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Conserved domains on  [gi|2495721247|ref|WP_279960208|]
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MULTISPECIES: type II secretion system secretin GspD [unclassified Acinetobacter]

Protein Classification

type II secretion system protein D( domain architecture ID 1004622)

type II secretion system protein D is involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins

CATH:  3.30.1370.120|3.55.50.30
Gene Ontology:  GO:0015628|GO:0015627|GO:0009279
PubMed:  28067918|30767847

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
type_II_gspD super family cl37135
type II secretion system protein D; In Gram-negative bacteria, proteins that have first ...
 34-655 4.71e-166

type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]


The actual alignment was detected with superfamily member TIGR02517:

Pssm-ID: 274175 [Multi-domain]  Cd Length: 594  Bit Score: 491.52  E-value: 4.71e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247  34 INLRDADLTAFINEVADITGKNFAVDPRVRGNVTVISNKALNKDEVYDLFLGVLNVNGVVALPSGNTVKLV-PDSNAKNS 112
Cdd:TIGR02517   1 LNFVDADISTVVKAISDLTGKNFIIDPRVKGKITIISPRPVTEDEAYQLFLSALRAQGFAVVPEGNGYKIVvPRAAAKLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 113 GIPYDARNRAG--GDQIVTRVIWLENTNPNDLIPALRPLMPQFAHLAAVAGTNALIVSDRATNIYQLESIIRNLDGTGQN 190
Cdd:TIGR02517  81 PGPIEDGPAPGvgGDQFVTRVFPLRNISASELVPVLRPLVSPNGDVAAYPPTNTIVVTDYASNINRVARIIQQLDVDGAG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 191 DIEAITLQSSQAEEIIGLLETMSATGTSKDFIGSRVRVIADNRTNRILIKGDPDSRKRLRHTIEMLDVPSADRlGGLKVF 270
Cdd:TIGR02517 161 SVEVIPLKNASAVDIADVLNKLLGEGGKTDGGGKLSVIAPDRRNNILIRAGSPEALERIKKLISQLDVPASEG-GNVRVY 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 271 RLKYASAKNLAEILQGLVTGqsvsssstsnnanksssinnLTSNSQGQTGNSSSGVNSSINLNSGFNNNQNNAGitsfng 350
Cdd:TIGR02517 240 YLRNADAEELAKTLQGVFGG--------------------GGNEPGSSSSPGLGGAVNPGGSQSAQAASSASGG------ 293

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 351 nGVSIIADGTQNALVVKADPQLMREIEAAIQQLDIRRQQVLIEAAIIEVSGNDADQLGIQWALGDLSSGVGLMSFSNVGA 430
Cdd:TIGR02517 294 -SVSGSADKATNSLIITASPQDYKNIRAVIKQLDVRRAQVLVEAIIVEVSLDDALELGVQWLIAGTGGGVNFSTGSPNSG 372

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 431 SLAS-IAAGYASAGASGAAAAIAGDASKGNGATFGVGNFensrkayGALIQALKTNTKSNFLSTPSIVTMDNEEAYIVVG 509
Cdd:TIGR02517 373 SLLGaSASAISLGSAGIGLLVTSSSTTSGVGGTGGGPNL-------GVLLNALKQDTGFNVLSTPSLLTLDNQEAEINVG 445

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 510 QNVPFVTGSVSTGTSGT-VNPYTTVERKDVGVTLKVVPHIGENGTVRLEVEQEVSDVQNNK--GQATDLVTNKRAIKTAV 586
Cdd:TIGR02517 446 QEVPVLTGSYNTGTGGTnANPFNTYQRKDVGIKLKVTPQINEGGTVRLEIYQEVSSVAPTTvgSAASGPTFNKREIKTVV 525

                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2495721247 587 LAEHGQTVVLGGLIADNTALSRQGVPGLSDIPYLGRLFRADSRSNEKRNLLVFIHPTIVGDADDVRRLS 655
Cdd:TIGR02517 526 LVDNGDTVVLGGLIQDKTSESVTKVPLLGDIPVLGWLFRSTTTERTKTNLMVFITPRIIRDPEDARALT 594
 
Name Accession Description Interval E-value
type_II_gspD TIGR02517
type II secretion system protein D; In Gram-negative bacteria, proteins that have first ...
 34-655 4.71e-166

