|
Name |
Accession |
Description |
Interval |
E-value |
| FepA |
COG4771 |
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ... |
95-706 |
2.22e-73 |
|
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];
Pssm-ID: 443803 [Multi-domain] Cd Length: 612 Bit Score: 250.54 E-value: 2.22e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 95 SGEQLDEVSVAARKQSTVMSTRgPLIEQLITGEELCKAACCNLGESFETNASVDVSYADAVTGAKQIQLLGLTGKYVQMM 174
Cdd:COG4771 23 DATELEEVVVTATRTEQSLSDA-PASVSVITAEEIEKLGATDLADALRLLPGVSVTRSGGRGGSSGISIRGLGGDRVLVL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 175 TENMP-NFRGLASLYGLTYIPGPWMSAISVSKGTGSVINGYESMAGQISVDYKKPRDPELLSANVFTSSEGMYEFNSNFS 253
Cdd:COG4771 102 IDGVPvNNPALGGGGDLSYIPPDDIERIEVIRGPASALYGSDAIGGVINIITKKPTDELEGSVSLGYGSNGNGTYSGSLS 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 254 IKF-SDKWStmFLLHGDWM--EEPHDGNKDGFLDMPEKTQYNVMNRWAYK-DDTWFLQFGGKFIDEERNGGQTTHGGHAQ 329
Cdd:COG4771 182 LGGpGDKLS--FLLSGSYRdrDGYLDYRNGGFVGNSGYERYNLNAKLGYRlSDNHRLSLSGGYSRQDRDGGPPTLGDTEI 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 330 VDENYGLYKIGIDTRRYEAFLKLGYlmpqyeNTSMAILVNYSDHTQDSYYGPKMYNAG------QKSLFVNYIYQSIFGT 403
Cdd:COG4771 260 SSDNAGDRDTTTDRGNYSLRYNGDL------GDNLDLSLYYSRTDRDSTNGSLGGSTGsfsdsdDTTYGLELDLTYPLGG 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 404 NpsQMYSAGLSFNYDKYDEDFRDPVFNYgedistdfinmkrEERVPGAFFQYTGEFLDqRFIVMAGLRYDYHNIFG---- 479
Cdd:COG4771 334 N--HTLTLGAEYRYDDLDSSSFLGGADA-------------SRDTYGLFAQDEWKLTD-KLTLTAGLRYDYYSTFGasny 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 480 SIWTPRAHIMYKPDEFTSIKATFGRGLRTPNiLAENSYLLASAANFYVNGellgkNPalldDLKMEDSWNFGANVNRKFe 559
Cdd:COG4771 398 TAFSPRLGLRYDLSDNLTLRASYGRGFRAPS-LAELYGSGTGTPGRYVLG-----NP----DLKPETSDNYELGLEYRL- 466
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 560 vFGRTLNINLDYYHTKFNDQVVVDNETAY-NKVNFYNLDGDSYSNCYQVEVKYELIPRLEATLAYRYNDVKTTINGDLKR 638
Cdd:COG4771 467 -GNGGLSLSLTGFYTDIKDLIVLVPVGPGpGDVLQYENVGKARTYGLELELKYRLGKGLTLTASYTYLDSKIDDGDTGEP 545
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2485534494 639 TPLTSRYKGLVNLSYftNLKKWQFDFTTQFNGSGRLPEQGGIADEYRVASRFDDFQIMNAQVTKYFRL 706
Cdd:COG4771 546 LPNVPPHKANLGLDY--RLPKWWLLLLLTRYYGGRYVTPPSGRLEGYTPGYTLLDLRASYKLTKNLTL 611
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
124-671 |
3.30e-28 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 120.63 E-value: 3.30e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 124 ITGEELCKAACCNLGESFETNASVDVSYaDAVTGAKQIQLLGLTGKYVQMMTENMP-NFRGLASLYGLTYIPgPWM-SAI 201
Cdd:cd01347 5 ITAEDIEKQPATSLADLLRRIPGVSVTR-GGGGGGSTISIRGFGPDRTLVLVDGLPlASSNYGRGVDLNTIP-PELiERV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 202 SVSKGTGSVINGYESMAGQISVDYKKPRDPELLSANVFTSSEGM-----YEFNSNFSIKFSDKWStmFLLHGDWMEEPHD 276
Cdd:cd01347 83 EVLKGPSSALYGSGAIGGVVNIITKRPTDEFGGSVTAGYGSDNSgssggGGFDVSGALADDGAFG--ARLYGAYRDGDGT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 277 GNKDGFLDMPEKTQYNVMNRWAYK--DDTWFLQFGGKFIDEERNGGQTTHGGHAQVDENYGLYKIG--------IDTRRY 346
