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Conserved domains on  [gi|2511838193|ref|WP_284004107|]
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ABC transporter permease [Sinorhizobium sp. 8-89]

Protein Classification

ABC transporter permease( domain architecture ID 11439530)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0140359|GO:0042626|GO:0016020
PubMed:  18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 21-272 3.79e-68

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


:

Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 211.89  E-value: 3.79e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  21 RLSTFAFSVYTAILLAFLFAPIAIVVLFSFDAKGLAAFPFEAPTTEWYVSVARDPIMRKAAVNSVFVALGTTICCILIGT 100
Cdd:COG1177     3 RLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGT 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 101 SAAFAIARFRFRRASIFAGLMALPLLLPHLLLGISLLSFFTSLGIGLSVWTAIIGHVLITLPFLVFTLTSRIGSLDPQIP 180
Cdd:COG1177    83 PAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 181 EAAATLGANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLDEFSVSFFTIGSD-NTLPIVIWGQMRAGVSPTVNAISALMVL 259
Cdd:COG1177   163 EAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGvTTLPVYIYSMIRRGISPEINALSTLLIL 242

                         250
                  ....*....|...
gi 2511838193 260 ATILLIYVVHRLS 272
Cdd:COG1177   243 LSLLLLLLAERLR 255
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 21-272 3.79e-68

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 211.89  E-value: 3.79e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  21 RLSTFAFSVYTAILLAFLFAPIAIVVLFSFDAKGLAAFPFEAPTTEWYVSVARDPIMRKAAVNSVFVALGTTICCILIGT 100
Cdd:COG1177     3 RLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGT 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 101 SAAFAIARFRFRRASIFAGLMALPLLLPHLLLGISLLSFFTSLGIGLSVWTAIIGHVLITLPFLVFTLTSRIGSLDPQIP 180
Cdd:COG1177    83 PAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 181 EAAATLGANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLDEFSVSFFTIGSD-NTLPIVIWGQMRAGVSPTVNAISALMVL 259
Cdd:COG1177   163 EAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGvTTLPVYIYSMIRRGISPEINALSTLLIL 242

                         250
                  ....*....|...
gi 2511838193 260 ATILLIYVVHRLS 272
Cdd:COG1177   243 LSLLLLLLAERLR 255
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 30-271 3.00e-39

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 137.42  E-value: 3.00e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  30 YTAILLAFLFAPIAIVVLFSFDAK--GLAAFPFeapTTEWYVSVARDPIMRKAAVNSVFVALGTTICCILIGTSAAFAIA 107
Cdd:PRK09500    9 FMTLVYAYLYIPIIILIVNSFNSSrfGINWKGF---TTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALY 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 108 RFRFRRASIFAGLMALPLLLPHLLLGISLLSFFTSLGIGLSVWTAIIGHVLITLPFLVFTLTSRIGSLDPQIPEAAATLG 187
Cdd:PRK09500   86 RYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 188 ANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLDEFSVSFFTIG-SDNTLPIVIWGQMRAGVSPTVNAISALMVLATILLIY 266
Cdd:PRK09500  166 ASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGpSYEILPLKIYSMVKVGVSPEVNALATILLVLSLVLVI 245


                  ....*
gi 2511838193 267 VVHRL 271
Cdd:PRK09500  246 LSQLL 250
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 38-271 1.32e-14

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 72.00  E-value: 1.32e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  38 LFAPIAIVVLFSFdAKGLAAFpfeapttewyVSVARDPIMRKAAVNSVFVALGTTICCILIGTSAAFAIARFRFRRASIF 117
Cdd:TIGR00969  30 LILPVAALFVQAF-SKGLGQF----------WQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLL 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 118 AGLMALPLLLPHLLLGISLLSFFTSLG------------IGLSVWTAIIGHVLITLPFLVFTLTSRIGSLDPQIPEAAAT 185
Cdd:TIGR00969  99 DALIDLPFALSPVVAGLTLALLYGSNGwlgswlasfgiqIIFTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAAT 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 186 LGANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLDEF-SVSFFT---IGSDNTLPIVIWGQMRAGVSPTVNAISALMVLAT 261
Cdd:TIGR00969 179 LGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFgAVVVVSgniPGKTLTLPLLIEERLEQYDYPGAYVIAAVLLLVS 258