type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274175 [Multi-domain]  Cd Length: 594  Bit Score: 491.52  E-value: 4.71e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247  34 INLRDADLTAFINEVADITGKNFAVDPRVRGNVTVISNKALNKDEVYDLFLGVLNVNGVVALPSGNTVKLV-PDSNAKNS 112
Cdd:TIGR02517   1 LNFVDADISTVVKAISDLTGKNFIIDPRVKGKITIISPRPVTEDEAYQLFLSALRAQGFAVVPEGNGYKIVvPRAAAKLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 113 GIPYDARNRAG--GDQIVTRVIWLENTNPNDLIPALRPLMPQFAHLAAVAGTNALIVSDRATNIYQLESIIRNLDGTGQN 190
Cdd:TIGR02517  81 PGPIEDGPAPGvgGDQFVTRVFPLRNISASELVPVLRPLVSPNGDVAAYPPTNTIVVTDYASNINRVARIIQQLDVDGAG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 191 DIEAITLQSSQAEEIIGLLETMSATGTSKDFIGSRVRVIADNRTNRILIKGDPDSRKRLRHTIEMLDVPSADRlGGLKVF 270
Cdd:TIGR02517 161 SVEVIPLKNASAVDIADVLNKLLGEGGKTDGGGKLSVIAPDRRNNILIRAGSPEALERIKKLISQLDVPASEG-GNVRVY 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 271 RLKYASAKNLAEILQGLVTGqsvsssstsnnanksssinnLTSNSQGQTGNSSSGVNSSINLNSGFNNNQNNAGitsfng 350
Cdd:TIGR02517 240 YLRNADAEELAKTLQGVFGG--------------------GGNEPGSSSSPGLGGAVNPGGSQSAQAASSASGG------ 293

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 351 nGVSIIADGTQNALVVKADPQLMREIEAAIQQLDIRRQQVLIEAAIIEVSGNDADQLGIQWALGDLSSGVGLMSFSNVGA 430
Cdd:TIGR02517 294 -SVSGSADKATNSLIITASPQDYKNIRAVIKQLDVRRAQVLVEAIIVEVSLDDALELGVQWLIAGTGGGVNFSTGSPNSG 372

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 431 SLAS-IAAGYASAGASGAAAAIAGDASKGNGATFGVGNFensrkayGALIQALKTNTKSNFLSTPSIVTMDNEEAYIVVG 509
Cdd:TIGR02517 373 SLLGaSASAISLGSAGIGLLVTSSSTTSGVGGTGGGPNL-------GVLLNALKQDTGFNVLSTPSLLTLDNQEAEINVG 445

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 510 QNVPFVTGSVSTGTSGT-VNPYTTVERKDVGVTLKVVPHIGENGTVRLEVEQEVSDVQNNK--GQATDLVTNKRAIKTAV 586
Cdd:TIGR02517 446 QEVPVLTGSYNTGTGGTnANPFNTYQRKDVGIKLKVTPQINEGGTVRLEIYQEVSSVAPTTvgSAASGPTFNKREIKTVV 525

                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2495721247 587 LAEHGQTVVLGGLIADNTALSRQGVPGLSDIPYLGRLFRADSRSNEKRNLLVFIHPTIVGDADDVRRLS 655
Cdd:TIGR02517 526 LVDNGDTVVLGGLIQDKTSESVTKVPLLGDIPVLGWLFRSTTTERTKTNLMVFITPRIIRDPEDARALT 594
PulD COG1450
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ...
 349-666 5.48e-97

Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441059 [Multi-domain]  Cd Length: 333  Bit Score: 303.77  E-value: 5.48e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 349 NGNGVSIIADGTQNALVVKADPQLMREIEAAIQQLDIRRQQVLIEAAIIEVSGNDADQLGIQWALgdLSSGVGLMSFSNV 428
Cdd:COG1450    40 GAAGVSVVADPRTNSLIVRATPEQLREIEELIEQLDVPRRQVLIEAKIVEVSLSDLRELGIDWSA--LGGNGGGVNFGGT 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 429 GaSLASIAAGYASagasgaaaaiagdaskGNGATFGVGNFENsrkaYGALIQALKTNTKSNFLSTPSIVTMDNEEAYIVV 508
Cdd:COG1450   118 G-SLGSLAAAGSL----------------GGGLNLGLLGGGN----FGALLNALESNGDANVLSSPSILTLNNQEAVIKV 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 509 GQNVPFVTGSVSTGTSGtvNPYTTVERKDVGVTLKVVPHIGENGTVRLEVEQEVSDV--QNNKGQATDLVTNKRAIKTAV 586
Cdd:COG1450   177 GQTVPYVTGSTTTSSTG--NPTTTIEYVDVGITLKVTPQINEDGTVTLDINPEVSSVtgSTTGGGNGLPTINKREISTTV 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 587 LAEHGQTVVLGGLIADNTALSRQGVPGLSDIPYLGRLFRADSRSNEKRNLLVFIHPTIVGDADDVRRLSqQRYNQLYSLQ 666
Cdd:COG1450   255 RVKDGQTVVLGGLIRDEESESESKVPLLGDIPLLGRLFRSTSKSKEKTELVIFITPTIIRDGEDAQALT-EEYDRLRALQ 333
IV PHA00019
phage assembly protein
 347-646 1.07e-58

phage assembly protein


Pssm-ID: 222772 [Multi-domain]  Cd Length: 428  Bit Score: 205.43  E-value: 1.07e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 347 SFNGNGVSIIADGTQNALVVKADPQLMREIEAAIQQLDIRRQQVLIEAAIIEVSGNDAdqlgiqwalGDLSSGVGLMSFS 426
Cdd:PHA00019  156 SNGAPGGSVTDLPGTNSLVVSGSASQLPALADFISAIDVPRRQVLIEALIFETSLGDG---------VDLSFAAGLASGG 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 427 NVGASLASIAAGYASAGAsgaaaaiagdaskgnGATFGVgnFENSrkAYGALIQALKTNTKSNFLSTPSIVTMDNEEAYI 506
Cdd:PHA00019  227 KVAGGFNTARLTTVLSSA---------------GGSFGI--FNGN--VLGLSVKALENSSNSRVLSRPRILTLSGQSGYI 287

