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Conserved domains on  [gi|2486361636|ref|WP_279077018|]
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DUF1266 domain-containing protein [Hafnia alvei]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF1266 super family cl14673
Protein of unknown function (DUF1266); This family consists of several hypothetical bacterial ...
1-335 6.63e-81

Protein of unknown function (DUF1266); This family consists of several hypothetical bacterial proteins of around 235 residues in length. Members of this family seem to be found exclusively in the Enterobacteria Salmonella typhimurium and Escherichia coli. The function of this family is unknown.


The actual alignment was detected with superfamily member PRK11380:

Pssm-ID: 472703  Cd Length: 353  Bit Score: 251.36  E-value: 6.63e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486361636   1 MKELLQNHPNWRGFPGVGNSLFGQN--HPGQEKLKRFRPQLKWKLRVLFGGACVGTALLLHFYFDAYITSPSEQHSTPLF 78
Cdd:PRK11380    2 KKVLLQNHPGSEKYPVNGWEIFNSNfeRMIKENKAMLLCKWGFYLTCVVAVMFVFAAITSNGLNERGYLLLITAGCSFLY 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486361636  79 LWGMTLIclllanaIIYRTLNGQAQQQRRYYQHAGLVPLAQSQRQALRLDIVQLYDCGFWSETLEYYPLAARVKDDDYHY 158
Cdd:PRK11380   82 LLIMLGL-------IVRAGFKKAKKEQLRYYQAKGIEPLSEEKRQALQLIAVYRFYHGQWSETLEFWPRKPRPGKDTFQY 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486361636 159 NLFPLASA---SSYLQLLDNDWGIATAQDYHEMLQRLHNGMH-SRLFAAQAVKKSEQLSHHLAELIGVTPKDVLDCLHSG 234
Cdd:PRK11380  155 HVLPFDSIdiiSKRRESLEDDWGIEDSEGYCALMEHLLSGDHgANTFKANMEEAPEQMIALLAKLAVFPSDYISDCANHS 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486361636 235 SGKRPPALLWGFDLWRGIVMSRNAFSAGLIDESQAWKDLLKTADFVYEIFASFDDFYTNYRLGNAFWSNNPKMAKF---- 310
Cdd:PRK11380  235 SGKSPAKLIWAADLSWMISLSRTAFQAGTIEEELAWHYILLASRKAHELFESEEDFYKNSRMGFLYWSNCCYRRKLtdae 314
                         330       340       350
                  ....*....|....*....|....*....|..
gi 2486361636 311 ------RLDQF-NGYKKYCRWPIAKLSWPSPS 335
Cdd:PRK11380  315 leacyrYDKQFwEHYSKKCRWPIANVPWGASS 346
 
Name Accession Description Interval E-value
PRK11380 PRK11380
hypothetical protein; Provisional
1-335 6.63e-81

hypothetical protein; Provisional


Pssm-ID: 236903  Cd Length: 353  Bit Score: 251.36  E-value: 6.63e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486361636   1 MKELLQNHPNWRGFPGVGNSLFGQN--HPGQEKLKRFRPQLKWKLRVLFGGACVGTALLLHFYFDAYITSPSEQHSTPLF 78
Cdd:PRK11380    2 KKVLLQNHPGSEKYPVNGWEIFNSNfeRMIKENKAMLLCKWGFYLTCVVAVMFVFAAITSNGLNERGYLLLITAGCSFLY 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486361636  79 LWGMTLIclllanaIIYRTLNGQAQQQRRYYQHAGLVPLAQSQRQALRLDIVQLYDCGFWSETLEYYPLAARVKDDDYHY 158
Cdd:PRK11380   82 LLIMLGL-------IVRAGFKKAKKEQLRYYQAKGIEPLSEEKRQALQLIAVYRFYHGQWSETLEFWPRKPRPGKDTFQY 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486361636 159 NLFPLASA---SSYLQLLDNDWGIATAQDYHEMLQRLHNGMH-SRLFAAQAVKKSEQLSHHLAELIGVTPKDVLDCLHSG 234
Cdd:PRK11380  155 HVLPFDSIdiiSKRRESLEDDWGIEDSEGYCALMEHLLSGDHgANTFKANMEEAPEQMIALLAKLAVFPSDYISDCANHS 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486361636 235 SGKRPPALLWGFDLWRGIVMSRNAFSAGLIDESQAWKDLLKTADFVYEIFASFDDFYTNYRLGNAFWSNNPKMAKF---- 310
Cdd:PRK11380  235 SGKSPAKLIWAADLSWMISLSRTAFQAGTIEEELAWHYILLASRKAHELFESEEDFYKNSRMGFLYWSNCCYRRKLtdae 314
                         330       340       350
                  ....*....|....*....|....*....|..
gi 2486361636 311 ------RLDQF-NGYKKYCRWPIAKLSWPSPS 335
Cdd:PRK11380  315 leacyrYDKQFwEHYSKKCRWPIANVPWGASS 346
DUF1266 pfam06889
Protein of unknown function (DUF1266); This family consists of several hypothetical bacterial ...
173-331 1.04e-16

Protein of unknown function (DUF1266); This family consists of several hypothetical bacterial proteins of around 235 residues in length. Members of this family seem to be found exclusively in the Enterobacteria Salmonella typhimurium and Escherichia coli. The function of this family is unknown.


