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Conserved domains on  [gi|2502262300|ref|WP_281665268|]
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AraC family transcriptional regulator [Paraburkholderia fungorum]

Protein Classification

helix-turn-helix transcriptional regulator( domain architecture ID 11454547)

helix-turn-helix (HTH) transcriptional regulator containing an AraC family DNA-binding HTH domain controls the expression of genes with diverse biological functions including metabolism, stress response, and virulence

CATH:  1.10.10.1310
Gene Ontology:  GO:0003700|GO:0043565|GO:0006355
PubMed:  9409145|8831795|15808743|2644244
SCOP:  4000332

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
208-289 4.30e-23

helix_turn_helix, arabinose operon control protein;


:

Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 90.30  E-value: 4.30e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502262300  208 GLTIDSLASVAGMSRSNFCERFHALVGKSPVRYRNEWRLSVARDMLTKGDARVGEVGRSVGYESEAAFSRAYKAYFGHAP 287
Cdd:smart00342   1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTP 80


                   ..
gi 2502262300  288 RE 289
Cdd:smart00342  81 SE 82
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
38-289 1.36e-21

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


:

Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 91.38  E-value: 1.36e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502262300  38 RVFSSMLLPFAQLDTSAQAAHAYAVMEGAVRISGNEVDACEIRSGELLLLPRGPGSLRIAALDQPANVVVCHFWFDPASQ 117
Cdd:COG2207     3 LLILLLLLLLLLALLLLLLLLLLLLILLLLALVLLLLLLALLLLLLLLLGLLGGLLLLLLLLLLLGLLLLLLLLLLGLLL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502262300 118 PELLLTLPVMIHLRKAETCDWLPHIMQFLLHEADNDEAGSALMVSRMIDLVVVRALRAWVHHGHASnwlggLADQRIARA 197
Cdd:COG2207    83 LALLALLLLVGLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLALLRALELLLLLLLLLLLLL-----LLLLLLLLL 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502262300 198 LKAIHEQSPRGLTIDSLASVAGMSRSNFCERFHALVGKSPVRYRNEWRLSVARDMLTKGDARVGEVGRSVGYESEAAFSR 277
Cdd:COG2207   158 LLLLLLLLLLLLTLEELARELGLSPRTLSRLFKEETGTSPKQYLRELRLERAKRLLAETDLSISEIAYELGFSSQSHFSR 237

                         250
                  ....*....|..
gi 2502262300 278 AYKAYFGHAPRE 289
Cdd:COG2207   238 AFKKRFGVTPSE 249
 
Name Accession Description Interval E-value
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
208-289 4.30e-23

helix_turn_helix, arabinose operon control protein;


Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 90.30  E-value: 4.30e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502262300  208 GLTIDSLASVAGMSRSNFCERFHALVGKSPVRYRNEWRLSVARDMLTKGDARVGEVGRSVGYESEAAFSRAYKAYFGHAP 287
Cdd:smart00342   1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTP 80


                   ..
gi 2502262300  288 RE 289
Cdd:smart00342  81 SE 82
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
38-289 1.36e-21

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 91.38  E-value: 1.36e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502262300  38 RVFSSMLLPFAQLDTSAQAAHAYAVMEGAVRISGNEVDACEIRSGELLLLPRGPGSLRIAALDQPANVVVCHFWFDPASQ 117
Cdd:COG2207     3 LLILLLLLLLLLALLLLLLLLLLLLILLLLALVLLLLLLALLLLLLLLLGLLGGLLLLLLLLLLLGLLLLLLLLLLGLLL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502262300 118 PELLLTLPVMIHLRKAETCDWLPHIMQFLLHEADNDEAGSALMVSRMIDLVVVRALRAWVHHGHASnwlggLADQRIARA 197
Cdd:COG2207    83 LALLALLLLVGLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLALLRALELLLLLLLLLLLLL-----LLLLLLLLL 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502262300 198 LKAIHEQSPRGLTIDSLASVAGMSRSNFCERFHALVGKSPVRYRNEWRLSVARDMLTKGDARVGEVGRSVGYESEAAFSR 277
Cdd:COG2207   158 LLLLLLLLLLLLTLEELARELGLSPRTLSRLFKEETGTSPKQYLRELRLERAKRLLAETDLSISEIAYELGFSSQSHFSR 237

                         250
                  ....*....|..
gi 2502262300 278 AYKAYFGHAPRE 289
Cdd:COG2207   238 AFKKRFGVTPSE 249
Cupin_6 pfam12852
Cupin; This is a family of bacterial and eukaryotic proteins that belong to the Cupin ...
 23-178 6.70e-21

Cupin; This is a family of bacterial and eukaryotic proteins that belong to the Cupin superfamily. Some of the proteins in this family are annotated as being members of the AraC family of transcription factors, in which case this domain corresponds to the ligand binding domain.


