|
Name |
Accession |
Description |
Interval |
E-value |
| RlmK |
COG1092 |
23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure ... |
3-393 |
1.60e-174 |
|
23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure and biogenesis]; 23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI is part of the Pathway/BioSystem: 23S rRNA modification
Pssm-ID: 440709 [Multi-domain] Cd Length: 392 Bit Score: 492.00 E-value: 1.60e-174
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 3 QLFLKKHEDRRLRTGHLWIFSNEVDvkrSPLTAFAPGEAAQVCAADGRTIGTAYVNPASLIAARIVSRKADEPLDAALIK 82
Cdd:COG1092 1 KVRLKPGKERRLRRGHPWVFSNEID---RVEGELEPGDLVEVEDADGRFLGRGYYNPHSQIAVRLLSRDPDEPIDAAFFA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 83 KRLERALQLRETLF---DVPFYRLCHGEGDWLPGLVLDRYGDVFSAQITTAGMEAQKDALLEVLGELFSPKAVLLRNDVS 159
Cdd:COG1092 78 NRLRKALALRRKLAkreGTNAYRLVHGEADGLPGLIVDRYGDVLVVQEYSAGMERRRDEILEALVEVLGPEGIYLRSDVR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 160 VRTMENLPLLVETGMGTVPDEIEVRESGAAFTVSLAEGQKTGWFYDQRPNRVEAAKYAKGKTVLDAFCYAGAFGVMAARN 239
Cdd:COG1092 158 VRQLEGLPQYEGVLYGEAPEEVEVEENGLKFLVDLTDGQKTGLFLDQRENRARVAELAKGKRVLNLFSYTGGFSVHAAAG 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 240 GAAGVTFLDASRQALDMASRNLAANaGCPG--ETLPGDALDTLASLRDGGRKFGVVCVDPPAFIKRKKDAEQGLNAYRRV 317
Cdd:COG1092 238 GAKSVTSVDLSATALEWAKENAALN-GLDDrhEFVQADAFDWLRELAREGERFDLIILDPPAFAKSKKDLFDAQRDYKDL 316
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2486308466 318 NDLGLQLVENGGILTSCSCSHHLEAEALRRLIAQCAAKRGLNTQLLYQGFQGPDHPVHPSMPETAYLKVFILRVWK 393
Cdd:COG1092 317 NRLALKLLAPGGILVTSSCSRHFSLDLFLEILARAARDAGRRVRIIERLTQPPDHPVLPAFPEGEYLKGLLLRVLP 392
|
|
| PRK15128 |
PRK15128 |
23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI; |
3-391 |
1.12e-75 |
|
23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI;
Pssm-ID: 185082 [Multi-domain] Cd Length: 396 Bit Score: 240.12 E-value: 1.12e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 3 QLFLKKHEDRRLRTGHLWIFSNEVdvKRSPLTAfAPGEAAQVCAADGRTIGTAYVNPASLIAARIVSRKADEPLDAALIK 82
Cdd:PRK15128 4 RLVLAKGREKSLLRRHPWVFSGAV--ARMEGKA-SLGETIDIVDHQGKWLARGAYSPASQIRARVWTFDPDESIDIAFFT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 83 KRLERALQLRETLF---DVPFYRLCHGEGDWLPGLVLDRYGDVFSAQITTAGMEAQKDALLEVLGELFSPKAVLLRNDVS 159
Cdd:PRK15128 81 RRLQQAQKWRDWLAqkdGLDSYRLIAGESDGLPGITIDRFGNFLVLQLLSAGAEYQRAALISALQTLYPECAIYDRSDVA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 160 VRTMENLPLLVETGMGTVP-DEIEVRESGAAFTVSLAEGQKTGWFYDQRPNRVEAAKYAKGKTVLDAFCYAGAFGVMAAR 238
