGLTLYGGLQGADdyqaAALGLGRNLGDLGAlSVDVTQSRSQLDnqSSEQGQSyRFLY 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 391 SFGYRWSGGRFNFSTSTTATSG---------DYRDVATHYGEPPPTLNSNTV-IGYSLESAGNVSLSYLQFRYPHENAVR 460
Cdd:pfam00577 252 NKSLNETGTNFQLAGYRYSTRGfytladaldARMDGFDYYNLTYNKKNSYQLnVSQSLGGWGSLYLSGSRQTYWGTSGTS 331

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 461 YA-NASWFKSVTD-NISLNAGFNQNIDDN-RDRSLYLMVTITTDNNLS---ASSTLQRTND-ETGYQLNASKTPPADggw 533
Cdd:pfam00577 332 YNlQLGYNTNIGRvSVSLSWSYSRNEYENgEDDLLYLNLSIPFGRGLSranSSYSMTRNNSgRTTSNTGVYGTLLDD--- 408

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 534 gwNLAASQQASRQSGQGEVG-----YLGRYGKAYAGFSRLPDNHYGYAGATGSLVTMGGGLFAAREINNGFAVVSTDGVP 608
Cdd:pfam00577 409 --NLSYSVNAGRASDGRHTGsgnlsYQGSYGTVSGSYSYGRDYRQLNYSVSGGIVAHAHGVTLSQYLGDTRALIDAPGAA 486

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2519193380 609 DVPVklQNNLIGRSDDQGLLLVTPLNSYQKNLISIDPMDLPTNMRIARVETNATP 663
Cdd:pfam00577 487 GVRV--NNQTGVKTDWRGYAVVPYLTPYRENRVELDTNDLPDDVDLENTVVQVVP 539
PRK15213 PRK15213
outer membrane usher protein PefC;
58-705 1.73e-19

outer membrane usher protein PefC;


Pssm-ID: 237926 [Multi-domain]  Cd Length: 797  Bit Score: 93.65  E-value: 1.73e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380  58 LSKMGFRFAPDAT-NAVCLNDIPQLTIDYNVQLQTLSLTAPLSSLDlattqlnSPTETAPTATTSRGALLNYDIYTQQGD 136
Cdd:PRK15213   99 VSLEYYRSGYDAArQCYVLSKAPSVQVDFDYSTQSLTLSIPQAGLV-------KKPEPVEWDYGVPAFRLNYSANASKTS 171

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 137 ESVINTFS--ELRAFNAAGVLSTTqlTQYSTEGYADNSFERLDTSWRTSFPDTMLALTVGDTLTSSLIWSRpTRIGGIQI 214
Cdd:PRK15213  172 RQNTSAYGnaDLKANLGRWVLSSR--ASASRGAGGSNEFTTNDFTLTTAIKSLQGDLLVGKTQTGNSLLGS-FGFYGASL 248

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 215 GTDFGLQPYMPTTPLPAYLGSATLPSNVELYVDGVRYYNGEVPAGSFQINtmpNISGAGTGQVMMT--DALGRTSVQNFS 292
Cdd:PRK15213  249 RSNNDMLPWENRGYAPVISGIANGPSRVTISQNGYTLYSEVVPAGPFQLD---DVPLVGSGDLTVTveEEDGHKTTQVFP 325

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 293 FYNDQQLLREGLTAWSAELGTVREN-----------------YGYSSFDYASAPVLSATWRrGFSNTLTAGAH---AETS 352
Cdd:PRK15213  326 VAVLPGLLRPGEHEYNVAAGLKDDNydlkkpenglffagsygYGFDGLTLNAAGILNQNYQ-GGGVGVVQGLGyfgAVSA 404

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 353 DG-LINAGFSNdwipGTRSGTFSTSLAASSDSGQNGFLYSFGYRWsggrfnfststtaTSGDYRDVATHYgeppPT---L 428
Cdd:PRK15213  405 SGnLSQAKYQN----GDNKSGNSVSLKYAKSLSDTNNLQLLSYRY-------------QSEGYVDFADFY----PTdlyT 463