Cdd:cd01347 161 IDGDGQADDSDEERYNVAGKLDWRpdDDTRLTLDAGYQDQDADGPGGTLPANGTGSSLGGGPSSNTngdrdwdyRDRYRK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 347 EAFLKLGYLmPQYENTSMAILVNYSdHTQDSYYGPKmYNAGQKSLFVNYIYQSIFGTNPSQMYSAGLSFNYdKYDEDFRD 426
Cdd:cd01347 241 RASLGLEHD-LNDTGWTLRANLSYS-YTDNDGDPLI-LNGGNNAAGGDLGRSGYSSERDTTQLGFDAGLNA-PFGTGPVA 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 427 PVFNYGedisTDFINMKREERVPGAFFQYTGEFLDqRFIVMAGLRYDYHNI--------------FGSIWTPRAHIMYKP 492
Cdd:cd01347 317 HTLTLG----VEYRREELDEKQTALYAQDTIELTD-DLTLTLGLRYDHYDQdskdtiaggttakkSYSHWSPSLGLVYKL 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 493 DEFTSIKATFGRGLRTPNILaeNSYLLASAANFYVNGellgkNPalldDLKME--DSWNFGAnvnrKFEvFGRTLNINLD 570
Cdd:cd01347 392 TDGLSLYASYSQGFRAPSLG--ELYGGGSHGGTAAVG-----NP----NLKPEksKQYELGL----KYD-PGDGLTLSAA 455
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 571 YYHTKFNDQVVVDNETAYNK-VNFYNLDGDSYSNCYQVEVKYELIPRLEATLAYRYNDVKTTINGDL---KRTPLTSRYK 646
Cdd:cd01347 456 LFRIDIKNEIVSTPTNTGLGlVTVYVNGGKARIRGVELEASYDLTDGLGLTGSYTYTDTEVKRTDGAttgNRLPGIPKHT 535
|
570 580
....*....|....*....|....*
gi 2485534494 647 GLVNLSYFTNLKKWQFDFTTQFNGS 671
Cdd:cd01347 536 ANLGLDYELPDEGLTAGGGVRYRGK 560
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
369-756 |
1.08e-23 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 105.24 E-value: 1.08e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 369 NYSDHTQDSYYGPKMYNAGQKSLFVNYIYQSIFGtnpsqMYSAGLSFNYDKYDEDFRDPvfnYGEDISTDFINMKREERV 448
Cdd:pfam00593 103 GAGDYLSDDRLYGLYGLDGDLELSLDLSHDLLLG-----VELRTAGLDYRRLDDDAYDP---YDPANPSSSSYSDTTTDS 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 449 PGAFFQYTGEFLDqRFIVMAGLRYDYHNIFG--------------SIWTPRAHIMYKPDEFTSIKATFGRGLRTPNILAE 514
Cdd:pfam00593 175 YGLYLQDNIKLTD-RLTLTLGLRYDHYSTDGddgngggdnfsrsySAFSPRLGLVYKPTDNLSLYASYSRGFRAPSLGEL 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 515 NSYLLASAANFYVNGellgkNPalldDLKMEDSWNFGANvnrkFEVFGRTLNINLDYYHTKFNDQVVVDNETAYNKVNFY 594
Cdd:pfam00593 254 YGSGSGGGGGAVAGG-----NP----DLKPETSDNYELG----LKYDDGRLSLSLALFYIDIKNLITSDPDGPGLGGTVY 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 595 NLD--GDSYSNCYQVEVKYELIPRLEATLAYRYNDVKTTINGDLKRTPL--TSRYKGLVNLSYFTNLKKWQFDFTTQFNG 670
Cdd:pfam00593 321 TYTnvGKARIRGVELELSGRLWGLGLSGGGYTYTDADDDADADDTGNPLpnVPRHTANLGLTYDFPLGGWGARLGARYVG 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 671 SGRLpeqggIADEYRVASRFDDFQIMNAQVT-KYFRLWSIYAGCENIGDFTQKNpivnshNPWSDTFDSSKVWGPlhGRK 749
Cdd:pfam00593 401 SGER-----RYGDAANTFKTPGYTLVDLSAGyRLNKNLTLRLGVNNLFDKYYKR------YYSSGGGNLGGYPGP--GRT 467
|
....*..
gi 2485534494 750 FYIGLRF 756
Cdd:pfam00593 468 FYLGLSY 474
|
|
| CarbopepD_reg_2 |
pfam13715 |
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, ... |
21-104 |
2.53e-16 |
|
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.