                         250
                  ....*....|
gi 2511838193 262 ILLIYVVHRL 271
Cdd:TIGR00969 259 LVTLFLINAL 268
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 81-265 7.61e-09

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 54.21  E-value: 7.61e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  81 AVNSVFVALGTTICCILIGTSAAFAIARFRFRRASIFAGLMALPLLLPHLLLGISLLSFFTSLGIGL----SVWTAIIGH 156
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGilpgLGLPALILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 157 VLITLPFLVFTLTSRIGSLDPQIPEAAATLGANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLDEFSVSFFTIGSDNTLPI 236
Cdd:cd06261    81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                         170       180
                  ....*....|....*....|....*....
gi 2511838193 237 VIWGQMRAGVSPTVNAISALMVLATILLI 265
Cdd:cd06261   161 TGLLLIFAILFPGDLGVAAAVALILLLLS 189
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 134-274 2.83e-04

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 40.75  E-value: 2.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 134 ISLLSFFTSLGIGLSVWTAIIGHVLITLPFLVFTLTSRIGSLDPQIPEAAATLGANPAQAFYRVTLPLLRSAMIGAMLLV 213
Cdd:pfam00528  37 ILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALA 116

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2511838193 214 IAWSLDEFSVSFFtIGSDNTLPIVIWGQMRAGVSPTVNAISALMVLATILLIYVVHRLSDI 274
Cdd:pfam00528 117 FGGALGGAVLLEF-LGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRL 176
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 21-272 3.79e-68

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 211.89  E-value: 3.79e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  21 RLSTFAFSVYTAILLAFLFAPIAIVVLFSFDAKGLAAFPFEAPTTEWYVSVARDPIMRKAAVNSVFVALGTTICCILIGT 100
Cdd:COG1177     3 RLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGT 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 101 SAAFAIARFRFRRASIFAGLMALPLLLPHLLLGISLLSFFTSLGIGLSVWTAIIGHVLITLPFLVFTLTSRIGSLDPQIP 180
Cdd:COG1177    83 PAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 181 EAAATLGANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLDEFSVSFFTIGSD-NTLPIVIWGQMRAGVSPTVNAISALMVL 259
Cdd:COG1177   163 EAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGvTTLPVYIYSMIRRGISPEINALSTLLIL 242

                         250
                  ....*....|...
gi 2511838193 260 ATILLIYVVHRLS 272
Cdd:COG1177   243 LSLLLLLLAERLR 255
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 30-271 3.00e-39

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 137.42  E-value: 3.00e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  30 YTAILLAFLFAPIAIVVLFSFDAK--GLAAFPFeapTTEWYVSVARDPIMRKAAVNSVFVALGTTICCILIGTSAAFAIA 107
Cdd:PRK09500    9 FMTLVYAYLYIPIIILIVNSFNSSrfGINWKGF---TTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALY 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 108 RFRFRRASIFAGLMALPLLLPHLLLGISLLSFFTSLGIGLSVWTAIIGHVLITLPFLVFTLTSRIGSLDPQIPEAAATLG 187
Cdd:PRK09500   86 RYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 188 ANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLDEFSVSFFTIG-SDNTLPIVIWGQMRAGVSPTVNAISALMVLATILLIY 266
Cdd:PRK09500  166 ASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGpSYEILPLKIYSMVKVGVSPEVNALATILLVLSLVLVI 245


                  ....*
gi 2511838193 267 VVHRL 271
Cdd:PRK09500  246 LSQLL 250
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
20-272 1.67e-28