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 429 NSNT------VIGYSL-ESAGNVSLSYLQFRY-PHENAVRYANASW---FKSVTDNISLNAGFNQNIDDN---------- 487
Cdd:PRK15213  464 RSNTkrryedIFSQGLsQSLFFLSLSGWQEDYwPSSGKETGATVSLsttIKGVSVNLNGSYSKRNSLGENdysaslsisi 543

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 488 ----RDRSLYLMVTITTD--NNLSASSTLQRT-NDETGYQLNASKTppADGGWGWNLAASqqasrqsgqgevgYLGRYGK 560
Cdd:PRK15213  544 pftlFDKRHYSSTSVSYSrsGGTGFNSGVSGSlNDRLSYGLNTNRD--RDGGRSSSLNAS-------------YGFDRAQ 608

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 561 AYAGFS-RLPDNHYGYAGATGS-LVTMGGGLFAAREINNGFAVVStdgVPDVP-VKLQNNLIGRSDDQgllLVTPLNSYQ 637
Cdd:PRK15213  609 TNGMLShQGGGNTSGSVSVSGSvLGTPDAGILFTRVTGDTVAVVN---VKDVPgVKFNGSGPTDSKGN---TVVPLSSYD 682

                         650       660       670       680       690       700
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2519193380 638 KNLISIDPMDLPTNMRIARVETNATPADRSGTLVSFGITTVRAAQVILVDNQGKPIPEGSMAYAINGK 705
Cdd:PRK15213  683 LNTVTVNAENLPLNTELTTTSQNVVPTDKAVVYREFKALKVLRYILRVKQKDGRFVPGGSWARNEQGT 750
PRK15223 PRK15223
fimbrial biogenesis outer membrane usher protein;
211-744 2.22e-19

fimbrial biogenesis outer membrane usher protein;


Pssm-ID: 185145 [Multi-domain]  Cd Length: 836  Bit Score: 93.15  E-value: 2.22e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 211 GIQIGTDFGLQPYMPTTPLPAYLGSATLPSNVELYVDGVRYYNGEVPAGSFQINTMPNISGAGTGQVMMTDALGRTSVQN 290
Cdd:PRK15223  256 GVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFV 335

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 291 FSFYNDQQLLREGLTAWSAELGTvrenygYSSFDYAS--APVLSATWRRGFSNTLTA--GAHAETSDGLINAGFS---ND 363
Cdd:PRK15223  336 VPYQTPAIALHQGYLKYSLLAGR------YRSSDSATdkAQIAQATLMYGLPWNLTAygGIQSATHYQAASLGLGgslGR 409

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 364 W------IPGTRSGT--------------FSTSLAASsdsGQNGFLYSFGYRWSGGRfnfstSTTATSGDYRD----VAT 419
Cdd:PRK15223  410 WgslsvdGSDTHSQRqgeavqqgaswrlrYSNQLTAT---GTNFFLTRWQYASQGYN-----TLSDVLDSYRHdgnrLWS 481

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 420 HYGEPPPTLNSNTVIGYSL-ESAGNVSLSY----LQFRYPHENAVRYanaSWFKS-----VTDNISLNAGFNQNIDDNRD 489
Cdd:PRK15223  482 WRENLQPSSRTTLMLSQSWgRHLGNLSLTGsrtdWRNRPGHDDSYGL---SWGTSigggsLSLNWNQNRTLWRNGAHRKE 558

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 490 RSLYLMVTI----TTDNNLSASSTLQRTNDETGYQLNASKTPPADGGWGWNLAASQQASRQSGQGEVGYLGrygKAYAGF 565
Cdd:PRK15223  559 NITSLWFSMplsrWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGGGNNSALH---LAWNGA 635

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 566 SRLPDNHYGYAGA--------TGSLVTMGGGLFAAREINNGFAVVSTDGVPDVPVKLQNNLigRSDDQGLLLVTPLNSYQ 637
Cdd:PRK15223  636 YGLLGGDYSYSRAmrqmgvniAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGV--KTDFRGDTTVGNLNVYQ 713