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 507 VVGQNVPFVTGSVSTGTSGTVNPYTTVERKDVGVTLKVVPHIGENGTVRLEVEQEvSDVQNNKGQATDLVTNKRAIKTAV 586
Cdd:PHA00019  288 SVGQNVPFVTGRVTGEAANVNNPFQTIERKDVGVSLEVTPVVMGDGQLVLDIDTK-ADSLSDSTIASDIITNQRSLQTTV 366

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 587 LAEHGQTVVLGGLIADNTALSRQGVPGLSDIPYLGRLFRADSRSNEKRNLLVFIHPTIVG 646
Cdd:PHA00019  367 QVKDGQTLLLGGLISSNNTDGDSSVPFLSKIPLIGWLFRSKSDSNEQRTLYVLLTARVIK 426
Secretin pfam00263
Bacterial type II and III secretion system protein;
481-645 5.03e-52

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 177.71  E-value: 5.03e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 481 ALKTNTKSNFLSTPSIVTMDNEEAYIVVGQNVPFVTGSVSTGTSGTvnpytTVERKDVGVTLKVVPHIGENGTVRLEVEQ 560
Cdd:pfam00263   1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPVPTTSTTGGTTTT-----TVEFKDAGLSLKVTPQVTPDGTITLKINP 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 561 EVSDVQNNkGQATDLVTNKRAIKTAVLAEHGQTVVLGGLIADNTALSRQGVPGLSDIPYLGRLFRADSRSNEKRNLLVFI 640
Cdd:pfam00263  76 EVSSPDGN-GGNGVPTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKSKEKTELLIFI 154


                  ....*
gi 2495721247 641 HPTIV 645
Cdd:pfam00263 155 TPRIV 159
 
Name Accession Description Interval E-value
type_II_gspD TIGR02517
type II secretion system protein D; In Gram-negative bacteria, proteins that have first ...
 34-655 4.71e-166

type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274175 [Multi-domain]  Cd Length: 594  Bit Score: 491.52  E-value: 4.71e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247  34 INLRDADLTAFINEVADITGKNFAVDPRVRGNVTVISNKALNKDEVYDLFLGVLNVNGVVALPSGNTVKLV-PDSNAKNS 112
Cdd:TIGR02517   1 LNFVDADISTVVKAISDLTGKNFIIDPRVKGKITIISPRPVTEDEAYQLFLSALRAQGFAVVPEGNGYKIVvPRAAAKLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 113 GIPYDARNRAG--GDQIVTRVIWLENTNPNDLIPALRPLMPQFAHLAAVAGTNALIVSDRATNIYQLESIIRNLDGTGQN 190
Cdd:TIGR02517  81 PGPIEDGPAPGvgGDQFVTRVFPLRNISASELVPVLRPLVSPNGDVAAYPPTNTIVVTDYASNINRVARIIQQLDVDGAG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 191 DIEAITLQSSQAEEIIGLLETMSATGTSKDFIGSRVRVIADNRTNRILIKGDPDSRKRLRHTIEMLDVPSADRlGGLKVF 270
Cdd:TIGR02517 161 SVEVIPLKNASAVDIADVLNKLLGEGGKTDGGGKLSVIAPDRRNNILIRAGSPEALERIKKLISQLDVPASEG-GNVRVY 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 271 RLKYASAKNLAEILQGLVTGqsvsssstsnnanksssinnLTSNSQGQTGNSSSGVNSSINLNSGFNNNQNNAGitsfng 350
Cdd:TIGR02517 240 YLRNADAEELAKTLQGVFGG--------------------GGNEPGSSSSPGLGGAVNPGGSQSAQAASSASGG------ 293

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 351 nGVSIIADGTQNALVVKADPQLMREIEAAIQQLDIRRQQVLIEAAIIEVSGNDADQLGIQWALGDLSSGVGLMSFSNVGA 430
Cdd:TIGR02517 294 -SVSGSADKATNSLIITASPQDYKNIRAVIKQLDVRRAQVLVEAIIVEVSLDDALELGVQWLIAGTGGGVNFSTGSPNSG 372

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 431 SLAS-IAAGYASAGASGAAAAIAGDASKGNGATFGVGNFensrkayGALIQALKTNTKSNFLSTPSIVTMDNEEAYIVVG 509
Cdd:TIGR02517 373 SLLGaSASAISLGSAGIGLLVTSSSTTSGVGGTGGGPNL-------GVLLNALKQDTGFNVLSTPSLLTLDNQEAEINVG 445