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 113.72  E-value: 1.67e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  20 GRLSTFAFSVYTAILLAFLFAPIAIVVLFSFdakglAAFPFEAPTTEWYVSVARDPIMRKAAVNSVFVALGTTICCILIG 99
Cdd:COG1178   284 GRWRWLALALCLLLVLLGLLLPLLALLLWSL-----TKALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLA 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 100 TSAAFAIARFRFRRASIFAGLMALPLLLPHLLLGISLLSFFTS---LGIGLSVWTAIIGHVLITLPFLVFTLTSRIGSLD 176
Cdd:COG1178   359 LLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRplpLLLYGTLAILVLAYVVRFLPFALRSLEAALAQID 438

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 177 PQIPEAAATLGANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLDEFSVSFFTIGSD-NTLPIVIWGQMRAGVSPTVNAISA 255
Cdd:COG1178   439 PSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGfETLAVLIYQLASSGRYGEAAALAL 518

                         250
                  ....*....|....*..
gi 2511838193 256 LMVLATILLIYVVHRLS 272
Cdd:COG1178   519 LLVLVSLLPVLLLERLL 535
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 30-275 2.96e-28

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 109.47  E-value: 2.96e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  30 YTAILLAFLFAPIAIVVLFSFDAKGLAAFPFEAPTTEWYVSVARDPIMRKAAVNSVFVALGTTICCILIGTSAAFAIARF 109
Cdd:COG1176    18 ALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARA 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 110 RFRRASIFAGLMalplllphlllgisLLSFFTS----------------------LGIGL---------SVWTAIIGHVL 158
Cdd:COG1176    98 PPRWRNLLLLLV--------------ILPFWTSflvrtyawivllgrngllnsllLALGLideplrllyTEFAVVIGLVY 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 159 ITLPFLVFTLTSRIGSLDPQIPEAAATLGANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLDEFSVSFFTIGSDN-TLPIV 237
Cdd:COG1176   164 VYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVlMIGNL 243

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 2511838193 238 IWGQMRAGVS-PTVNAISALMVLATILLIYVVHRLSDIR 275
Cdd:COG1176   244 IYQQFLSALNwPLAAALAVVLLLIVLLVLLLYLRLLRRR 282
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 12-268 1.35e-24

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 99.40  E-value: 1.35e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  12 TQGSTMNQGRLSTFAFSVYTAILLAFLFAPIAIVVLFSF-DAKGLAAFP----FEAPTTEWYVSVARDPIMRKAAVNSVF 86
Cdd:COG0395     2 SATARRRRRRLGRILLYLLLILLALLFLFPLYWMVVTSFkPPAEIFSGPpsllPSEFTLENYRAAFTDGPFGRYLLNSLI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  87 VALGTTICCILIGTSAAFAIARFRFRRASIFAGLMALPLLLPHLLLGISLLSFFTSLGIGLSVWTAIIGHVLITLPFLVF 166
Cdd:COG0395    82 VAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGIF 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 167 TLTSRIGSLDPQIPEAAATLGANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLDEFSVSFFTIGSDN--TLPIVIWgQMRA 244
Cdd:COG0395   162 LLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDlrTLPVGLA-SFQG 240

                         250       260
                  ....*....|....*....|....*.
gi 2511838193 245 GVSPTVNAISALMVLATI--LLIYVV 268
Cdd:COG0395   241 QYGTDWGLLMAAAVIATLpvLILFLF 266
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 32-271 3.12e-24

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 98.39  E-value: 3.12e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  32 AILLAFLFAPIAIVVLFSFDAKGLAAFpFEAPTTEWYVSVARDPIMRKAAVNSVFVALGTTICCILIGTSAAFAIARF-R 110
Cdd:PRK10592   17 VLGFTFLYAPMLMLVIYSFNSSKLVTV-WAGWSTRWYGELFRDDAMMSAVGLSLTIAACAATAAAILGTIAAVVMVRFgR 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 111 FRRASIFAGLMALPLLLPHLLLGISLLSFFTSLG--IG-------LSVWTAiigHVLITLPFLVFTLTSRIGSLDPQIPE 181
Cdd:PRK10592   96 FRGSNGFAFMITAPLVMPDVITGLSLLLLFVALAhaIGwpadrgmLTIWLA---HVTFCTAYVAVVISSRLRELDRSIEE 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 182 AAATLGANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLDEFSVSFFTIGSD-NTLPIVIWGQMRAGVSPTVNAISALMVLA 260
Cdd:PRK10592  173 AAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGPGaTTLPMLVFSSVRMGVNPEINALATLILGV 252