Cdd:PRK15128 161 VRKKEGMELTQGPVTGELPpALLPIEEHGMKLLVDIQGGHKTGYYLDQRDSRLATRRYVENKRVLNCFSYTGGFAVSALM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 239 NGAAGVTFLDASRQALDMASRNLAANA--GCPGETLPGDALDTLASLRDGGRKFGVVCVDPPAFIKRKKDAEQGLNAYRR 316
Cdd:PRK15128 241 GGCSQVVSVDTSQEALDIARQNVELNKldLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKD 320
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2486308466 317 VNDLGLQLVENGGILTSCSCSHHLEAEALRRLIAQCAAKRGLNTQLLYQGFQGPDHPVHPSMPETAYLKVFILRV 391
Cdd:PRK15128 321 INMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQAADHPVIATYPEGLYLKGFACRV 395
|
|
| RlmI_M_like |
cd11572 |
Middle domain of the SAM-dependent methyltransferase RlmI and related proteins; This middle or ... |
79-175 |
5.66e-38 |
|
Middle domain of the SAM-dependent methyltransferase RlmI and related proteins; This middle or central domain is typically found between an N-terminal PUA domain and a C-terminal SAM-dependent methyltransferase domain, such as in the Escherichia coli ribosomal RNA large subunit methyltransferase RlmI (YccW). It may be involved in binding to the RNA substrate.
Pssm-ID: 211413 [Multi-domain] Cd Length: 99 Bit Score: 132.20 E-value: 5.66e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 79 ALIKKRLERALQLRETLF--DVPFYRLCHGEGDWLPGLVLDRYGDVFSAQITTAGMEAQKDALLEVLGELFSPKAVLLRN 156
Cdd:cd11572 1 AFFKRRIEKALALRKRLLldDTNAYRLVHGEGDGLPGLIVDRYGDVLVVQILSAGMERLKELIVEALKELLGPKGIYERS 80
|
90
....*....|....*....
gi 2486308466 157 DVSVRTMENLPLLVETGMG 175
Cdd:cd11572 81 DAAVRELEGLPEEVGVLYG 99
|
|
| PUA_3 |
pfam17785 |
PUA-like domain; This PUA-like domain is found at the N-terminus of SAM-dependent ... |
4-70 |
9.07e-18 |
|
PUA-like domain; This PUA-like domain is found at the N-terminus of SAM-dependent methyltransferases.
Pssm-ID: 436043 [Multi-domain] Cd Length: 64 Bit Score: 76.75 E-value: 9.07e-18
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2486308466 4 LFLKKHEDRRLRTGHLWIFSNEVDvkrSPLTAFAPGEAAQVCAADGRTIGTAYVNPASLIAARIVSR 70
Cdd:pfam17785 1 VTLKKKAEKRLKRGHPWIYSNEIE---RVEGDLEEGDLVRVVDSDGRFLGTGYYNPQSKIAVRVLSR 64
|
|
| rumA |
TIGR00479 |
23S rRNA (uracil-5-)-methyltransferase RumA; This protein family was first proposed to be RNA ... |
212-317 |
6.91e-04 |
|
23S rRNA (uracil-5-)-methyltransferase RumA; This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 129571 [Multi-domain] Cd Length: 431 Bit Score: 41.73 E-value: 6.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 212 EAAKYAKGKTVLDAFCYAGAFGVMAARnGAAGVTFLDASRQALDMASRNLAANAGCPGETLPGDALDTLASLRDGGRKFG 291
Cdd:TIGR00479 286 EWLELQGEERVLDAYCGMGTFTLPLAK-QAKSVVGVEGVPESVEKAQQNAELNGIANVTFYHGTLETVLPKQPWAGNGFD 364
|
90 100
....*....|....*....|....*.