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 638 KNLISIDPMDLPTNMRIARVETNATPADRSGTLVSFGITTVRAAQVILVDNQGKPIPEGSMAYAINGKGQSSVVGFDGMT 717
Cdd:PRK15223  714 ENTVSLDPSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQDGSAALVDTDSQV 793

                         570       580
                  ....*....|....*....|....*..
gi 2519193380 718 WFDTLEQHNTLRVETDTGSCRVQFDYP 744
Cdd:PRK15223  794 YLTGLADKGELTVKWGAQQCRVNYQLP 820
PRK15235 PRK15235
outer membrane fimbrial usher protein SefC; Provisional
 191-722 1.21e-18

outer membrane fimbrial usher protein SefC; Provisional


Pssm-ID: 185150 [Multi-domain]  Cd Length: 814  Bit Score: 90.94  E-value: 1.21e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 191 LTVGDTLTSS-LIWSRPTRigGIQIGTDFGLQPYMPTTPLPAYLGSATLPSNVELYVDGVRYYNGEVPAGSFQINTMPNI 269
Cdd:PRK15235  221 LTVGDKYTSAdLFDSVPFR--GFSLNKDESMIPFSQRTYYPTIRGIAKTNATVEVRQNGYLIYSTSVPPGQFEIGREQIA 298

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 270 S-GAGTGQVMMTDALGRTSVQNFSF-YNDQQL-LREGLTAWSAELGTVREnygySSFDYASAPVLSATWRRG--FSNTLT 344
Cdd:PRK15235  299 DlGVGVGVLDVSIYEKNGQVQNYTVpYSTPVLsLPDGYSKYSVTIGRYRE----VNNDYIDPVFFEGTYIYGlpYGFTLF 374

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 345 AGAHAETSDGLINAGFSNDWIP-GTRSGTFSTSLAASSDSGQNGFLYSFGYRWSGGRFNFSTSTTA---TSGDYRDV--A 418
Cdd:PRK15235  375 GGVQWANIYNSYAIGASKDIGEyGALSFDWKTSVSKTDTSNENGHAYGIRYNKNIAQTNTEVSLAShyyYSKNYRTFseA 454

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 419 THYGEPPPTLNSNT------VIGYSLESAGNVSLSYLQFRYPHENAVRYANASWFKSVtDNISLNAGFNQNI----DDNR 488
Cdd:PRK15235  455 IHSSEHDEFYDKNKksttsmLLSQALGSLGSVNLSYNYDKYWKHEGKKSIIASYGKNL-NGVSLSLSYTKSTskisEENE 533

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 489 DR-SLYLMVTITTDNNLSASSTLQRTNDE----------TGYQLNASKTPPADGGwgwnlAASQQASRQSGQGEVGYLGR 557
Cdd:PRK15235  534 DLfSFLLSVPLQKLTNHEMYATYQNSSSSkhdmnhdlgiTGVAFDSQLTWQARGQ-----IEDKSKNQKATFLNASWRGT 608

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 558 YGKAYAGFSRLPDNHYGYAGATGSLVTMGGGLFAAREINNGFAVVSTDGVPDVPVKlqnNLIG-RSDDQGLLLVTPLNSY 636
Cdd:PRK15235  609 YGEIGANYSHNEINRDIGMNVSGGVIAHSSGITFGQSISDTAALVEAKGVSGAKVL---GLPGvRTDFRGYTISSYLTPY 685

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 637 QKNLISIDPMDLPTNMRIARVETNATPADRSGTLVSFGITTVRAAQVILVDNQGKPIPEGSMAYAINGKG---QSSVVGF 713
Cdd:PRK15235  686 MNNFISIDPTTLPINTDIRQTDIQVVPTEGAIVKAVYKTSVGTNALIRITRTNGKPLALGTVLSLKNNDGviqSTSIVGE 765


                  ....*....
gi 2519193380 714 DGMTWFDTL 722
Cdd:PRK15235  766 DGQAYVSGL 774
PRK15298 PRK15298
fimbrial outer membrane usher protein;
191-746 1.24e-16

fimbrial outer membrane usher protein;