Pssm-ID: 462031  Cd Length: 175  Bit Score: 77.10  E-value: 1.04e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486361636 173 LDNDWGIATAQDYHEMLQRLHNGMHSRLFAAQAVKKSEQLSHHLAELIGVTPKDVLDCLHSGSGKR----------PPAL 242
Cdd:pfam06889   2 LREWWGITDRESALETLEWLLEEGHRPEFDELLLRLRALSEAERREELAELEDDEKDYARAQGGLPdfvqryyerlGEEG 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486361636 243 LWGFDLWRGIVMSRNAFSAGLIDESQAWKDLLKTADFVYEIFASFDDFYTNYRLGNAFWS-----NNPKMAKFRLDQFNG 317
Cdd:pfam06889  82 ILAWDLGRAVNLARWGYQAGYLSEEEAWEYILKAARLAQRYYSSWEEFAASYLLGRLFWQgegedDPASDYDEMWEAHRE 161
                         170
                  ....*....|....
gi 2486361636 318 YKKYCRWPIAKLSW 331
Cdd:pfam06889 162 LLSDPDSPWRTLPW 175
 
Name Accession Description Interval E-value
PRK11380 PRK11380
hypothetical protein; Provisional
1-335 6.63e-81

hypothetical protein; Provisional


Pssm-ID: 236903  Cd Length: 353  Bit Score: 251.36  E-value: 6.63e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486361636   1 MKELLQNHPNWRGFPGVGNSLFGQN--HPGQEKLKRFRPQLKWKLRVLFGGACVGTALLLHFYFDAYITSPSEQHSTPLF 78
Cdd:PRK11380    2 KKVLLQNHPGSEKYPVNGWEIFNSNfeRMIKENKAMLLCKWGFYLTCVVAVMFVFAAITSNGLNERGYLLLITAGCSFLY 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486361636  79 LWGMTLIclllanaIIYRTLNGQAQQQRRYYQHAGLVPLAQSQRQALRLDIVQLYDCGFWSETLEYYPLAARVKDDDYHY 158
Cdd:PRK11380   82 LLIMLGL-------IVRAGFKKAKKEQLRYYQAKGIEPLSEEKRQALQLIAVYRFYHGQWSETLEFWPRKPRPGKDTFQY 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486361636 159 NLFPLASA---SSYLQLLDNDWGIATAQDYHEMLQRLHNGMH-SRLFAAQAVKKSEQLSHHLAELIGVTPKDVLDCLHSG 234
Cdd:PRK11380  155 HVLPFDSIdiiSKRRESLEDDWGIEDSEGYCALMEHLLSGDHgANTFKANMEEAPEQMIALLAKLAVFPSDYISDCANHS 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486361636 235 SGKRPPALLWGFDLWRGIVMSRNAFSAGLIDESQAWKDLLKTADFVYEIFASFDDFYTNYRLGNAFWSNNPKMAKF---- 310
Cdd:PRK11380  235 SGKSPAKLIWAADLSWMISLSRTAFQAGTIEEELAWHYILLASRKAHELFESEEDFYKNSRMGFLYWSNCCYRRKLtdae 314
                         330       340       350
                  ....*....|....*....|....*....|..
gi 2486361636 311 ------RLDQF-NGYKKYCRWPIAKLSWPSPS 335
Cdd:PRK11380  315 leacyrYDKQFwEHYSKKCRWPIANVPWGASS 346
DUF1266 pfam06889
Protein of unknown function (DUF1266); This family consists of several hypothetical bacterial ...
173-331 1.04e-16

Protein of unknown function (DUF1266); This family consists of several hypothetical bacterial proteins of around 235 residues in length. Members of this family seem to be found exclusively in the Enterobacteria Salmonella typhimurium and Escherichia coli. The function of this family is unknown.


Pssm-ID: 462031  Cd Length: 175  Bit Score: 77.10  E-value: 1.04e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486361636 173 LDNDWGIATAQDYHEMLQRLHNGMHSRLFAAQAVKKSEQLSHHLAELIGVTPKDVLDCLHSGSGKR----------PPAL 242
Cdd:pfam06889   2 LREWWGITDRESALETLEWLLEEGHRPEFDELLLRLRALSEAERREELAELEDDEKDYARAQGGLPdfvqryyerlGEEG 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486361636 243 LWGFDLWRGIVMSRNAFSAGLIDESQAWKDLLKTADFVYEIFASFDDFYTNYRLGNAFWS-----NNPKMAKFRLDQFNG 317
Cdd:pfam06889  82 ILAWDLGRAVNLARWGYQAGYLSEEEAWEYILKAARLAQRYYSSWEEFAASYLLGRLFWQgegedDPASDYDEMWEAHRE 161
                         170
                  ....*....|....
gi 2486361636 318 YKKYCRWPIAKLSW 331
Cdd:pfam06889 162 LLSDPDSPWRTLPW 175
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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