Pssm-ID: 433425 [Multi-domain] Cd Length: 88 Bit Score: 74.55 E-value: 2.53e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 21 IKGRVMEETEdGEvALPGANVYWVGTSKGSVSDANGEFKIKWEKVGK--LVVSFIGYQSDTIEVK-STDKFVTCTLRSGE 97
Cdd:pfam13715 1 ISGTVVDENT-GE-PLPGATVYVKGTTKGTVTDADGNFELKNLPAGTytLVVSFVGYKTQEKKVTvSNDNTLDVNFLLKE 78
|
90
....*....|
gi 2485534494 98 ---QLDEVSV 104
Cdd:pfam13715 79 dalLLDEVVV 88
|
|
| TonB-hemin |
TIGR01785 |
TonB-dependent heme/hemoglobin receptor family protein; This model represents the ... |
99-598 |
7.35e-15 |
|
TonB-dependent heme/hemoglobin receptor family protein; This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273807 [Multi-domain] Cd Length: 665 Bit Score: 78.59 E-value: 7.35e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 99 LDEVSVAARKQSTVMSTRGPLIEqLITGEELCKAACCNLGESFETNASVDVSYADAvTGAKQIQLLGLTGKYVQMMTENM 178
Cdd:TIGR01785 1 LDTVTVTATRTRQVLSEAPASVS-VISGEQIESKQANNLADALNTVPGVDVTGGGR-PPGQSINIRGLQDNRVLVVVDGA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 179 P-NFRGLASLYGLTYIPGPWMSAISVSKGTGSVINGYESMAGQISVDYKKPRDpeLL--------SANVFTSSEG-MYEF 248
Cdd:TIGR01785 79 RqNYQRGGAHNGSLFVDPELLKRIEIVKGPSSSLYGSGALGGVVAFRTKDAAD--LLrpgqlfggLAKLSYGSNNnSFGG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 249 NSNFSIKFSDKWStmFLLHGDW--MEEPHDGNKDGfldmPEKTQYNVMNRWAykDDTWFLQFGG--KFIDEERNGGQTTH 324
Cdd:TIGR01785 157 SVAVAGRLDDNLD--ALVAATYrdGGNYRNGNKEE----ATNSAYVQKNLLA--KLGWQLDDAQrlEFSYFTTEGSLDEA 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 325 GGHAQVDEN-YGL--YKIGIDTRRYEAFLKLGYLMPQ--YENTSMAilVNYSDHTQDSYygPKMYNAGQKSLFVNYIY-- 397
Cdd:TIGR01785 229 QNSGPGTEYvLGSssTLLASSTRDRSATLTYNWTPEDnpWLDATAS--LYYNRTENDND--RSARGVGREEGYQYTTYga 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 398 ----QSIFGTNPSQMYSAGLSFNYDKydedfrDPVFNYGEDISTD--FINMKREERVPGAFFQYTGEFLDQRFIVMAGLR 471
Cdd:TIGR01785 305 tlqnTSRFDVASWSTLTYGVDWMKDK------RRTESFDPNSVTTivPNPPSAKEYFFGLFLQDNIPLLDDRLTLSAGLR 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 472 YDYH-----NIFG--------SIWTPRAHIMYKPDEFTSIKATFGRGLRTPNIlaeNSYLLASAANFYVNGELLGKNPal 538
Cdd:TIGR01785 379 YDHYklspkTTADteavdrsySRWSPSLGLSYKPVDWLTLYASYSQGFRAPSI---DELYGTGDHPGTPGGYTFAPNP-- 453
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 539 ldDLKME--DSWNFGANVNRKFEVFGR-TLNINLDYYHTKFND-----QVVVDNETA--YNKVNFYNLDG 598
Cdd:TIGR01785 454 --NLKPEtsKTWELGANLSFDNLLLDNdQLQFKVAYFYNDVKDfidltIGVTDNVTAgmNNITQYVNIDG 521
|
|
| OMP_RagA_SusC |
TIGR04056 |
TonB-linked outer membrane protein, SusC/RagA family; This model describes a distinctive clade ... |
19-112 |
2.02e-11 |
|
TonB-linked outer membrane protein, SusC/RagA family; This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 274948 [Multi-domain] Cd Length: 981 Bit Score: 67.62 E-value: 2.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 19 QTIKGRVMEETedGEvALPGANVYWVGTSKGSVSDANGEFKIKWEKVGKLVVSFIGYQSDTIEVKStDKFVTCTLRS-GE 97
Cdd:TIGR04056 1 ITVTGVVVDET--GE-PLIGASVVVKGTTNGTITDIDGNFSLKVPPGAVLVFSYIGYKTQEVKVKG-QKNLNITLKEdTQ 76
|
90
....*....|....*...