Pssm-ID: 185198 [Multi-domain]  Cd Length: 848  Bit Score: 84.42  E-value: 1.24e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 191 LTVGDTLTSSLIW-SRPTRigGIQIGTDFGLQPYMPTTPLPAYLGSATLPSNVELYVDGVRYYNGEVPAGSFQINTMPNI 269
Cdd:PRK15298  246 FTAGDSNTPSDVFdSVPFR--GLQLTSDDQMQPNSQRGYAPTIRGIARSNAQVIVRQNGYIAYQTAVSPGEFEINDMFPT 323

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 270 SGAGTGQVMMTDALGrtSVQNF--SFYNDQQLLREGLTAWSAELGTVRENYGYSSFDYASAPVLsatWRRGFSNTLTAGA 347
Cdd:PRK15298  324 GSNGDYDVTVKEADG--SEQHFivPYSSLPILQRTGRAKYSVTVGKYRDYNNHTLDDFGQATLL---YGLPWGITLYGGS 398

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 348 HAeTSDGLINAGF---SNDWIPGTRS--GTFStslAASSDSGQNGFLYSFGYRWSGGRFnfSTSTTATSGDYRDVATHYG 422
Cdd:PRK15298  399 QI-AGDKYQSVAFgvgQNMQMLGAISldGIWS---HAKFDDGRKEIGQSWRVRYSKGVV--STGTTFSLAGYRYASENYN 472

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 423 EPPPTLNSN----------------TVIGYSLESAGNVSLSYLQFRYPH-----ENAVRYANASWFK-SVTDNISLNAGF 480
Cdd:PRK15298  473 SLSEVINPDddfydnygkrhnrfeaSVNQQISNTLGSLTLSWVKEDYWHsaqqmESLSASYNNSWGPvSYTLSYSYNKNT 552

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 481 NQ----NIDDNRDRSLY----------LMVTITT-DNNLSASSTLQ-RTNDETGYQLNASKTPPADGGWGWNLAASQQAS 544
Cdd:PRK15298  553 YQyrsdNDDDDNDDDRYnqndrlftlsLHVPFTVfDSRLYASYMLNtRKHDATVNSTTLSGTALRDRNLNWSLQQSHSTQ 632

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 545 R-QSGQGEVGYLGRYGKAYAGFSRLPDNHYGYAGATGSLVTMGGGLFAAREINNGFAVVSTDGVPDVPVKLQNNLIgrSD 623
Cdd:PRK15298  633 DgDSGGVNASYKGTYANLNAGYNQSPDSQQVSYGISGGILAHENGITLSQPITGAAILIKAPGASGVSVENQTGVA--TD 710

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 624 DQGLLLVTPLNSYQKNLISIDPMDLPTNMRIARVETNATPADRSGTLVSFGITTVRAAQVILVDNQGKPIPEGSMAyAIN 703
Cdd:PRK15298  711 FRGYTVIPNVTPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVRAAYDTHKGYRVLLTLTRSNGEPVPFGATA-SVD 789

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|....*
gi 2519193380 704 GKGQ--SSVVGFDGMTWFDTLEQHNTLRVETDTGSCRVQFDYPVS 746
Cdd:PRK15298  790 GQDAnlASIVGDKGQVFLSGLPEEGLLLVNWGSASCRADYRLDIS 834
PRK09828 PRK09828
putative fimbrial outer membrane usher protein; Provisional
 190-752 1.30e-16

putative fimbrial outer membrane usher protein; Provisional


Pssm-ID: 182098 [Multi-domain]  Cd Length: 865  Bit Score: 84.41  E-value: 1.30e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 190 ALTVGDTLTSsliwsrpTRIGGIQIGTDFGLQPYMPTTPLPAYLGSATLPSNVELYVDGVRYYNGEVPAGSFQINtmpNI 269
Cdd:PRK09828  252 SYTTGETFDS-------VSIRGIRLYSDSRMLPPGLASYAPIIRGVANSNAKVTITQSGYKIYETTVPPGAFVID---DL 321

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 270 SGAGTGQ-----VMMTDALGRTSVQNFSfyNDQQLLREGLTAWSAELGTVRENygyssfDYASAP-VLSATWRRGFSNTL 343
Cdd:PRK09828  322 SPSGYGSdlivtIEEADGSKRTFSQPFS--SVVQMLRPGVGRWDISAGQVLDD------SLQDEPnLGQASYYYGLNNYL 393