Pssm-ID: 432833  Cd Length: 184  Bit Score: 87.75  E-value: 6.70e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502262300  23 DLLSQVLARMRMTGDRVFSSMLL-PFAQLDTSAQAAHAYAVMEGAVRISGNEVDACEIRSGELLLLPRG----------- 90
Cdd:pfam12852   1 DVLSDLLAGLRLRGAVFFRGVLRaPWALRFPAGDGATFHVVLRGSCWLRLPGGEPVRLRAGDLVLLPRGdphvladdpgt 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502262300  91 ---------------PGSLRIAALDQPANVVVCHFWFDPASQPELLLTLPVMIHLRKAETCD-WLPHIMQFLLHEADNDE 154
Cdd:pfam12852  81 ppvpvdplsraprpgEGEPVVGGGGAATVLLCGAFQFDGEAANPLLAALPPVLHVPADEAAApWLRALLELLAAELAEDR 160

                         170       180
                  ....*....|....*....|....
gi 2502262300 155 AGSALMVSRMIDLVVVRALRAWVH 178
Cdd:pfam12852 161 PGSQAVLDRLLDLLLVQALRAWLA 184
GlxA COG4977
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ...
 190-289 2.01e-19

Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];


Pssm-ID: 444002 [Multi-domain]  Cd Length: 318  Bit Score: 86.36  E-value: 2.01e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502262300 190 ADQRIARALKAIHEQSPRGLTIDSLASVAGMSRSNFCERFHALVGKSPVRYRNEWRLSVARDMLTKGDARVGEVGRSVGY 269
Cdd:COG4977   208 RDPRLARAQAWMEANLEEPLSVDELARRAGMSPRTLERRFRAATGTTPARYLQRLRLERARRLLETTDLSIEEIAAACGF 287

                          90       100
                  ....*....|....*....|
gi 2502262300 270 ESEAAFSRAYKAYFGHAPRE 289
Cdd:COG4977   288 GSASHFRRAFRRRFGVSPSA 307
HTH_18 pfam12833
Helix-turn-helix domain;
214-289 1.05e-17

Helix-turn-helix domain;


Pssm-ID: 432818 [Multi-domain]  Cd Length: 81  Bit Score: 76.09  E-value: 1.05e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2502262300 214 LASVAGMSRSNFCERFHALVGKSPVRYRNEWRLSVARDMLTK-GDARVGEVGRSVGYESEAAFSRAYKAYFGHAPRE 289
Cdd:pfam12833   1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLLEdTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSE 77
ftrA PRK09393
transcriptional activator FtrA; Provisional
 191-287 2.22e-12

transcriptional activator FtrA; Provisional


Pssm-ID: 181818 [Multi-domain]  Cd Length: 322  Bit Score: 66.14  E-value: 2.22e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502262300 191 DQRIARALKAIHEQSPRGLTIDSLASVAGMSRSNFCERFHALVGKSPVRYRNEWRLSVARDMLTKGDARVGEVGRSVGYE 270
Cdd:PRK09393  217 SDRLGPLIDWMRAHLAEPHTVASLAARAAMSPRTFLRRFEAATGMTPAEWLLRERLARARDLLESSALSIDQIAERAGFG 296

                          90
                  ....*....|....*..
gi 2502262300 271 SEAAFSRAYKAYFGHAP 287
Cdd:PRK09393  297 SEESLRHHFRRRAATSP 313
 
Name Accession Description Interval E-value
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
208-289 4.30e-23

helix_turn_helix, arabinose operon control protein;


Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 90.30  E-value: 4.30e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502262300  208 GLTIDSLASVAGMSRSNFCERFHALVGKSPVRYRNEWRLSVARDMLTKGDARVGEVGRSVGYESEAAFSRAYKAYFGHAP 287
Cdd:smart00342   1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTP 80


                   ..
gi 2502262300  288 RE 289
Cdd:smart00342  81 SE 82
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
38-289 1.36e-21