                         250
                  ....*....|.
gi 2511838193 261 TILLIYVVHRL 271
Cdd:PRK10592  253 VGIVGFIAWYL 263
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
16-271 2.21e-23

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 99.08  E-value: 2.21e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  16 TMNQGRLSTFAFSVYTAILLAFLFAPIAIVVLFSFdakglaafpfeAPTTEWYVSVARDPIMRKAAVNSVFVALGTTICC 95
Cdd:COG1178     2 STRPRRRPRLLLLLLALLLALLVLLPLLALLLRAF-----------TDGLANFWALLSDPYLWRALGNTLLLALLVTLLS 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  96 ILIGTSAAFAIARFRFRRASIFAGLMALPLLLPHLLLGISLLSFF-----------TSLGIGL----SVWTAIIGHVLIT 160
Cdd:COG1178    71 LLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFgpngllntllrALFGLEPpdiyGLGGIILVLVLFN 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 161 LPFLVFTLTSRIGSLDPQIPEAAATLGANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLDEFSVSFFTIGSDNTLPIVIWG 240
Cdd:COG1178   151 YPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGGGYTTLTTAIYQ 230

                         250       260       270
                  ....*....|....*....|....*....|..
gi 2511838193 241 QMRAGVS-PTVNAISALMVLATILLIYVVHRL 271
Cdd:COG1178   231 AWLGDFDlGAAAALALVLLLLVLLLLLLERRL 262
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 17-271 1.42e-19

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 85.57  E-value: 1.42e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  17 MNQGRLSTFAFSVYT--AILLAFLFAPIAIVVLFSFDAkGLAAFpfeapttewyVSVARDPIMRKAAVNSVFVALGTTIC 94
Cdd:COG0555     1 MSRRVLPGFGLTLGLtlLYLSLIVLLPLAALVLKAAGL-GWAEF----------WAVLTSPRVLAALKLSLGTALIAALI 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  95 CILIGTSAAFAIARFRFRRASIFAGLMALPLLLPHLLLGISLLSFFTSLG--------IGLSV----WTAIIGHVLITLP 162
Cdd:COG0555    70 NLVFGLPLAWVLVRYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGwlgqllapLGIKVaftpLGIVLAQTFVSLP 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 163 FLVFTLTSRIGSLDPQIPEAAATLGANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLDEF-SVSFF---TIGSDNTLPIVI 238
Cdd:COG0555   150 FVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFgAVIFIagnLPMKTEILPLLI 229

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2511838193 239 WGQMRAGVSPTVNAISALMVLATILLIYVVHRL 271
Cdd:COG0555   230 YLKLEEGDYAGATAIALVLLLISFLLLLLINLL 262
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 74-272 9.70e-18

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 79.71  E-value: 9.70e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  74 DPIMRKAAVNSVFVALGTTICCILIGTSAAFAIARFRFRRASIFAGLMALPLLLPHLLLGISLLSFF-----------TS 142
Cdd:COG4149     2 SPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFgrngplgqlleEL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 143 LGIGL--SVWTAIIGHVLITLPFLVFTLTSRIGSLDPQIPEAAATLGANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLDE 220
Cdd:COG4149    82 FGISLvfTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALGE 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2511838193 221 FSVSfFTIGSD-----NTLPIVIWGQMRAGVSPTVNAISALMVLATILLIYVVHRLS 272
Cdd:COG4149   162 FGAT-LMFAGNipgktQTLPLAIYDAVEAGDYAAAHALSLILLAISFVVLLLLNLLN 217
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 38-271 1.32e-14