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 344 TAGAHAETSD-----GLINAGFSndwipgTRSGTFSTSLAASSDS--------GQNgflysfgYRWSGGRFNFSTSTTAT 410
Cdd:PRK09828  394 TGYTGIQYTDnnytaGLLGLGMN------TSVGAFAFDVTHSNAEipddktyqGQS-------YRLTWNKLFEATSTSFN 460

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 411 SGDYR----------DVATHYGE---PPPTLNSNTVIGYS-LESAGNVSLSY-LQFRYPHENAVrYANASWF------KS 469
Cdd:PRK09828  461 VAAYRystqdylglnDALTLIDEvkhPEQDLEPKSMRNYSrMKNQVTVSINQpLKFEKKDYGSF-YLSGSWSdywasgQS 539

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 470 VTD------------NISLNAGFNQNIDDNRDRSLYLMVTITTDNNLSAS---------STLQRTNDETGYQLNASKTPP 528
Cdd:PRK09828  540 RSNysvgysnsaswgSYSVSLQRSWNEDGEKDDSVYLSFSIPIENLLGTErrssgfqsiDTQLNSDFKGNNQLNVSSSGN 619

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 529 A-DGGWGWNLAASQQASRQSGQ-----GEVGYLGRYGKAYAGFSRLPDNHYGYAGAT-GSLVTMGGGL-FAAREI--NNG 598
Cdd:PRK09828  620 SeDNRISYSVNTGYSMNKNSKDlsyvgGYASYESPWGTLSGSASASSDNSRQYSLSTdGGFVLHSGGLtFSNDSFsdSDT 699

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 599 FAVVSTDGVPDVPVKLQNNLIGRSddqGLLLVTPLNSYQKNLISIDPMDLPTNMRIARVETNATPADRSGTLVSFGITTV 678
Cdd:PRK09828  700 LALVKAPGAKGARINYGNSTIDRW---GYGVTSALSPYRENRVALDINTLENDVELKSTSAVAVPRQGAVVLADFETDQG 776

                         570       580       590       600       610       620       630
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2519193380 679 RAAQVILVDNQGKPIPEGSMAYaiNGKGQS-SVVGFDGMTWFDTLEQHNTLRV----ETDTGSCRVQFDYPVSAKRIVQ 752
Cdd:PRK09828  777 RSAIMNITRSDGKNIPFAADVY--DEQGNViGNVGQGGQAFVRGIEDQGELRIrwleEGKPVSCLAHYQQPATAEKIGQ 853
PRK15273 PRK15273
fimbrial biogenesis outer membrane usher protein;
123-744 1.50e-10

fimbrial biogenesis outer membrane usher protein;


Pssm-ID: 185176 [Multi-domain]  Cd Length: 881  Bit Score: 64.79  E-value: 1.50e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 123 GALLNYDIYTQ-------QGDESVINTFSELRAFNAAGVLSTTQLTQYSTEGYADNSFERLDTSWRT-----SFPDTMLA 190
Cdd:PRK15273  155 GIILDYNINNQlrhdqesGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRyyayrALPTLGAK 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 191 LTVGDTLTSSLIWSRPTRIGGIQIGTDFGLQPYMPTTPlPAYLGSATLPSNVELYVDGVRYYNGEVPAGSFQINTMpNIS 270
Cdd:PRK15273  235 LTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYA-PEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDL-NQS 312

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 271 GAGTGQVMMTDALGRTSVQNFSFYNDQQLLREGLTAWSAELGTVRE-NYGYSSFDYASApvlSATWrrGFSN--TLTAGA 347
Cdd:PRK15273  313 VSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDwDHHPITGTFASA---EASW--GVTNgwSLYGGA 387

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 348 HAETSDGLINAGFSNDW-IPGTRSGTFSTSLA-ASSDSGQNG-FLYSFGYRWSGGR-------------FNFSTSTTATS 411
Cdd:PRK15273  388 IGESNYQAVALGSGKDLgVVGAVAVDITHSIAhMPQDDGFDGeTLQGNSYRISYSRdfdeidsrltfagYRFSEKNFMSM 467