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 91.38  E-value: 1.36e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502262300  38 RVFSSMLLPFAQLDTSAQAAHAYAVMEGAVRISGNEVDACEIRSGELLLLPRGPGSLRIAALDQPANVVVCHFWFDPASQ 117
Cdd:COG2207     3 LLILLLLLLLLLALLLLLLLLLLLLILLLLALVLLLLLLALLLLLLLLLGLLGGLLLLLLLLLLLGLLLLLLLLLLGLLL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502262300 118 PELLLTLPVMIHLRKAETCDWLPHIMQFLLHEADNDEAGSALMVSRMIDLVVVRALRAWVHHGHASnwlggLADQRIARA 197
Cdd:COG2207    83 LALLALLLLVGLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLALLRALELLLLLLLLLLLLL-----LLLLLLLLL 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502262300 198 LKAIHEQSPRGLTIDSLASVAGMSRSNFCERFHALVGKSPVRYRNEWRLSVARDMLTKGDARVGEVGRSVGYESEAAFSR 277
Cdd:COG2207   158 LLLLLLLLLLLLTLEELARELGLSPRTLSRLFKEETGTSPKQYLRELRLERAKRLLAETDLSISEIAYELGFSSQSHFSR 237

                         250
                  ....*....|..
gi 2502262300 278 AYKAYFGHAPRE 289
Cdd:COG2207   238 AFKKRFGVTPSE 249
Cupin_6 pfam12852
Cupin; This is a family of bacterial and eukaryotic proteins that belong to the Cupin ...
 23-178 6.70e-21

Cupin; This is a family of bacterial and eukaryotic proteins that belong to the Cupin superfamily. Some of the proteins in this family are annotated as being members of the AraC family of transcription factors, in which case this domain corresponds to the ligand binding domain.


Pssm-ID: 432833  Cd Length: 184  Bit Score: 87.75  E-value: 6.70e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502262300  23 DLLSQVLARMRMTGDRVFSSMLL-PFAQLDTSAQAAHAYAVMEGAVRISGNEVDACEIRSGELLLLPRG----------- 90
Cdd:pfam12852   1 DVLSDLLAGLRLRGAVFFRGVLRaPWALRFPAGDGATFHVVLRGSCWLRLPGGEPVRLRAGDLVLLPRGdphvladdpgt 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502262300  91 ---------------PGSLRIAALDQPANVVVCHFWFDPASQPELLLTLPVMIHLRKAETCD-WLPHIMQFLLHEADNDE 154
Cdd:pfam12852  81 ppvpvdplsraprpgEGEPVVGGGGAATVLLCGAFQFDGEAANPLLAALPPVLHVPADEAAApWLRALLELLAAELAEDR 160

                         170       180
                  ....*....|....*....|....
gi 2502262300 155 AGSALMVSRMIDLVVVRALRAWVH 178
Cdd:pfam12852 161 PGSQAVLDRLLDLLLVQALRAWLA 184
GlxA COG4977
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ...
 190-289 2.01e-19

Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];


Pssm-ID: 444002 [Multi-domain]  Cd Length: 318  Bit Score: 86.36  E-value: 2.01e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502262300 190 ADQRIARALKAIHEQSPRGLTIDSLASVAGMSRSNFCERFHALVGKSPVRYRNEWRLSVARDMLTKGDARVGEVGRSVGY 269
Cdd:COG4977   208 RDPRLARAQAWMEANLEEPLSVDELARRAGMSPRTLERRFRAATGTTPARYLQRLRLERARRLLETTDLSIEEIAAACGF 287

                          90       100
                  ....*....|....*....|
gi 2502262300 270 ESEAAFSRAYKAYFGHAPRE 289
Cdd:COG4977   288 GSASHFRRAFRRRFGVSPSA 307
HTH_18 pfam12833
Helix-turn-helix domain;
214-289 1.05e-17

Helix-turn-helix domain;


Pssm-ID: 432818 [Multi-domain]  Cd Length: 81  Bit Score: 76.09  E-value: 1.05e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2502262300 214 LASVAGMSRSNFCERFHALVGKSPVRYRNEWRLSVARDMLTK-GDARVGEVGRSVGYESEAAFSRAYKAYFGHAPRE 289
Cdd:pfam12833   1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLLEdTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSE 77
ftrA PRK09393
transcriptional activator FtrA; Provisional
 191-287 2.22e-12

transcriptional activator FtrA; Provisional


Pssm-ID: 181818 [Multi-domain]  Cd Length: 322  Bit Score: 66.14  E-value: 2.22e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502262300 191 DQRIARALKAIHEQSPRGLTIDSLASVAGMSRSNFCERFHALVGKSPVRYRNEWRLSVARDMLTKGDARVGEVGRSVGYE 270
Cdd:PRK09393  217 SDRLGPLIDWMRAHLAEPHTVASLAARAAMSPRTFLRRFEAATGMTPAEWLLRERLARARDLLESSALSIDQIAERAGFG 296