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 72.00  E-value: 1.32e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  38 LFAPIAIVVLFSFdAKGLAAFpfeapttewyVSVARDPIMRKAAVNSVFVALGTTICCILIGTSAAFAIARFRFRRASIF 117
Cdd:TIGR00969  30 LILPVAALFVQAF-SKGLGQF----------WQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLL 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 118 AGLMALPLLLPHLLLGISLLSFFTSLG------------IGLSVWTAIIGHVLITLPFLVFTLTSRIGSLDPQIPEAAAT 185
Cdd:TIGR00969  99 DALIDLPFALSPVVAGLTLALLYGSNGwlgswlasfgiqIIFTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAAT 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 186 LGANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLDEF-SVSFFT---IGSDNTLPIVIWGQMRAGVSPTVNAISALMVLAT 261
Cdd:TIGR00969 179 LGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFgAVVVVSgniPGKTLTLPLLIEERLEQYDYPGAYVIAAVLLLVS 258

                         250
                  ....*....|
gi 2511838193 262 ILLIYVVHRL 271
Cdd:TIGR00969 259 LVTLFLINAL 268
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 17-270 8.15e-14

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 69.72  E-value: 8.15e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  17 MNQGRLSTFAFSVYTAILLAFLFAPIAIVVLFSF---DAKGLAAFPFeapTTEWYVSVArDPIMRKAAVNSVFVALGTTI 93
Cdd:PRK09497    2 KNTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFltrDDANFVKMVF---TLDNYTRLL-DPLYAEVLLHSLNMALIATL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  94 CCILIGTSAAFAIARF--RFRRASIFAGLMALPLLLPHLLLGISLL--------SFFTSLG-------IGLSVWTAIIGH 156
Cdd:PRK09497   78 ACLVLGYPFAWFLAKLphKVRPLLLFLLIVPFWTNSLIRIYGLKIFlstkgylnEFLLWLGvidtpirIMFTESAVIIGL 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 157 VLITLPFLVFTLTSRIGSLDPQIPEAAATLGANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLDEFSVSFFTIGSDNTL-P 235
Cdd:PRK09497  158 VYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLLGGAKNLLiG 237

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 2511838193 236 IVIWGQ-MRAGVSPTVNAISALMVLATILLIYVVHR 270
Cdd:PRK09497  238 NVIKSQfLNIRDWPFGAATSITLTIVMGLMLLVYYR 273
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 84-267 3.58e-13

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 66.88  E-value: 3.58e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  84 SVFVALGTTICCILIGTSAAFAIARFRFRRASIFAGLMALPLLLPHLLLGISLLSFFTSLG--------IGLSV---WTA 152
Cdd:TIGR02141   3 SLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGpigkllelFGISLvftFTG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 153 -IIGHVLITLPFLVFTLTSRIGSLDPQIPEAAATLGANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLDEFSVSFFTIGS- 230
Cdd:TIGR02141  83 aVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFAGNi 162

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2511838193 231 ---DNTLPIVIWGQMRAGVSPTVNAISALMVLATILLIYV 267
Cdd:TIGR02141 163 pgeTQTIPLAIYDAVESDYELAHQLSLVLLAISLIVLLLV 202
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
32-272 9.46e-11

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 60.92  E-value: 9.46e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  32 AILLAFLFAPIAIVVLFSFDAKGLAAFPFEAPTTEWYVSVARDPIMRKAAVNSVFVALGTTICCILIGTSAAFAIAR-FR 110
Cdd:COG1175    29 LLLLVFVLYPLLYTLYLSFTDWNLLGPPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNRkLR 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 111 FR---RASIFAGLMALPLLLPHLLLGI-----SLL-SFFTSLGIG---------LSVWTAIIGHVLITLPFLVFTLTSRI 172
Cdd:COG1175   109 GRgffRTLFFLPWVISPVVVALIWKWLfnpdyGLLnALLGALGLEpinwlgdpsLALPAVIIVTVWKGTGFNMLIFLAGL 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 173 GSLDPQIPEAAATLGANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLDEFSVSFFTIG-----SDNTLPIVIW----GQMR 243
Cdd:COG1175   189 QSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGggpgnSTTTLVLYIYqtafQQFD 268