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 412 GDYRDVATHYGEPPPTLNSNTVIGYSL---ESAGNVSLSYLQFRY---PHENAVRYAnASWFKSVTDNISLNA---GFNQ 482
Cdd:PRK15273  468 SDYLDAKTYHHLNAGHEKERYTVTYNQnfrEQGMSAYFSYSRSTFwdsPDQSNYNLS-LSWYFDLGSIKNLSAslnGYRS 546

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 483 NIDDNRDRSLYLMVTITTDNN-LSASSTLQRTN--DETGYQLNASKtppadgGWGWNLAASQqaSRQSGQGEvGYLGRYG 559
Cdd:PRK15273  547 EYNGDKDDGVYISLSVPWGNDsISYNGTFNGSQhrNQLGYSGHSQN------GDNWQLHVGQ--DEQGAQAD-GYYSHQG 617

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 560 kAYAGFSRLPDNHYGYAGATG-------SLVTMGGGLFAAREINNGFAVVSTDGVPDVPVKlQNNLIGRSDDQGLLLVTP 632
Cdd:PRK15273  618 -ALTDIDLSADYEEGSYRSLGmslrggmTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVS-GNGSPTSTNIFGKAVIAD 695

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 633 LNSYQKNLISIDPMDLPTNMRIARVETNATPADRSGTLVSFGITTVRAAQVILVDNQGKPIPEGsmAYAINGKGQS-SVV 711
Cdd:PRK15273  696 VGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFG--AEVKNERQQQlGLV 773

                         650       660       670
                  ....*....|....*....|....*....|...
gi 2519193380 712 GFDGMTWFDTLEQHNTLRVETDtGSCRVQFDYP 744
Cdd:PRK15273  774 ADDGNAWLAGVKAGETLKVFWD-GAAQCEASLP 805
PapC_C pfam13953
PapC C-terminal domain; The PapC C-terminal domain is a structural domain found at the ...
 685-744 2.16e-09

PapC C-terminal domain; The PapC C-terminal domain is a structural domain found at the C-terminus of the E. coli PapC protein. Pili are assembled using the chaperone usher system. In E.coli this is composed of the chaperone PapD and the usher PapC. This domain represents the C-terminal domain from PapC and its homologs. This domain has a beta-sandwich structure similar to the plug domain of PapC.


Pssm-ID: 464055 [Multi-domain]  Cd Length: 66  Bit Score: 54.15  E-value: 2.16e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2519193380 685 LVDNQGKPIPEGSMAYaINGKGQSSVVGFDGMTWFDTLEQHNTLRV---ETDTGSCRVQFDYP 744
Cdd:pfam13953   4 LTDADGKPLPFGATVT-DEGGGQSGIVGQDGQVYLRGLPDQGRLRVkwgDGAGQQCRASYTLP 65
PRK15207 PRK15207
outer membrane usher protein LpfC;
159-748 7.13e-09

outer membrane usher protein LpfC;


Pssm-ID: 185129 [Multi-domain]  Cd Length: 842  Bit Score: 59.54  E-value: 7.13e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 159 QLTQYSTEGYAD--NSFERLDTSWRTSFPDTMLALTVGDTLTSSLIWSRpTRIGGIQIGTDFGLQPYMPTTPLPAYLGSA 236
Cdd:PRK15207  221 RLRNYSTWNRTDgkNQWDNIGTSLSRAIIPLKSQLTLGDTATAGDIFDS-VQMRGALLASDEEMLPDSQRGFAPVVRGIA 299

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 237 TLPSNVELYVDGVRYYNGEVPAGSFQINTMPNISGAGTGQVMMTDALGrtSVQNF--SFYNDQQLLREGLTAWSAELGTV 314
Cdd:PRK15207  300 KSNAEVSIEQNGYVIYRTFVQPGAFEINDLYPTSNSGDLTVIIKEADG--SEQRFiqPFSSVAIFQREGHLKYSLAAGEY 377

