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Conserved domains on  [gi|2495721155|ref|WP_279960122|]
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MULTISPECIES: RodZ domain-containing protein [unclassified Acinetobacter]

Protein Classification

helix-turn-helix domain-containing protein( domain architecture ID 10599706)

helix-turn-helix domain-containing protein with DUF4115 domain(s), may bind DNA and may function as a transcriptional regulator; with similarity to cytoskeleton protein RodZ, an inner membrane protein which functions in cell-shape control through regulation of the length of the long axis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HTH_25 pfam13413
Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.
 29-90 3.45e-19

Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.


:

Pssm-ID: 433187 [Multi-domain]  Cd Length: 62  Bit Score: 78.69  E-value: 3.45e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2495721155  29 YLRQIRIAQKKELEGIANVLNMPVKTLTALEQDDYKSLPEATFIKGYYRAYAKLLNADASAI 90
Cdd:pfam13413   1 RLRAAREARGLSLEDVAERTKIRPRYLEALEEDDFDALPEPVYARGFLRSYARALGLDPEEL 62
DUF4115 pfam13464
Domain of unknown function (DUF4115); This short domain is often found at the C-terminus of ...
 191-252 7.47e-13

Domain of unknown function (DUF4115); This short domain is often found at the C-terminus of proteins containing a helix-turn-helix domain. The function of this domain is unknown.


:

Pssm-ID: 433229 [Multi-domain]  Cd Length: 67  Bit Score: 62.20  E-value: 7.47e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2495721155 191 VLNFSRPTSVHIVDATGKVLATG--RQASTLTLSGESPFQIRLDDATAVSLALNQEQISLSPYT 252
Cdd:pfam13464   1 VLTFTGDSWVEVRDADGKVLFEGllKAGETRTVTGKPPLTLVLGNAGAVEVSVNGKPVDLLGYA 64
 
Name Accession Description Interval E-value
HTH_25 pfam13413
Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.
 29-90 3.45e-19

Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.


Pssm-ID: 433187 [Multi-domain]  Cd Length: 62  Bit Score: 78.69  E-value: 3.45e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2495721155  29 YLRQIRIAQKKELEGIANVLNMPVKTLTALEQDDYKSLPEATFIKGYYRAYAKLLNADASAI 90
Cdd:pfam13413   1 RLRAAREARGLSLEDVAERTKIRPRYLEALEEDDFDALPEPVYARGFLRSYARALGLDPEEL 62
RodZ COG1426
Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell ...
 24-91 9.97e-19

Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441035 [Multi-domain]  Cd Length: 71  Bit Score: 77.92  E-value: 9.97e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2495721155  24 QRPGEYLRQIRIAQKKELEGIANVLNMPVKTLTALEQDDYKSLPEATFIKGYYRAYAKLLNADASAII 91
Cdd:COG1426     4 ETIGELLRQAREAKGLSLEDVAERTKISVSYLEAIEEGDFDALPGPVYVRGFLRSYARALGLDPEELL 71
DUF4115 pfam13464
Domain of unknown function (DUF4115); This short domain is often found at the C-terminus of ...
 191-252 7.47e-13

Domain of unknown function (DUF4115); This short domain is often found at the C-terminus of proteins containing a helix-turn-helix domain. The function of this domain is unknown.


Pssm-ID: 433229 [Multi-domain]  Cd Length: 67  Bit Score: 62.20  E-value: 7.47e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2495721155 191 VLNFSRPTSVHIVDATGKVLATG--RQASTLTLSGESPFQIRLDDATAVSLALNQEQISLSPYT 252
Cdd:pfam13464   1 VLTFTGDSWVEVRDADGKVLFEGllKAGETRTVTGKPPLTLVLGNAGAVEVSVNGKPVDLLGYA 64
PRK10856 PRK10856
cytoskeleton protein RodZ;
184-249 1.64e-05

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 45.40  E-value: 1.64e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2495721155 184 ATTGDQLVLNFSRPTSVHIVDATGKVLATGRQAS--TLTLSGESPFQIRLDDATAVSLALNQEQISLS 249
Cdd:PRK10856  248 AADPNALVMNFTADCWLEVTDATGKKLFSGMQRKggNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLS 315
 
Name Accession Description Interval E-value
HTH_25 pfam13413
Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.
 29-90 3.45e-19

Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA.


Pssm-ID: 433187 [Multi-domain]  Cd Length: 62  Bit Score: 78.69  E-value: 3.45e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2495721155  29 YLRQIRIAQKKELEGIANVLNMPVKTLTALEQDDYKSLPEATFIKGYYRAYAKLLNADASAI 90
Cdd:pfam13413   1 RLRAAREARGLSLEDVAERTKIRPRYLEALEEDDFDALPEPVYARGFLRSYARALGLDPEEL 62
RodZ COG1426
Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell ...
 24-91 9.97e-19

Cytoskeletal protein RodZ, contains Xre-like HTH and DUF4115 domains [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441035 [Multi-domain]  Cd Length: 71  Bit Score: 77.92  E-value: 9.97e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2495721155  24 QRPGEYLRQIRIAQKKELEGIANVLNMPVKTLTALEQDDYKSLPEATFIKGYYRAYAKLLNADASAII 91
Cdd:COG1426     4 ETIGELLRQAREAKGLSLEDVAERTKISVSYLEAIEEGDFDALPGPVYVRGFLRSYARALGLDPEELL 71
DUF4115 pfam13464
Domain of unknown function (DUF4115); This short domain is often found at the C-terminus of ...
 191-252 7.47e-13

Domain of unknown function (DUF4115); This short domain is often found at the C-terminus of proteins containing a helix-turn-helix domain. The function of this domain is unknown.


Pssm-ID: 433229 [Multi-domain]  Cd Length: 67  Bit Score: 62.20  E-value: 7.47e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2495721155 191 VLNFSRPTSVHIVDATGKVLATG--RQASTLTLSGESPFQIRLDDATAVSLALNQEQISLSPYT 252
Cdd:pfam13464   1 VLTFTGDSWVEVRDADGKVLFEGllKAGETRTVTGKPPLTLVLGNAGAVEVSVNGKPVDLLGYA 64
PRK10856 PRK10856
cytoskeleton protein RodZ;
184-249 1.64e-05

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 45.40  E-value: 1.64e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2495721155 184 ATTGDQLVLNFSRPTSVHIVDATGKVLATGRQAS--TLTLSGESPFQIRLDDATAVSLALNQEQISLS 249
Cdd:PRK10856  248 AADPNALVMNFTADCWLEVTDATGKKLFSGMQRKggNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLS 315
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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