                         250       260
                  ....*....|....*....|....*....
gi 2511838193 244 AGVSptvNAISALMVLATILLIYVVHRLS 272
Cdd:COG1175   269 FGYA---SAIAVVLFLIILVLTLLQLRLL 294
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 32-240 8.11e-10

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 58.24  E-value: 8.11e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  32 AILLAFLFAPIAIVVLFSFDAKGLAA---FPFEAPTTEWYVSVARDPIMRKAAVNSVFVALGTTICCILIGTSAAFAIAR 108
Cdd:COG3833    23 IILAIIALFPILWVVSASFNPGGSLYsssLIPENFTLENYKKLFTETPFLRWFLNSLIVAVVTAIISVFLAALAAYAFSR 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 109 FRF--RRASIFAGLMALPLLLPHLLLGISLLsfFTSLGIGLSVWTAIIGHVLITLPFLVFTLTSRIGSLDPQIPEAAATL 186
Cdd:COG3833   103 FRFkgRKAGLLALLLLQMFPAFLALVALYLL--LSALGLLNTLLGLILVYLGGAIPFNTWLMKGYFDTIPKELDEAAKID 180

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2511838193 187 GANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLDEFSVSFFTIGSDN--TLPIVIWG 240
Cdd:COG3833   181 GASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVLLRSPEnyTLAVGLYS 236
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 81-265 7.61e-09

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 54.21  E-value: 7.61e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  81 AVNSVFVALGTTICCILIGTSAAFAIARFRFRRASIFAGLMALPLLLPHLLLGISLLSFFTSLGIGL----SVWTAIIGH 156
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGilpgLGLPALILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 157 VLITLPFLVFTLTSRIGSLDPQIPEAAATLGANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLDEFSVSFFTIGSDNTLPI 236
Cdd:cd06261    81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                         170       180
                  ....*....|....*....|....*....
gi 2511838193 237 VIWGQMRAGVSPTVNAISALMVLATILLI 265
Cdd:cd06261   161 TGLLLIFAILFPGDLGVAAAVALILLLLS 189
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 11-270 1.17e-08

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 55.10  E-value: 1.17e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  11 WTQGSTMNQGRLSTFAFSvYTAILLAFLFaPIAIVVLFSFdAKGLAAFPFEAPTTEW-------------YVSVARDPIM 77
Cdd:PRK10683   19 WLARLQMKHGRKLVIALP-YLWLILLFLL-PFLIVFKISL-AEMARAIPPYTDLMEWadgqlsitlnlgnFLQLTDDPLY 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  78 RKAAVNSVFVALGTTICCILIGTSAAFAIARFRFRRASIFAGLMALPLLLPHLLLGISLLSFFTSLGI--GLSVWTAIIG 155
Cdd:PRK10683   96 FDAYLQSLQVAAISTLCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVlnNFLLWLGVID 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 156 HVLITL---------------PFLVFTLTSRIGSLDPQIPEAAATLGANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLDE 220
Cdd:PRK10683  176 QPLTILhtnlavyigivyaylPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGE 255

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2511838193 221 FSVSFFTIGSDNTL-PIVIWGQMRAGVS-PTVNAISALMVLATILLIYVVHR 270
Cdd:PRK10683  256 FVIPELLGGPDSIMiGRVLWQEFFNNRDwPVASAVAIIMLLLLIVPIMWFHK 307
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 32-270 3.31e-08