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 315 RE-NYGYSSFDYASapvLSATWRRGFSNTLTAGAHAETSDGLINAGFSNDW-----IPGTRSGTFSTSLAASSDSGQN-G 387
Cdd:PRK15207  378 RAgNYDSAKPKFGQ---LDAMYGLPWGMTAYGGALLSADYNALALGLGKNFgyigaISIDVTQAKSQLRNNEKSEGQSyR 454

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 388 FLYS-----------FGYRWS-GGRFNFSTSTTATSGDYRDVATHYGEPPPTLNsntvIGYSLESAGNVSLSYLQFRYPH 455
Cdd:PRK15207  455 FLYSksfesgtdfrlLGYKYStSGYYTFQEATDVRSDADSDYRRYHKRSQIQGN----ITQQLGAYGSVYFNMTQQDYWN 530

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 456 ENAVRYANASWFKSVTDNISLNAGFNQNID---DNRDRSLYLMVTITTDNNLSASSTLQRTNDETGYQLNASKTPPADGG 532
Cdd:PRK15207  531 DDGKQNSLSAGYNGRIGRVNYSVAYTWTKSpewDESDRLWSFSMSIPLGRAWSNYRMTTDQNGRTNQQLGVSGTLLEDRN 610

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 533 WGWNL--AASQQASRQSGQGEVGYLGRYGKAYAGFSRLPDNHYGYAGATGSLVTMGGGLFAAREINNGFAVVSTDGVPDv 610
Cdd:PRK15207  611 LSYSVqeGYTSNGVGNSGSVNLGYQGGSGNISVGYNYSKDNQQVNYGVRGGVIVHSEGITLSQPLGESMAIISAPGARG- 689

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 611 pVKLQNNLIGRSDDQGLLLVTPLNSYQKNLISIDPMDLPTNMRIARVETNATPAdrSGTLVSFGITTVRAAQVI--LVDN 688
Cdd:PRK15207  690 -AHVVNNGGVEVDWMGNAVVPYLTPYRETEVSLRSDSLGQNVDLQEAFQKVVPT--RGAIVRARFDTRVGYRVLmsLKQA 766

                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2519193380 689 QGKPIPEGSMAYAINGKGQ-SSVVGFDGMTWFDTLEQHNTLRV---ETDTGSCRVQFDYPVSAK 748
Cdd:PRK15207  767 NGNAVPFGATATLIDTTKEaSSIVGEEGQLYISGMPEEGELQVswgNDQAQQCRVPFRLPEQKD 830
PRK15255 PRK15255
fimbrial outer membrane usher protein StdB; Provisional
 123-759 6.85e-07

fimbrial outer membrane usher protein StdB; Provisional


Pssm-ID: 185167 [Multi-domain]  Cd Length: 829  Bit Score: 52.84  E-value: 6.85e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 123 GALLNYDIYT-----QQGDESVINTFSELRAFN--AAGVLSTTQLTQY-STEGYADNSFERLDTSWRTSFPDTMLALTVG 194
Cdd:PRK15255  161 AGLLDYSLMVnrympQQGETSTSYSLYGTAGFNlgAWRLRSDYQYSRFdSGQGASQSDFYLPQTYLFRALPALRSKLTLG 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 195 DTLTSSLIWSRpTRIGGIQIGTDFGLQPYMPTTPLPAYLGSATLPSNVELYVDGVRYYNGEVPAGSFQINTMP-NISGAG 273
Cdd:PRK15255  241 QTYLSSAIFDS-FRFAGLTLASDERMLPPSLQGYAPKISGIANSNAQVTVSQNGRILYQTRVSPGPFELPDLSqNISGNL 319

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 274 TGQVMMTDALGRTSVQNFSfyNDQQLLREGLTAWSAELGtvRENYGYSSFDYASAPVL---SATWRRGFSNTLTAGAHAE 350
Cdd:PRK15255  320 DVSVRESDGSVRTWQVNTA--SVPFMARQGQVRYKVAAG--RPLYGGTHNNSTVSPDFllgEATWGAFNNTSLYGGLIAS 395