gi 2485534494 98 QLDEVSVAA---RKQSTV 112
Cdd:TIGR04056 77 ELDEVVVVGygtQKKKSL 94
|
|
| PRK13524 |
PRK13524 |
FepA family TonB-dependent siderophore receptor; |
460-621 |
1.33e-08 |
|
FepA family TonB-dependent siderophore receptor;
Pssm-ID: 237410 [Multi-domain] Cd Length: 744 Bit Score: 58.50 E-value: 1.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 460 LDQRFIVMAGLRYDYHNIFGSIWTPRAHIMYKPDEFTSIKATFGRGLRTPNILAENS-YLLASAAN-FYVNGE----LLG 533
Cdd:PRK13524 443 LTDSTMLTPGLRFDHHSIVGNNWSPSLNLSQGLGDDFTLKMGIARAYKAPNLYQTNPnYILYSKGQgCYASAGngcyLQG 522
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 534 KnpallDDLKMEDSWNF--GanvnrkFEVFGRTLNINLDYYHTKFNDQVVVDNETAYNkvnfynlDGDSYSNCYQVE-VK 610
Cdd:PRK13524 523 N-----DDLKAETSVNKeiG------LEFKRDGWLAGLTWFRNDYRNKIEAGYVPVGT-------NSVGKTDIYQWEnVP 584
|
170
....*....|.
gi 2485534494 611 YELIPRLEATL 621
Cdd:PRK13524 585 KAVVEGLEGTL 595
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| FepA |
COG4771 |
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ... |
95-706 |
2.22e-73 |
|
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];
Pssm-ID: 443803 [Multi-domain] Cd Length: 612 Bit Score: 250.54 E-value: 2.22e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 95 SGEQLDEVSVAARKQSTVMSTRgPLIEQLITGEELCKAACCNLGESFETNASVDVSYADAVTGAKQIQLLGLTGKYVQMM 174
Cdd:COG4771 23 DATELEEVVVTATRTEQSLSDA-PASVSVITAEEIEKLGATDLADALRLLPGVSVTRSGGRGGSSGISIRGLGGDRVLVL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 175 TENMP-NFRGLASLYGLTYIPGPWMSAISVSKGTGSVINGYESMAGQISVDYKKPRDPELLSANVFTSSEGMYEFNSNFS 253
Cdd:COG4771 102 IDGVPvNNPALGGGGDLSYIPPDDIERIEVIRGPASALYGSDAIGGVINIITKKPTDELEGSVSLGYGSNGNGTYSGSLS 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 254 IKF-SDKWStmFLLHGDWM--EEPHDGNKDGFLDMPEKTQYNVMNRWAYK-DDTWFLQFGGKFIDEERNGGQTTHGGHAQ 329
Cdd:COG4771 182 LGGpGDKLS--FLLSGSYRdrDGYLDYRNGGFVGNSGYERYNLNAKLGYRlSDNHRLSLSGGYSRQDRDGGPPTLGDTEI 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 330 VDENYGLYKIGIDTRRYEAFLKLGYlmpqyeNTSMAILVNYSDHTQDSYYGPKMYNAG------QKSLFVNYIYQSIFGT 403
Cdd:COG4771 260 SSDNAGDRDTTTDRGNYSLRYNGDL------GDNLDLSLYYSRTDRDSTNGSLGGSTGsfsdsdDTTYGLELDLTYPLGG 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 404 NpsQMYSAGLSFNYDKYDEDFRDPVFNYgedistdfinmkrEERVPGAFFQYTGEFLDqRFIVMAGLRYDYHNIFG---- 479
Cdd:COG4771 334 N--HTLTLGAEYRYDDLDSSSFLGGADA-------------SRDTYGLFAQDEWKLTD-KLTLTAGLRYDYYSTFGasny 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 480 SIWTPRAHIMYKPDEFTSIKATFGRGLRTPNiLAENSYLLASAANFYVNGellgkNPalldDLKMEDSWNFGANVNRKFe 559
Cdd:COG4771 398 TAFSPRLGLRYDLSDNLTLRASYGRGFRAPS-LAELYGSGTGTPGRYVLG-----NP----DLKPETSDNYELGLEYRL- 466