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 53.92  E-value: 3.31e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  32 AILLAFLFAPIAIVVLFSF-----DAKGLAAFpfeapttewyVSVARDPIMRKAAVNSVFVALGTTICCILIGTSAAFAI 106
Cdd:TIGR03262  12 LALLLFLLLPLLALLTKSVydsdgDFIGLANF----------AEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYAL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 107 ARFRFRRASIFAGLMALPLLLPHLLLGISLLSFFTSLGI------GLSV---WTAIIGHVLITLPFLVFTLTSRIGSLDP 177
Cdd:TIGR03262  82 TRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLlkgllgGFSIygfWGIVIGEVFYTFPHALMILVTALSLADG 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 178 QIPEAAATLGANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLDEFSVSFFTIGSDNTLPIVIWGQMRAGVSPTVNAISALM 257
Cdd:TIGR03262 162 RLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGDYNVLATDIYKQVIGQQNFPMGAVVGVL 241

                         250
                  ....*....|...
gi 2511838193 258 VLATILLIYVVHR 270
Cdd:TIGR03262 242 LLLPALLAFGIDR 254
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 32-271 1.50e-07

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 51.54  E-value: 1.50e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  32 AILLAFLFAPIAIVVLFSFDAKGlaafpfeAPTTEWYVSVARDPIMRKAAVNSVFVALGTTICCILIGTSAAFAIARFRF 111
Cdd:PRK15050   33 LVLAPLVVYPLVRVVLQSLTGEH-------GLGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVLGVLLALVLAFVPF 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 112 RRASIFAGLMALPLLLPHLLLGISLLSFFTSLG---IGL---------------SVWTAIIGHVLITLPFLVFTLTSRIG 173
Cdd:PRK15050  106 PGASLVGRFIDTFVAFPSFLITLAFTFLYGSAGsvnIALqrlfgleappldflySPGGVILAEITFYTPFVVRPLLAAFA 185

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 174 SLDPQIPEAAATLGANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLDEFSVSFFTIGSD-NTLPIVIWGQMRAGVSPTVNA 252
Cdd:PRK15050  186 QLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAKDvVTLPVLIYSKAIVDFDYPTAC 265

                         250
                  ....*....|....*....
gi 2511838193 253 ISALMVLATILLIYVVHRL 271
Cdd:PRK15050  266 AIAVVNLALSLGLYALYRR 284
COG4132 COG4132
ABC-type uncharacterized transport system, permease component [General function prediction ...
 32-271 1.60e-07

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443307 [Multi-domain]  Cd Length: 286  Bit Score: 51.34  E-value: 1.60e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  32 AILLAFLFAPIAIVVLFSF-DAKGlaafpfeAPTTEWYVSVArDPIMRKAAVNSVFVALGTTICCILIGTSAAFAIARF- 109
Cdd:COG4132    23 LFVLLFLLLPTVWVVIGAFqDDDG-------GFTLANYAELT-SPFYLQAFWNSIWLSLASALIGAVIGLLLAYALRRGg 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 110 --RFRRA-SIFAGLMALPLLLPHLLLGISLLS-------FFTSLGIGL-------SVWTAIIGHVLITLPFLVFTLTSRI 172
Cdd:COG4132    95 pgWLRRAvLAFSGVASNFAGVPLAFAFIATLGrnglvtlLLKQLGIDLydgfnlySFWGLILVYLYFQIPLMVLLLYPAL 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 173 GSLDPQIPEAAATLGANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLDEF-SVSFFTIGSDNTLPIVIWGQMRAGVSPTVN 251
Cdd:COG4132   175 DGLRREWREAAALLGASRWQYWRRVALPVLAPSLLGTFLLLFANAFGAYaTAYALTGGNYNLVPIRIGALISGDVLLDPN 254

                         250       260
                  ....*....|....*....|...
gi 2511838193 252 ---AISALMVLATILLIYVVHRL 271
Cdd:COG4132   255 lgaALALGMIVIMALVMALYQWL 277
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
160-271 2.19e-07