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 351 TSD---GLINAGfSNDWIPGTRSGTFSTSLAA-SSDSGQNGFLYSFGYrwsGGRFNFSTSTTATSGdYRDVATHYGEPPP 426
Cdd:PRK15255  396 TGDyqsAALGIG-QNMGLLGALSADVTRSDARlPHGQKQSGYSYRINY---AKTFDKTGSTLAFVG-YRFSDRHFLSMPE 470

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 427 TLNSNTVIG-------------YS-----LESAGNVSLSYLQFRYPHENAVRYANASWFKSVTDNISLNAGF----NQNI 484
Cdd:PRK15255  471 YLQRRATDGgdawhekqsytvtYSqsvpvLNMSAALSVSRLNYWNAQSNNNYMLSFNKVFSLGDLQGLSASVsfarNQYT 550

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 485 DDNRDRSLYLMVTITTDNNLSASSTLQRTNdETGYQLNASKTPPADGGWGWNLAASQQ----ASRQSGQGEVGYLGRYGK 560
Cdd:PRK15255  551 GGGSQNQVYATISIPWGDSRQVSYSVQKDN-RGGLQQTVNYSDFHNPDTTWNISAGHNrydtGSNSSFSGSVQSRLPWGQ 629

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 561 AYAGFSRLPDNH-------YGYAGATGSlvtmGGGLFAAREINNGFAVVSTDGVPDVPVklqNNLIGRSDDQGLLLVTPL 633
Cdd:PRK15255  630 AAADATLQPGQYrslglswYGSVTATAH----GAAFSQSMAGNEPRMMIDTGDVAGVPV---NGNSGVTNRFGVGVVSAG 702

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 634 NSYQKNLISIDPMDLPTNmriarVETNATPADRSGTLVSFGITTVRAAQ-------VILVDnqGKPIPEGSMAYAINGKG 706
Cdd:PRK15255  703 SSYRRSDISVDVAALPED-----VDVSSSVISQVLTEGAVGYRKIDASQgeqvlghIRLAD--GASPPFGALVVSGKTGR 775

                         650       660       670       680       690
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2519193380 707 QSSVVGFDGMTWFDTL--EQHNTLRVETDTG-SCRVQFDYPVSAKRivqiGPLV--CR 759
Cdd:PRK15255  776 TAGMVGDDGLAYLTGLsgEDRRTLNVSWDGRvQCRLTLPETVTLSR----GPLLlpCR 829
PRK15284 PRK15284
putative fimbrial outer membrane usher protein StfC; Provisional
 473-715 7.55e-04

putative fimbrial outer membrane usher protein StfC; Provisional


Pssm-ID: 185184 [Multi-domain]  Cd Length: 881  Bit Score: 42.93  E-value: 7.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 473 NISLNaGFNQNIDDNRDRSLYLMVTI--------------TTDNNLSASSTLQRTNDETGYQLNASKT---PPADGGWGW 535
Cdd:PRK15284  560 SISVT-GYRYEYDNQADKGVYISLSIpwgdnstvsyngnyGSGSDSSQVGYFSRVDDATHYQLNVGTSdnhTSVDGYYSH 638

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 536 NLAASQ---QASRQSGQGEVGYLGRYGkayagfsrlpdnhygyaGATgsLVTMGGGLFAAREINNGFAVVSTDGVPDVPV 612
Cdd:PRK15284  639 DGSLAQvdlSANYHEGQYTSAGLSLQG-----------------GAT--LTAHGGALHRTQNMGGTRLLIDADGVANVPV 699

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2519193380 613 K-----LQNNLIGRSddqgllLVTPLNSYQKNLISIDPMDLPTNMRIARVETNATPADRSGTLVSFGITTVRAAQVILVD 687
Cdd:PRK15284  700 EgngaaVYTNMFGKA------VVADVNNYYRNQAYIDLNNLPEDAEATQSVVQATLTEGAIGYRKFAVISGQKAMAVLRL 773

                         250       260
                  ....*....|....*....|....*...
gi 2519193380 688 NQGKPIPEGSMAYAINGKgQSSVVGFDG 715
Cdd:PRK15284  774 RDGSHPPFGAEVKNDNQQ-QVGLVDDDG 800
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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