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 510 QNVPFVTGSVSTGTSGT-VNPYTTVERKDVGVTLKVVPHIGENGTVRLEVEQEVSDVQNNK--GQATDLVTNKRAIKTAV 586
Cdd:TIGR02517 446 QEVPVLTGSYNTGTGGTnANPFNTYQRKDVGIKLKVTPQINEGGTVRLEIYQEVSSVAPTTvgSAASGPTFNKREIKTVV 525

                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2495721247 587 LAEHGQTVVLGGLIADNTALSRQGVPGLSDIPYLGRLFRADSRSNEKRNLLVFIHPTIVGDADDVRRLS 655
Cdd:TIGR02517 526 LVDNGDTVVLGGLIQDKTSESVTKVPLLGDIPVLGWLFRSTTTERTKTNLMVFITPRIIRDPEDARALT 594
PulD COG1450
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ...
 349-666 5.48e-97

Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441059 [Multi-domain]  Cd Length: 333  Bit Score: 303.77  E-value: 5.48e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 349 NGNGVSIIADGTQNALVVKADPQLMREIEAAIQQLDIRRQQVLIEAAIIEVSGNDADQLGIQWALgdLSSGVGLMSFSNV 428
Cdd:COG1450    40 GAAGVSVVADPRTNSLIVRATPEQLREIEELIEQLDVPRRQVLIEAKIVEVSLSDLRELGIDWSA--LGGNGGGVNFGGT 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 429 GaSLASIAAGYASagasgaaaaiagdaskGNGATFGVGNFENsrkaYGALIQALKTNTKSNFLSTPSIVTMDNEEAYIVV 508
Cdd:COG1450   118 G-SLGSLAAAGSL----------------GGGLNLGLLGGGN----FGALLNALESNGDANVLSSPSILTLNNQEAVIKV 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 509 GQNVPFVTGSVSTGTSGtvNPYTTVERKDVGVTLKVVPHIGENGTVRLEVEQEVSDV--QNNKGQATDLVTNKRAIKTAV 586
Cdd:COG1450   177 GQTVPYVTGSTTTSSTG--NPTTTIEYVDVGITLKVTPQINEDGTVTLDINPEVSSVtgSTTGGGNGLPTINKREISTTV 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 587 LAEHGQTVVLGGLIADNTALSRQGVPGLSDIPYLGRLFRADSRSNEKRNLLVFIHPTIVGDADDVRRLSqQRYNQLYSLQ 666
Cdd:COG1450   255 RVKDGQTVVLGGLIRDEESESESKVPLLGDIPLLGRLFRSTSKSKEKTELVIFITPTIIRDGEDAQALT-EEYDRLRALQ 333
IV PHA00019
phage assembly protein
 347-646 1.07e-58

phage assembly protein


Pssm-ID: 222772 [Multi-domain]  Cd Length: 428  Bit Score: 205.43  E-value: 1.07e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 347 SFNGNGVSIIADGTQNALVVKADPQLMREIEAAIQQLDIRRQQVLIEAAIIEVSGNDAdqlgiqwalGDLSSGVGLMSFS 426
Cdd:PHA00019  156 SNGAPGGSVTDLPGTNSLVVSGSASQLPALADFISAIDVPRRQVLIEALIFETSLGDG---------VDLSFAAGLASGG 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 427 NVGASLASIAAGYASAGAsgaaaaiagdaskgnGATFGVgnFENSrkAYGALIQALKTNTKSNFLSTPSIVTMDNEEAYI 506
Cdd:PHA00019  227 KVAGGFNTARLTTVLSSA---------------GGSFGI--FNGN--VLGLSVKALENSSNSRVLSRPRILTLSGQSGYI 287

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 507 VVGQNVPFVTGSVSTGTSGTVNPYTTVERKDVGVTLKVVPHIGENGTVRLEVEQEvSDVQNNKGQATDLVTNKRAIKTAV 586
Cdd:PHA00019  288 SVGQNVPFVTGRVTGEAANVNNPFQTIERKDVGVSLEVTPVVMGDGQLVLDIDTK-ADSLSDSTIASDIITNQRSLQTTV 366

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 587 LAEHGQTVVLGGLIADNTALSRQGVPGLSDIPYLGRLFRADSRSNEKRNLLVFIHPTIVG 646
Cdd:PHA00019  367 QVKDGQTLLLGGLISSNNTDGDSSVPFLSKIPLIGWLFRSKSDSNEQRTLYVLLTARVIK 426
Secretin pfam00263
Bacterial type II and III secretion system protein;
481-645 5.03e-52

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 177.71  E-value: 5.03e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 481 ALKTNTKSNFLSTPSIVTMDNEEAYIVVGQNVPFVTGSVSTGTSGTvnpytTVERKDVGVTLKVVPHIGENGTVRLEVEQ 560
Cdd:pfam00263   1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPVPTTSTTGGTTTT-----TVEFKDAGLSLKVTPQVTPDGTITLKINP 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 561 EVSDVQNNkGQATDLVTNKRAIKTAVLAEHGQTVVLGGLIADNTALSRQGVPGLSDIPYLGRLFRADSRSNEKRNLLVFI 640
Cdd:pfam00263  76 EVSSPDGN-GGNGVPTINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRSTSKSKEKTELLIFI 154


                  ....*
gi 2495721247 641 HPTIV 645
Cdd:pfam00263 155 TPRIV 159
HofQ COG4796
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ...
 354-648 3.87e-50

Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443824 [Multi-domain]  Cd Length: 570  Bit Score: 185.06  E-value: 3.87e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 354 SIIADGTQNALVVKADPQLMREIEAAIQQLDIRRQQVLIEAAIIEVSGNDADQLGIQWALGDLSSGVGlmSFSNVGASLA 433
Cdd:COG4796   288 SVTVDERTNTLIVRDTPSKLEEIRRLIAKLDIPVRQVLIEARIVEASDSFSRELGVRWGGSGANGTGN--NRGGIGGSLN 365

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 434 SIAAGYASAGASGAAAAIAGDAskGNGATFGVGNFENSRkaygAL---IQALKTNTKSNFLSTPSIVTMDNEEAYIVVGQ 510
Cdd:COG4796   366 GTTAGTPLLPDGLNVNLPAANP--AGSLGLTLAKLGGGR----LLdleLSALEAEGKGEIISSPRVITADQQEASIEQGT 439

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 511 NVPFVTGSvstgTSGTvnpyTTVERKDVGVTLKVVPHIGENGTVRLEVEqeVSdvQNNKGQAT---DLVTNKRAIKTAVL 587
Cdd:COG4796   440 EIPYQESS----SSGA----TSVEFKEAVLSLEVTPQITPDGRIILDLD--VS--KDSPGETVaggVPAIDTKEIKTQVL 507

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2495721247 588 AEHGQTVVLGGLIADNTALSRQGVPGLSDIPYLGRLFRADSRSNEKRNLLVFIHPTIVGDA 648
Cdd:COG4796   508 VENGETVVLGGIYEQTESNSVDKVPFLGDIPLLGWLFKNTTKTDEKRELLIFITPRIVKDA 568
IV_pilus_PilQ TIGR02515
type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ ...
 345-646 6.41e-43

type IV pilus secretin (or competence protein) PilQ; A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure. [Cell envelope, Surface structures]


Pssm-ID: 274173 [Multi-domain]  Cd Length: 418  Bit Score: 160.94  E-value: 6.41e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 345 ITSFNGNGV-------SIIADGTQNALVVKADPQLMREIEAAIQQLDIRRQQVLIEAAIIEVSGNDADQLGIQWALGD-- 415
Cdd:TIGR02515 116 LTGVTGGSGgllsprgSVTVDPRTNTLIVTDTPENLARIRKLIAELDIPVRQVLIEARIVEATDSFSRELGVRWGITDkn 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 416 LSSGVGLMSFSNVGASLASIAAGYASAGASGAAAAIAGDASKGNGATFGVGNFENSRkAYGALIQALKTNTKSNFLSTPS 495
Cdd:TIGR02515 196 GNGNGTAGGIGGNNGTTATGAGGTGNPPFGDNLNVNLATATTAAGISFALGKIGSGR-LLDLELSALESEGKGEIISSPR 274

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 496 IVTMDNEEAYIVVGQNVPFVTGSVSTGTSgtvnpyttVERKDVGVTLKVVPHIGENGTVRLEVEqeVS-DVQNNKGQATD 574
Cdd:TIGR02515 275 VLTANNKEAKIEQGTEIPYQQTSSSGATS--------VEFKEAVLSLEVTPQITPDGRIIMDLL--VSkDSPGVVAQAGG 344

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2495721247 575 LV--TNKRAIKTAVLAEHGQTVVLGGLIADNTALSRQGVPGLSDIPYLGRLFRADSRSNEKRNLLVFIHPTIVG 646
Cdd:TIGR02515 345 GVpaIDKQEINTQVLVKNGETVVIGGIYEQTQTNSEDKVPLLGDIPVLGNLFKKTGKSDEKSELLIFITPRIVN 418
pilus_MshL TIGR02519
pilus (MSHA type) biogenesis protein MshL; Members of this family are predicted secretins, ...
 355-645 3.83e-38

pilus (MSHA type) biogenesis protein MshL; Members of this family are predicted secretins, that is, outer membrane pore proteins associated with delivery of proteins from periplasm to the outside of the cell. Related families include GspD of type II secretion (TIGR02517), the YscC/HrcC family from type III secretion (TIGR02516), and the PilQ secretin of type IV pilus formation (TIGR02515). Members of this family are found in gene clusters associated with MSHA (mannose-sensitive hemagglutinin) and related pili, and appear to be the secretin of this pilus system. [Cell envelope, Surface structures]