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 560 vFGRTLNINLDYYHTKFNDQVVVDNETAY-NKVNFYNLDGDSYSNCYQVEVKYELIPRLEATLAYRYNDVKTTINGDLKR 638
Cdd:COG4771 467 -GNGGLSLSLTGFYTDIKDLIVLVPVGPGpGDVLQYENVGKARTYGLELELKYRLGKGLTLTASYTYLDSKIDDGDTGEP 545
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2485534494 639 TPLTSRYKGLVNLSYftNLKKWQFDFTTQFNGSGRLPEQGGIADEYRVASRFDDFQIMNAQVTKYFRL 706
Cdd:COG4771 546 LPNVPPHKANLGLDY--RLPKWWLLLLLTRYYGGRYVTPPSGRLEGYTPGYTLLDLRASYKLTKNLTL 611
|
|
| CirA |
COG1629 |
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism]; |
99-718 |
4.82e-37 |
|
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
Pssm-ID: 441236 [Multi-domain] Cd Length: 644 Bit Score: 148.05 E-value: 4.82e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 99 LDEVSVAARKQSTVMSTrGPLIEQLITGEELCKAACCNLGESFETNASVDVSYADAvtGAKQIQLLGLTGKY--VQMMTE 176
Cdd:COG1629 1 LEEVVVTATRTDESLQD-VPGSVSVISREQLEDQPATDLGDLLRRVPGVSVTSAGG--GAGQISIRGFGGGGnrVLVLVD 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 177 NMPNFRGLASLYGLTYIPGPWMSAISVSKGTGSVINGYESMAGQISVDYKKPRDPELLSANVFTSSEGMYEFNSNFSIKf 256
Cdd:COG1629 78 GVPLNDPSGGDGGLSYIDPEDIERVEVLRGPSSALYGSGALGGVINIVTKKPKDGKGGEVSASYGSYGTYRASLSLSGG- 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 257 SDKWStmFLLHGDWMEEphdgnkDGFLDMPEKTQYNVMNRWAYK-DDTWFLQFGGKFIDEERNGGQTT-------HGGHA 328
Cdd:COG1629 157 NGKLA--YRLSASYRDS------DGYRDNSDSDRYNLRAKLGYQlGDDTRLTLSASYSDSDQDSPGYLtlaalrpRGAMD 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 329 QVDENYGLYKIGIDTRRYEAFLKLGYLMpqyENTSMAILVNYSDHTQ--DSYYGPKMYNAG----------QKSLFVNYI 396
Cdd:COG1629 229 DGTNPYSNDTDDNTRDRYSLSLEYEHLG---DGLKLSASAYYRYDDTdlDSDFTPTPADGGtleqtdfdnrTYGLELRLT 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 397 YQSIFGTNPSqmYSAGlsFNYDKYDEDFRDPVFNYGEDISTDFINMKR---EERVPGAFFQYTGEFLDqRFIVMAGLRYD 473
Cdd:COG1629 306 YDLGFGGKHT--LLVG--LDYQRQDLDGSGYPLDLGSGSLPTLTSGADddgTTTSLALYAQDTYKLTD-KLTLTAGLRYD 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 474 YHNIFG----------------SIWTPRAHIMYKPDEFTSIKATFGRGLRTPNIlaenSYLLASAANFYVNGellgkNPa 537
Cdd:COG1629 381 YVSYDVddtvtgtdsasgsrsySAFSPSLGLTYQLSPNLSLYASYSRGFRAPTF----GELYANGTDPYSVG-----NP- 450
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 538 lldDLKMEDSWNFgaNVNRKFEVFGRTLNINLDYYHTKFND-QVVVDNETAYNKVNFYNLDGDSYSNCYQVEVKYELIPR 616
Cdd:COG1629 451 ---DLKPETSTNY--ELGLRYRLLDGRLSLSLALFYSDVDNeILSVPLPNDSGFSTYYTNAGKARSYGVELELSYQLTPG 525
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 617 LEATLAYRYNDVKTTINGDL------KRTPLTSRYKGLVNLSYFTNLKkwqFDFTTQFNGSGRLPeqggiADEYRVASRF 690
Cdd:COG1629 526 LSLNASYSYTDAKFDDDTDGsadldgNRLPGVPPLTANLGLTYEFPGG---WSLGLGVRYVGDRY-----LDDANTQGAP 597
|
650 660
....*....|....*....|....*....