gi 2486308466 292 VVCVDPPafikRKKDAEQGLNAYRRV 317
Cdd:TIGR00479 365 KVLLDPP----RKGCAAGVLRTIIKL 386
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RlmK |
COG1092 |
23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure ... |
3-393 |
1.60e-174 |
|
23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure and biogenesis]; 23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI is part of the Pathway/BioSystem: 23S rRNA modification
Pssm-ID: 440709 [Multi-domain] Cd Length: 392 Bit Score: 492.00 E-value: 1.60e-174
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 3 QLFLKKHEDRRLRTGHLWIFSNEVDvkrSPLTAFAPGEAAQVCAADGRTIGTAYVNPASLIAARIVSRKADEPLDAALIK 82
Cdd:COG1092 1 KVRLKPGKERRLRRGHPWVFSNEID---RVEGELEPGDLVEVEDADGRFLGRGYYNPHSQIAVRLLSRDPDEPIDAAFFA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 83 KRLERALQLRETLF---DVPFYRLCHGEGDWLPGLVLDRYGDVFSAQITTAGMEAQKDALLEVLGELFSPKAVLLRNDVS 159
Cdd:COG1092 78 NRLRKALALRRKLAkreGTNAYRLVHGEADGLPGLIVDRYGDVLVVQEYSAGMERRRDEILEALVEVLGPEGIYLRSDVR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 160 VRTMENLPLLVETGMGTVPDEIEVRESGAAFTVSLAEGQKTGWFYDQRPNRVEAAKYAKGKTVLDAFCYAGAFGVMAARN 239
Cdd:COG1092 158 VRQLEGLPQYEGVLYGEAPEEVEVEENGLKFLVDLTDGQKTGLFLDQRENRARVAELAKGKRVLNLFSYTGGFSVHAAAG 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 240 GAAGVTFLDASRQALDMASRNLAANaGCPG--ETLPGDALDTLASLRDGGRKFGVVCVDPPAFIKRKKDAEQGLNAYRRV 317
Cdd:COG1092 238 GAKSVTSVDLSATALEWAKENAALN-GLDDrhEFVQADAFDWLRELAREGERFDLIILDPPAFAKSKKDLFDAQRDYKDL 316
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2486308466 318 NDLGLQLVENGGILTSCSCSHHLEAEALRRLIAQCAAKRGLNTQLLYQGFQGPDHPVHPSMPETAYLKVFILRVWK 393
Cdd:COG1092 317 NRLALKLLAPGGILVTSSCSRHFSLDLFLEILARAARDAGRRVRIIERLTQPPDHPVLPAFPEGEYLKGLLLRVLP 392
|
|
| PRK15128 |
PRK15128 |
23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI; |
3-391 |
1.12e-75 |
|
23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI;
Pssm-ID: 185082 [Multi-domain] Cd Length: 396 Bit Score: 240.12 E-value: 1.12e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 3 QLFLKKHEDRRLRTGHLWIFSNEVdvKRSPLTAfAPGEAAQVCAADGRTIGTAYVNPASLIAARIVSRKADEPLDAALIK 82
Cdd:PRK15128 4 RLVLAKGREKSLLRRHPWVFSGAV--ARMEGKA-SLGETIDIVDHQGKWLARGAYSPASQIRARVWTFDPDESIDIAFFT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 83 KRLERALQLRETLF---DVPFYRLCHGEGDWLPGLVLDRYGDVFSAQITTAGMEAQKDALLEVLGELFSPKAVLLRNDVS 159
Cdd:PRK15128 81 RRLQQAQKWRDWLAqkdGLDSYRLIAGESDGLPGITIDRFGNFLVLQLLSAGAEYQRAALISALQTLYPECAIYDRSDVA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 160 VRTMENLPLLVETGMGTVP-DEIEVRESGAAFTVSLAEGQKTGWFYDQRPNRVEAAKYAKGKTVLDAFCYAGAFGVMAAR 238
Cdd:PRK15128 161 VRKKEGMELTQGPVTGELPpALLPIEEHGMKLLVDIQGGHKTGYYLDQRDSRLATRRYVENKRVLNCFSYTGGFAVSALM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 239 NGAAGVTFLDASRQALDMASRNLAANA--GCPGETLPGDALDTLASLRDGGRKFGVVCVDPPAFIKRKKDAEQGLNAYRR 316
Cdd:PRK15128 241 GGCSQVVSVDTSQEALDIARQNVELNKldLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKD 320
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2486308466 317 VNDLGLQLVENGGILTSCSCSHHLEAEALRRLIAQCAAKRGLNTQLLYQGFQGPDHPVHPSMPETAYLKVFILRV 391
Cdd:PRK15128 321 INMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQAADHPVIATYPEGLYLKGFACRV 395
|
|
| RlmI_M_like |
cd11572 |
Middle domain of the SAM-dependent methyltransferase RlmI and related proteins; This middle or ... |
79-175 |
5.66e-38 |
|
Middle domain of the SAM-dependent methyltransferase RlmI and related proteins; This middle or central domain is typically found between an N-terminal PUA domain and a C-terminal SAM-dependent methyltransferase domain, such as in the Escherichia coli ribosomal RNA large subunit methyltransferase RlmI (YccW). It may be involved in binding to the RNA substrate.