Pssm-ID: 274176 [Multi-domain]  Cd Length: 290  Bit Score: 143.68  E-value: 3.83e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 355 IIADGTQNALVVKADPQLMREIEAAIQQLDIR-RQQVLIEAAIIEVSGNDADQLGIQWA--LGDLSSGVGLMSFSNVGAS 431
Cdd:TIGR02519   1 YIINPEAGLLTVTATPAQIRRVEEYLESLQERiHRQVLIEAKILEVTLSDNHQQGIDWSnfNGSGLARYKALGAANSNDS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 432 LASIAAGYAsagasgaaaaiagdaskGNGATFGVGNFENSRKAYGALIQALKTNTKSNFLSTPSIVTMDNEEAYIVVGQN 511
Cdd:TIGR02519  81 SGNQFSSGL-----------------GFLDNIGLPTGVNSGFGFDSIINFLATFGDTKVLSNPKVMALNNQPAVISVGDN 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 512 VPFVTGSVSTGTSG----TVNPYTTVERKDVGVTLKVVPHIGENGTVRLEV--------EQEVSDVQNNKGQATDL-VTN 578
Cdd:TIGR02519 144 IRYVTEESSTGTTGgttsTASSDTRVDSVFSGIVLGVTPQISDDGKVILNVhpsisevkPQSIDLNPVGNGAEVALpEIS 223

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2495721247 579 KRAIKTAVLAEHGQTVVLGGLIADNTALSRQGVPGLSDIPYLGRLFRADSRSNEKRNLLVFIHPTIV 645
Cdd:TIGR02519 224 VKEMSSVLRVKDGDTVVLGGLIDKKKSNTKTGLPFLGDIPGLGYLFGYKSKSKKKTELVIIIRPSVV 290
type_III_yscC TIGR02516
type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to ...
 195-647 4.67e-35

type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to the type IV pilus secretin PilQ (TIGR02515) are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). The clade described by this model contains the outer membrane pore proteins of bacterial type III secretion systems, typified by YscC for animal pathogens and HrcC for plant pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274174 [Multi-domain]  Cd Length: 462  Bit Score: 139.05  E-value: 4.67e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 195 ITLQSSQAEEIIGLLETMSatgtskdFIGSRVRVIADNRTNRILIKGDPDSRKRLRHTIEMLDVPSADRLGG---LKVFR 271
Cdd:TIGR02516  80 ISPRPLSANELKKALRRSG-------LYDPRFPWRGDPEEGTVYVSGPPAYIDLVRNAATALEKQDQGRAGNrqvVKVFP 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 272 LKYASAKNLaeilqglvtgqsvsssstsnnanksssinnlTSNSQGQTGNSSSGVNSSINLNSGFNNNQNNAGitsfNGN 351
Cdd:TIGR02516 153 LKYASASDR-------------------------------TYNYRDQKVTIPGVATILRRLLSGGRQGAGGGR----ASA 197

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 352 GVSIIADGTQNALVVKADPQLMREIEAAIQQLDIRRQQVLIEAAIIEVSGNDADQLGIQW----ALGDLSSGVGLMSFSN 427
Cdd:TIGR02516 198 SPKISADPRTNAVLIRDRPERMAIYEQLIQQLDVPPRLIEISAWIIDIDASDLSQLGVDWqatlGAGDRQTGFNVSAGAG 277

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 428 VGASLASIAagyasagasgaaaaiagdaskgngaTFGVGNFEnsrkaygALIQALKTNTKSNFLSTPSIVTMDNEEAyiV 507
Cdd:TIGR02516 278 LGATGSSIV-------------------------TSDGDYFM-------ARVNALEQTGKAKIVSRPSVLTLENVQA--V 323

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 508 VGQNVPFVTgsvstgtsgTVNPYTTVERKDV--GVTLKVVPHIGENGTVRLEVEQEVsDVQ--NNKGQATDLVTN----K 579
Cdd:TIGR02516 324 LDNNRTFYV---------KVSGERVADLESVtaGTSLRVTPRVIGDEGAQRQIKLNV-DIEdgQQKTDGTSTVDAlpeiK 393

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2495721247 580 RA-IKTAVLAEHGQTVVLGGLIADNTALSRQGVPGLSDIPYLGRLFRADSRSNEKRNLLVFIHPTIVGD 647
Cdd:TIGR02516 394 RTeINTQARVGHGQSLLIGGYYRDESADSVDGIPLLGDIPLLGNLFRSTSKEKSRVVRLFLITPKIVRD 462
hofQ PRK13568
DNA uptake porin HofQ;
354-648 4.22e-32

DNA uptake porin HofQ;


Pssm-ID: 237430 [Multi-domain]  Cd Length: 381  Bit Score: 128.70  E-value: 4.22e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 354 SIIADGTQNALVVKADPQLMREIEAAIQQLDIRRQQVLIEAAIIEVSGNDADQLGIQWALGDLSSGVGLMSFSNVGASLA 433
Cdd:PRK13568  114 SVTADKRTNTLLIRDTPAALAQLKNWLIELDLPLQQVQLAAHIVTISSESLQELGVRWGMGEGKQGNTALRINDFNVNLP 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 434 SiaagyasagasgaaaaiagdaskGNGAtfGVGNFENSRKAyGALIQ----ALKTNTKSNFLSTPSIVTMDNEEAYIVVG 509
Cdd:PRK13568  194 L-----------------------PNPA--ASAGFHLARLG-GRLLDlelsALEQENQVDIIASPRLFTSHQQTASIKQG 247