                          90
                  ....*....|....*..
gi 2502262300 271 SEAAFSRAYKAYFGHAP 287
Cdd:PRK09393  297 SEESLRHHFRRRAATSP 313
AdaA COG2169
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), ...
 190-289 2.90e-10

Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair];


Pssm-ID: 441772 [Multi-domain]  Cd Length: 358  Bit Score: 60.07  E-value: 2.90e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502262300 190 ADQRIARALKAIHEQSPRGLTIDSLASVAGMSRSNFCERFHALVGKSPVRYRNEWRLSVARDMLTKGDaRVGEVGRSVGY 269
Cdd:COG2169    82 RADLVARACRLIEAGAEDRPSLEDLAARLGLSPRHLRRLFKAHTGVTPKAYARARRLLRARQLLQTGL-SVTDAAYAAGF 160

                          90       100
                  ....*....|....*....|
gi 2502262300 270 ESEAAFSRAYKAYFGHAPRE 289
Cdd:COG2169   161 GSLSRFYEAFKKLLGMTPSA 180
PRK10572 PRK10572
arabinose operon transcriptional regulator AraC;
191-289 1.27e-07

arabinose operon transcriptional regulator AraC;


Pssm-ID: 236717 [Multi-domain]  Cd Length: 290  Bit Score: 51.90  E-value: 1.27e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502262300 191 DQRIARALKAIHEQSPRGLTIDSLASVAGMSRSNFCERFHALVGKSPVRYRNEWRLSVARDMLTKGDARVGEVGRSVGYE 270
Cdd:PRK10572  182 DPRVREACQYISDHLASEFDIESVAQHVCLSPSRLAHLFRQQLGISVLRWREDQRISRAKLLLQTTRMPIATIGRNVGYD 261

                          90
                  ....*....|....*....
gi 2502262300 271 SEAAFSRAYKAYFGHAPRE 289
Cdd:PRK10572  262 DQLYFSRVFKKCTGASPSE 280
HTH_AraC pfam00165
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ...
 201-242 1.73e-07

Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added.


Pssm-ID: 425497 [Multi-domain]  Cd Length: 42  Bit Score: 46.76  E-value: 1.73e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2502262300 201 IHEQSPRGLTIDSLASVAGMSRSNFCERFHALVGKSPVRYRN 242
Cdd:pfam00165   1 LRENLSTNLTIADIADELGFSRSYFSRLFKKYTGVTPSQYRH 42
PRK10219 PRK10219
superoxide response transcriptional regulator SoxS;
201-287 7.20e-04

superoxide response transcriptional regulator SoxS;


Pssm-ID: 182314 [Multi-domain]  Cd Length: 107  Bit Score: 38.37  E-value: 7.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502262300 201 IHEQSPRGLTIDSLASVAGMSRSNFCERFHALVGKSPVRYRNEWRLSVARDMLTKGDARVGEVGRSVGYESEAAFSRAYK 280
Cdd:PRK10219   14 IDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVFR 93


                  ....*..
gi 2502262300 281 AYFGHAP 287
Cdd:PRK10219   94 RQFDRTP 100
PRK15340 PRK15340
AraC family transcriptional regulator InvF;
204-288 2.40e-03

AraC family transcriptional regulator InvF;


Pssm-ID: 185240  Cd Length: 216  Bit Score: 38.42  E-value: 2.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2502262300 204 QSPRGLTIDSLASVAGMSRSNF---CERfhALVGKSPVRYRNeWRLsvARDML--TKGDARVGEVGRSVGYESEAAFSRA 278
Cdd:PRK15340  121 QSTSGNTMRMLGEDYGVSYTHFrrlCSR--ALGGKAKSELRN-WRM--AQSLLnsVEGHENITQLAVNHGYSSPSHFSSE 195

                          90
                  ....*....|
gi 2502262300 279 YKAYFGHAPR 288
Cdd:PRK15340  196 IKELIGVSPR 205
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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