Pssm-ID: 211413 [Multi-domain] Cd Length: 99 Bit Score: 132.20 E-value: 5.66e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 79 ALIKKRLERALQLRETLF--DVPFYRLCHGEGDWLPGLVLDRYGDVFSAQITTAGMEAQKDALLEVLGELFSPKAVLLRN 156
Cdd:cd11572 1 AFFKRRIEKALALRKRLLldDTNAYRLVHGEGDGLPGLIVDRYGDVLVVQILSAGMERLKELIVEALKELLGPKGIYERS 80
|
90
....*....|....*....
gi 2486308466 157 DVSVRTMENLPLLVETGMG 175
Cdd:cd11572 81 DAAVRELEGLPEEVGVLYG 99
|
|
| PUA_RlmI |
cd21153 |
PUA RNA-binding domain of the SAM-dependent methyltransferase RlmI and related proteins; The ... |
4-74 |
7.75e-18 |
|
PUA RNA-binding domain of the SAM-dependent methyltransferase RlmI and related proteins; The RNA-binding PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was detected in a number of proteins involved in RNA metabolism. Members of this subfamily contain PUA domains that co-occur N-terminal to SAM-dependent methyltransferase domains and include Escherichia coli RlmI (rRNA large subunit methyltransferase gene I, also called YccW) and Thermus thermophilus methyltransferase RlmO, which are 5-methylcytosine methyltransferases (m5C MTases) that play a role in modifying 23S rRNA. This subfamily also includes Pyrococcus horikoshii PH1915 that may play a role as a 5-methyluridine MTase, and/or perform similar roles.
Pssm-ID: 409295 [Multi-domain] Cd Length: 70 Bit Score: 77.24 E-value: 7.75e-18
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2486308466 4 LFLKKHEDRRLRTGHLWIFSNEVD-VKRSPltafAPGEAAQVCAADGRTIGTAYVNPASLIAARIVSRKADE 74
Cdd:cd21153 3 IVLKKGKEKSLRRGHPWIFSGAIDrIEGKP----EPGDLVDVYDHKGKFLGTGLYNPHSQIRVRVLSFDKEE 70
|
|
| PUA_3 |
pfam17785 |
PUA-like domain; This PUA-like domain is found at the N-terminus of SAM-dependent ... |
4-70 |
9.07e-18 |
|
PUA-like domain; This PUA-like domain is found at the N-terminus of SAM-dependent methyltransferases.