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 510 QNVPFvtgSVSTGTSGTvnpyTTVERKDVGVTLKVVPHIGENG--TVRLEVEQEVSDVQNNKGQATDLVTNKRAIKTAVL 587
Cdd:PRK13568  248 TEIPY---TVSSGKSGS----TSIEFKEAVLGMEVTPKILRNGriTLKLKISQNMPGRTIKRGEGEMLAIDKQEIQTQVT 320

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2495721247 588 AEHGQTVVLGGLIADNTALSRQGVPGLSDIPYLGRLFRADSRSNEKRNLLVFIHPTIVGDA 648
Cdd:PRK13568  321 VKDGETIVLGGIFQQQKRQSVNKVPLLGDIPLLGALFRQDTQQQSRRELVIFITPKLISAD 381
CpaC COG4964
Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular ...
 387-645 1.58e-31

Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443990 [Multi-domain]  Cd Length: 456  Bit Score: 128.45  E-value: 1.58e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 387 RQQVLIEAAIIEVSGNDADQLGIQWALGDLSSGVglmSFSNVGASLASIAAGYASAGASgaaaaiagdaskgNGATFGVG 466
Cdd:COG4964   174 PQQVMLKVRVAEVSRSVLKQLGINWSGLGSSGGF---SFGLLTGGLLSGLLGGATAGAF-------------SGFGFGNA 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 467 NFensrkayGALIQALKTNTKSNFLSTPSIVTMDNEEAYIVVGQNVPFVTgSVSTGTsgtvnpyTTVERKDVGVTLKVVP 546
Cdd:COG4964   238 SI-------SATLDALEQNGLARVLAEPNLTALSGETASFLAGGEFPIPV-AQGDGT-------ITVEYKEFGVSLNFTP 302

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 547 HIGENGTVRLEVEQEVSDVQNNKGQATDLVT----NKRAIKTAVLAEHGQTVVLGGLIADNTALSRQGVPGLSDIPYLGR 622
Cdd:COG4964   303 TVLSNGRISLKVAPEVSELDPSNAVTLNGITipglTTRRAETTVELRSGQSFAIAGLLSSNTRQNVSKVPGLGDIPILGA 382

                         250       260
                  ....*....|....*....|...
gi 2495721247 623 LFRADSRSNEKRNLLVFIHPTIV 645
Cdd:COG4964   383 LFRSRSFQRNETELVIIVTPYLV 405
hofQ PRK10560
outer membrane porin HofQ; Provisional
 354-645 1.03e-28

outer membrane porin HofQ; Provisional


Pssm-ID: 182549 [Multi-domain]  Cd Length: 386  Bit Score: 118.77  E-value: 1.03e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 354 SIIADGTQNALVVKADPQLMREIEAAIQQLDIRRQQVLIEAAIIEVSGNDADQLGIQWALGDLSSGVGLMSFSNVGASLA 433
Cdd:PRK10560  119 SMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELAAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLS 198

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 434 SiaagyasagasgaaaaiagdaskgNGATFGVGnFeNSRKAYGALIQ----ALKTNTKSNFLSTPSIVTMDNEEAYIVVG 509
Cdd:PRK10560  199 V------------------------ATATTRVG-F-NIGRINGRLLDlelsALEQKQQLDIIASPRLLASHLQPASIKQG 252

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 510 QNVPFvtgSVSTGTSGTvnpyTTVERKDVGVTLKVVPHIGENGTVRLEVEqeVSdvQNNKGQATD------LVTNKRAIK 583
Cdd:PRK10560  253 SEIPY---QVSSGESGA----TSVEFKEAVLGMEVTPTVLQKGRIRLKLH--IS--QNVPGQVLQqadgevLAIDKQEIE 321

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2495721247 584 TAVLAEHGQTVVLGGLIADNTALSRQGVPGLSDIPYLGRLFRADSRSNEKRNLLVFIHPTIV 645
Cdd:PRK10560  322 TQVEVKSGETLALGGIFSRKNKSGQDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 383
PRK15346 PRK15346
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
357-629 1.06e-20

EscC/YscC/HrcC family type III secretion system outer membrane ring protein;


Pssm-ID: 237950 [Multi-domain]  Cd Length: 499  Bit Score: 96.30  E-value: 1.06e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 357 ADGTQNALVVKADPQLMREIEAAIQQLDIRRQQVLIEAAIIEVSGNDADQLGIQWAlGDLSSGVGLMSFSNVGASLASia 436
Cdd:PRK15346  240 ADPRQNAVIVRDRAANMAIYRSLITQLDQRPQMIEISVSIIDVDAGDINQLGIDWS-ASASLGGGKISFNSGFADGNA-- 316