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 50.91  E-value: 2.19e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 160 TLPFLVFTLTSRIGSLDPQIPEAAATLGANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLDEFSVSFFTIGS----DNTLP 235
Cdd:PRK10971  151 SIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAGNiawkTEVTS 230

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2511838193 236 IVIWGQMRAGVSPTVNAISALMVLATILLIYVVHRL 271
Cdd:PRK10971  231 LMIFVRLQEFDYPAASAIASVILAASLLLLFSINTL 266
modB PRK09421
molybdate ABC transporter permease subunit;
150-221 1.11e-06

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 48.38  E-value: 1.11e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2511838193 150 WT-AIIGHVLITLPFLVFTLTSRIGSLDPQIPEAAATLGANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLDEF 221
Cdd:PRK09421   92 WRgAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEF 164
cysT CHL00187
sulfate transport protein; Provisional
 140-221 6.54e-06

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 46.16  E-value: 6.54e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 140 FTSLGIGLSVwtaiighVLITLPFLVFTLTSRIGSLDPQIPEAAATLGANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLD 219
Cdd:CHL00187  135 FTKLGVLLAM-------IFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIG 207


                  ..
gi 2511838193 220 EF 221
Cdd:CHL00187  208 EY 209
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 139-225 1.03e-05

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 46.40  E-value: 1.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 139 FFTSLGIGLSVWTAIIGHVLITLPFLVFTLTSRIGSLDPQIPEAAATLGANPAQAFYRVTLPLLRSAmigamlLVIAWSL 218
Cdd:COG4135   416 LLLRLGLDGTWLAVIWAHLVFVLPYVFLSLAGPWRALDPRYAQVAASLGASPWRVFWRVKLPLLLRP------ILTAAAV 489


                  ....*..
gi 2511838193 219 DeFSVSF 225
Cdd:COG4135   490 G-FAVSV 495
malG PRK10998
maltose ABC transporter permease MalG;
83-216 1.68e-05

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 45.47  E-value: 1.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  83 NSVFVALGTTICCILIGTSAAFAIARFRFRRASIFAGLMALPLLLPHLLLGISLLSFFTSLG-----IGLSVWTAIIGHV 157
Cdd:PRK10998   87 NSVKVAGITAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDRLGqyipfIGLNTHGGVIFAY 166

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2511838193 158 LITLPFLVFTLTSRIGSLDPQIPEAAATLGANPAQAFYRVTLPLlrSAMIGAMLLVIAW 216
Cdd:PRK10998  167 LGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPL--SVPILAVVFILSF 223
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
73-238 7.69e-05

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 43.20  E-value: 7.69e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193  73 RDPIMRKAAVNSVFVALGTTICCILIGTSAAFAIARFRFRRASIFAGLMALPLLLPHLLLGISLLSFFTSLGI------- 145
Cdd:PRK11602   58 ADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPlggwlde 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 146 -GLSVWTAIIGHVLITL----PFLVFTLTSRIGSLDPQIPEAAATLGANPAQAFYRVTLPLLRSAMIGAMLLVIAWSLDE 220
Cdd:PRK11602  138 hNLQLMFSWPGMVLVTIfvtcPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGE 217

                         170       180
                  ....*....|....*....|..
gi 2511838193 221 FS----VSFFTIGSDNTLPIVI 238
Cdd:PRK11602  218 FGavsvVSGSIRGETLSLPLQI 239
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 134-274 2.83e-04

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 40.75  E-value: 2.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2511838193 134 ISLLSFFTSLGIGLSVWTAIIGHVLITLPFLVFTLTSRIGSLDPQIPEAAATLGANPAQAFYRVTLPLLRSAMIGAMLLV 213
Cdd:pfam00528  37 ILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALA 116

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2511838193 214 IAWSLDEFSVSFFtIGSDNTLPIVIWGQMRAGVSPTVNAISALMVLATILLIYVVHRLSDI 274
Cdd:pfam00528 117 FGGALGGAVLLEF-LGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRL 176
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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