Pssm-ID: 436043 [Multi-domain] Cd Length: 64 Bit Score: 76.75 E-value: 9.07e-18
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2486308466 4 LFLKKHEDRRLRTGHLWIFSNEVDvkrSPLTAFAPGEAAQVCAADGRTIGTAYVNPASLIAARIVSR 70
Cdd:pfam17785 1 VTLKKKAEKRLKRGHPWIYSNEIE---RVEGDLEEGDLVRVVDSDGRFLGTGYYNPQSKIAVRVLSR 64
|
|
| rlmL |
PRK11783 |
bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2)) ... |
179-300 |
5.45e-16 |
|
bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL;
Pssm-ID: 236981 [Multi-domain] Cd Length: 702 Bit Score: 79.85 E-value: 5.45e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 179 DEIEVRESGAAFTVSLAEGQKTGWFYDQRPNRVEAAKYAKGKTVLDAFCYAGAFGVMAARNGAAGVTFLDASRQALDMAS 258
Cdd:PRK11783 499 EFLEVTEYGAKLLVNLTDYLDTGLFLDHRPTRRMIGQMAKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAE 578
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 2486308466 259 RNLAANAgcpgetLPGD-----ALDTLASLRDGGRKFGVVCVDPPAF 300
Cdd:PRK11783 579 RNFALNG------LSGRqhrliQADCLAWLKEAREQFDLIFIDPPTF 619
|
|
| Methyltrans_SAM |
pfam10672 |
S-adenosylmethionine-dependent methyltransferase; Members of this family are ... |
102-334 |
4.42e-11 |
|
S-adenosylmethionine-dependent methyltransferase; Members of this family are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyze the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalyzed by the S-adenosylmethionine-dependent methyltransferases.
Pssm-ID: 287624 [Multi-domain] Cd Length: 286 Bit Score: 62.97 E-value: 4.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 102 RLCHGEG-----------DWLPG-LVLDRYGDVFSA----------QITTAGMEAQKDALLEVLGELFSPKAVllrndvs 159
Cdd:pfam10672 2 RLFHGRGrcwpgleqltcDWLQGqLLVNLFKEVDPAflqalkrgleQLTTAPAWAAKQGRHLVLQHRYADGAP------- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 160 vrtmenlpllVETGMGTVPDEIEVRESGAAFTVSLAEGQKTGWFYDQRPNRVEAAKYAKGKTVLDAFCYAGAFGVMAARN 239
Cdd:pfam10672 75 ----------SEVLSGELLETPVVVENGLKYQLDIGRNQNFGLFLDMRLGRRWVQENAKGKNVLNLFAYTCGFSVAAIAG 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 240 GAAGVTFLDASRQALDMASRNLAANAGCPGET--LPGDALDTLASLRDGGrKFGVVCVDPPAFIKRK----KDAEQGLna 313
Cdd:pfam10672 145 GASQVVNVDMARGSLNKGRDNHRLNGHDLGRVsfLGHDIFKSWGKIKKLG-PYDLVIIDPPSFQKGSfaltKDYKKIL-- 221
|
250 260
....*....|....*....|.
gi 2486308466 314 yRRVNDLglqLVEnGGILTSC 334
Cdd:pfam10672 222 -RRLPEL---LVE-GGTVLAC 237
|
|
| RsmD |
COG0742 |
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA ... |
219-298 |
2.17e-08 |
|
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA G966 N2-methylase RsmD is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 440505 [Multi-domain] Cd Length: 183 Bit Score: 53.55 E-value: 2.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 219 GKTVLDAFCYAGAFGVMAARNGAAGVTFLDASRQALDMASRNLAA-NAGCPGETLPGDALDTLASLRdgGRKFGVVCVDP 297
Cdd:COG0742 42 GARVLDLFAGSGALGLEALSRGAASVVFVEKDRKAAAVIRKNLEKlGLEDRARVIRGDALRFLKRLA--GEPFDLVFLDP 119
|
.