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 437 agyasagasgaaaaiagdaskgNGATFGVGNFENsrkaYGALIQALKTNTKSNFLSTPSIVTMDNEEAyiVVGQNVPFVT 516
Cdd:PRK15346  317 ----------------------SGFSTVISNTGN----FMVRLNALEKNSKAKILSQPSVVTLNNIQA--VLDKNVTFYT 368

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 517 G----------SVSTGTsgtvnpyttverkdvgvTLKVVPH-IGENGTVRLEVEQEVSDVQ----NNKGQATDLVTNKRa 581
Cdd:PRK15346  369 KlqgekvakleSITTGS-----------------LLRVTPRlIDDNGTQKVMLNLNIQDGQqsatQSETDPLPEVQNSE- 430

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 2495721247 582 IKTAVLAEHGQTVVLGGLIADNTALSRQGVPGLSDIPYLGRLFRADSR 629
Cdd:PRK15346  431 IATQATLKAGQSLLLGGFIQDKQIESQNKIPLLGDIPLIGGLFRSTDK 478
PRK15339 PRK15339
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
345-638 3.29e-12

EscC/YscC/HrcC family type III secretion system outer membrane ring protein;


Pssm-ID: 237948 [Multi-domain]  Cd Length: 559  Bit Score: 69.80  E-value: 3.29e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 345 ITSFNGNGVSIIADGTQNALVVKADPQLMREIEAAIQQLDIRRQQVLIEAAIIEVSGNDADQLGIQWAlgdlssgvGLMS 424
Cdd:PRK15339  258 KQNAAAGDIKIIAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRHVELSLWIIDLDKSDLEQLGVNWS--------GSIT 329

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 425 FSN-VGASLASiaagyasagasgaaaaiagdaskGNGATFGVGNFEnsrkaygALIQALKTNTKSNFLSTPSIVTMDNEE 503
Cdd:PRK15339  330 IGDkLGVSLNQ-----------------------SSISTLDGSRFI-------AAVMALEQKKKANVVSRPVVLTQENIP 379

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 504 AyiVVGQNVPFVTGSVSTGTSgtvnpytTVERKDVGVTLKVVPHIGENGTVRL----EVEQEVSDVQNNKGQATDLVTNK 579
Cdd:PRK15339  380 A--IFDNNRTFYTKLVGERNV-------ALEHVTYGTMISVLPRFSADGQIEMsldiEDGNEKTPQSDTTTSVDALPEVG 450

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2495721247 580 RA-IKTAVLAEHGQTVVLGGLIADNTALSRQGVPGLSDIPYLGRLFR--ADSRSNEKRNLLV 638
Cdd:PRK15339  451 RTlISTIARVPQGKSLLIGGYTRDANTDEVQSIPFLGSLPLIGSLFRysSKNKSNIVRVFLI 512
Secretin_N pfam03958
Bacterial type II/III secretion system short domain; This is a short, often repeated, domain ...
 192-261 2.49e-09

Bacterial type II/III secretion system short domain; This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.


Pssm-ID: 461109 [Multi-domain]  Cd Length: 68  Bit Score: 54.14  E-value: 2.49e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 192 IEAITLQSSQAEEIIGLLETMSATGTSKDfigSRVRVIADNRTNRILIKGDPDSRKRLRHTIEMLDVPSA 261
Cdd:pfam03958   1 TRVIPLKYASAEDLASALRSLLGGSGLLS---KRGSVVADPRTNSLIVSGPPEYVELVRQLIKQLDVPRA 67
Secretin_N pfam03958
Bacterial type II/III secretion system short domain; This is a short, often repeated, domain ...
 129-185 3.93e-07

Bacterial type II/III secretion system short domain; This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.


Pssm-ID: 461109 [Multi-domain]  Cd Length: 68  Bit Score: 47.60  E-value: 3.93e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2495721247 129 TRVIWLENTNPNDLIPALRPLMPQFA------HLAAVAGTNALIVSDRATNIYQLESIIRNLD 185
Cdd:pfam03958   1 TRVIPLKYASAEDLASALRSLLGGSGllskrgSVVADPRTNSLIVSGPPEYVELVRQLIKQLD 63
Secretin_N pfam03958
Bacterial type II/III secretion system short domain; This is a short, often repeated, domain ...
 268-389 3.53e-06

Bacterial type II/III secretion system short domain; This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.


Pssm-ID: 461109 [Multi-domain]  Cd Length: 68  Bit Score: 44.90  E-value: 3.53e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2495721247 268 KVFRLKYASAKNLAEILQGLVTGQSVsssstsnnanksssinnltsnsqgqtgnsssgvnssinlnsgfnnnqnnagits 347
Cdd:pfam03958   2 RVIPLKYASAEDLASALRSLLGGSGL------------------------------------------------------ 27

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2495721247 348 fNGNGVSIIADGTQNALVVKADPQLMREIEAAIQQLDIRRQQ 389
Cdd:pfam03958  28 -LSKRGSVVADPRTNSLIVSGPPEYVELVRQLIKQLDVPRAQ 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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