gi 2486308466 298 P 298
Cdd:COG0742 120 P 120
|
|
| TrmA |
COG2265 |
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure ... |
211-298 |
2.64e-08 |
|
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 441866 [Multi-domain] Cd Length: 377 Bit Score: 55.18 E-value: 2.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 211 VEAAKYAKGKTVLDAFCYAGAFGVMAARNGAAgVTFLDASRQALDMASRNLAANAGCPGETLPGDALDTLASLRDGGRkF 290
Cdd:COG2265 226 LEWLDLTGGERVLDLYCGVGTFALPLARRAKK-VIGVEIVPEAVEDARENARLNGLKNVEFVAGDLEEVLPELLWGGR-P 303
|
....*...
gi 2486308466 291 GVVCVDPP 298
Cdd:COG2265 304 DVVVLDPP 311
|
|
| MTS |
pfam05175 |
Methyltransferase small domain; This domain is found in ribosomal RNA small subunit ... |
217-298 |
5.71e-07 |
|
Methyltransferase small domain; This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.
Pssm-ID: 428349 [Multi-domain] Cd Length: 170 Bit Score: 49.13 E-value: 5.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 217 AKGKTVLDAFCYAGAFG-VMAARNGAAGVTFLDASRQALDMASRNLAANAGCPGETLPGDALDTLASlrdggRKFGVVCV 295
Cdd:pfam05175 30 DLSGKVLDLGCGAGVLGaALAKESPDAELTMVDINARALESARENLAANGLENGEVVASDVYSGVED-----GKFDLIIS 104
|
...
gi 2486308466 296 DPP 298
Cdd:pfam05175 105 NPP 107
|
|
| PRK14967 |
PRK14967 |
putative methyltransferase; Provisional |
212-298 |
4.18e-06 |
|
putative methyltransferase; Provisional
Pssm-ID: 184931 [Multi-domain] Cd Length: 223 Bit Score: 47.35 E-value: 4.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 212 EAAKYAKGKTVLDAFCYAGAFGVMAARNGAAGVTFLDASRQALDMASRNlAANAGCPGETLPGDALDTLaslrdGGRKFG 291
Cdd:PRK14967 30 AAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLN-ALLAGVDVDVRRGDWARAV-----EFRPFD 103
|
....*..
gi 2486308466 292 VVCVDPP 298
Cdd:PRK14967 104 VVVSNPP 110
|
|
| Trm11 |
COG1041 |
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 ... |
211-298 |
2.73e-05 |
|
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 N-methylase Trm11 is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440663 [Multi-domain] Cd Length: 172 Bit Score: 44.17 E-value: 2.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 211 VEAAKYAKGKTVLDAFCYAGAFGVMAARNG--AAGVtflDASRQALDMASRNLAANAGCPGETLPGDALDTlaSLRDGgr 288
Cdd:COG1041 19 VNLAGAKEGDTVLDPFCGTGTILIEAGLLGrrVIGS---DIDPKMVEGARENLEHYGYEDADVIRGDARDL--PLADE-- 91
|
90
....*....|
gi 2486308466 289 KFGVVCVDPP 298
Cdd:COG1041 92 SVDAIVTDPP 101
|
|
| COG4076 |
COG4076 |
Predicted RNA methylase [General function prediction only]; |
209-278 |
3.11e-05 |
|
Predicted RNA methylase [General function prediction only];
Pssm-ID: 443253 [Multi-domain] Cd Length: 230 Bit Score: 45.03 E-value: 3.11e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2486308466 209 NRVEAAKYA------KGKTVLDAFCYAGAFGVMAARNGAAGVTFLDASRQALDMASRNLAANaGCPG--ETLPGDALD 278
Cdd:COG4076 20 ERNDAFKAAiervvkPGDVVLDIGTGSGLLSMLAARAGAKKVYAVEVNPDIAAVARRIIAAN-GLSDriTVINADATD 96
|
|
| UbiE |
COG2226 |
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ... |
203-278 |
3.89e-05 |
|
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis
Pssm-ID: 441828 [Multi-domain] Cd Length: 143 Bit Score: 43.44 E-value: 3.89e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2486308466 203 FYDQRPNRVEAAKYAKGKTVLDAFCYAGAFGVMAARNGAAgVTFLDASRQALDMAsRNLAANAGCPGETLPGDALD 278
Cdd:COG2226 7 RYDGREALLAALGLRPGARVLDLGCGTGRLALALAERGAR-VTGVDISPEMLELA-RERAAEAGLNVEFVVGDAED 80
|
|
| RsmC |
COG2813 |
16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA ... |
212-352 |
4.90e-05 |
|
16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA G1207 methylase RsmC is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 442062 [Multi-domain] Cd Length: 191 Bit Score: 43.64 E-value: 4.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 212 EAAKYAKGKTVLDAFCYAGAFGVMAA-RNGAAGVTFLDASRQALDMASRNLAANAGCPGETLPGDALDTLAslrdgGRKF 290
Cdd:COG2813 43 EHLPEPLGGRVLDLGCGYGVIGLALAkRNPEARVTLVDVNARAVELARANAAANGLENVEVLWSDGLSGVP-----DGSF 117
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2486308466 291 GVVCVDPPAFIKRKKDAEQGL----NAYRRVNDLG-LQLVENggiltscscsHHLEAEA-LRRLIAQC 352
Cdd:COG2813 118 DLILSNPPFHAGRAVDKEVAHaliaDAARHLRPGGeLWLVAN----------RHLPYERkLEELFGNV 175
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
221-317 |
8.01e-05 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 41.65 E-value: 8.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 221 TVLDAFCYAGAFGVMAARNGAAGVTFLDASRQALDMASRNLAANAGCPGETLPGDALDTLAslrDGGRKFGVVCVDPPaF 300
Cdd:cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP---EADESFDVIISDPP-L 76
|
90
....*....|....*..
gi 2486308466 301 IKRKKDAEQGLNAYRRV 317
Cdd:cd02440 77 HHLVEDLARFLEEARRL 93
|
|
| rumA |
TIGR00479 |
23S rRNA (uracil-5-)-methyltransferase RumA; This protein family was first proposed to be RNA ... |
212-317 |
6.91e-04 |
|
23S rRNA (uracil-5-)-methyltransferase RumA; This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 129571 [Multi-domain] Cd Length: 431 Bit Score: 41.73 E-value: 6.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 212 EAAKYAKGKTVLDAFCYAGAFGVMAARnGAAGVTFLDASRQALDMASRNLAANAGCPGETLPGDALDTLASLRDGGRKFG 291
Cdd:TIGR00479 286 EWLELQGEERVLDAYCGMGTFTLPLAK-QAKSVVGVEGVPESVEKAQQNAELNGIANVTFYHGTLETVLPKQPWAGNGFD 364
|
90 100
....*....|....*....|....*.
gi 2486308466 292 VVCVDPPafikRKKDAEQGLNAYRRV 317
Cdd:TIGR00479 365 KVLLDPP----RKGCAAGVLRTIIKL 386
|
|
| Methyltransf_25 |
pfam13649 |
Methyltransferase domain; This family appears to be a methyltransferase domain. |
222-317 |
9.98e-04 |
|
Methyltransferase domain; This family appears to be a methyltransferase domain.
Pssm-ID: 463945 [Multi-domain] Cd Length: 96 Bit Score: 37.93 E-value: 9.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486308466 222 VLDAFCYAGAFGVMAARNGAAGVTFLDASRQALDMAsRNLAANAGCPGETLPGDALDtlasLRDGGRKF-GVVCVDPPAF 300
Cdd:pfam13649 1 VLDLGCGTGRLTLALARRGGARVTGVDLSPEMLERA-RERAAEAGLNVEFVQGDAED----LPFPDGSFdLVVSSGVLHH 75
|
90
....*....|....*..
gi 2486308466 301 IKRkKDAEQGLNAYRRV 317
Cdd:pfam13649 76 LPD-PDLEAALREIARV 91
|
|
| |