gi 2485534494 691 DDFQIMNAQVTKYFRL-WSIYAGCENIGD 718
Cdd:COG1629 598 GGYTLVDLGAGYRFGDnLTLSLGVDNLFD 626
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
124-671 |
3.30e-28 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 120.63 E-value: 3.30e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 124 ITGEELCKAACCNLGESFETNASVDVSYaDAVTGAKQIQLLGLTGKYVQMMTENMP-NFRGLASLYGLTYIPgPWM-SAI 201
Cdd:cd01347 5 ITAEDIEKQPATSLADLLRRIPGVSVTR-GGGGGGSTISIRGFGPDRTLVLVDGLPlASSNYGRGVDLNTIP-PELiERV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 202 SVSKGTGSVINGYESMAGQISVDYKKPRDPELLSANVFTSSEGM-----YEFNSNFSIKFSDKWStmFLLHGDWMEEPHD 276
Cdd:cd01347 83 EVLKGPSSALYGSGAIGGVVNIITKRPTDEFGGSVTAGYGSDNSgssggGGFDVSGALADDGAFG--ARLYGAYRDGDGT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 277 GNKDGFLDMPEKTQYNVMNRWAYK--DDTWFLQFGGKFIDEERNGGQTTHGGHAQVDENYGLYKIG--------IDTRRY 346
Cdd:cd01347 161 IDGDGQADDSDEERYNVAGKLDWRpdDDTRLTLDAGYQDQDADGPGGTLPANGTGSSLGGGPSSNTngdrdwdyRDRYRK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 347 EAFLKLGYLmPQYENTSMAILVNYSdHTQDSYYGPKmYNAGQKSLFVNYIYQSIFGTNPSQMYSAGLSFNYdKYDEDFRD 426
Cdd:cd01347 241 RASLGLEHD-LNDTGWTLRANLSYS-YTDNDGDPLI-LNGGNNAAGGDLGRSGYSSERDTTQLGFDAGLNA-PFGTGPVA 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 427 PVFNYGedisTDFINMKREERVPGAFFQYTGEFLDqRFIVMAGLRYDYHNI--------------FGSIWTPRAHIMYKP 492
Cdd:cd01347 317 HTLTLG----VEYRREELDEKQTALYAQDTIELTD-DLTLTLGLRYDHYDQdskdtiaggttakkSYSHWSPSLGLVYKL 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 493 DEFTSIKATFGRGLRTPNILaeNSYLLASAANFYVNGellgkNPalldDLKME--DSWNFGAnvnrKFEvFGRTLNINLD 570
Cdd:cd01347 392 TDGLSLYASYSQGFRAPSLG--ELYGGGSHGGTAAVG-----NP----NLKPEksKQYELGL----KYD-PGDGLTLSAA 455
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 571 YYHTKFNDQVVVDNETAYNK-VNFYNLDGDSYSNCYQVEVKYELIPRLEATLAYRYNDVKTTINGDL---KRTPLTSRYK 646
Cdd:cd01347 456 LFRIDIKNEIVSTPTNTGLGlVTVYVNGGKARIRGVELEASYDLTDGLGLTGSYTYTDTEVKRTDGAttgNRLPGIPKHT 535
|
570 580
....*....|....*....|....*
gi 2485534494 647 GLVNLSYFTNLKKWQFDFTTQFNGS 671
Cdd:cd01347 536 ANLGLDYELPDEGLTAGGGVRYRGK 560
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
369-756 |
1.08e-23 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 105.24 E-value: 1.08e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 369 NYSDHTQDSYYGPKMYNAGQKSLFVNYIYQSIFGtnpsqMYSAGLSFNYDKYDEDFRDPvfnYGEDISTDFINMKREERV 448
Cdd:pfam00593 103 GAGDYLSDDRLYGLYGLDGDLELSLDLSHDLLLG-----VELRTAGLDYRRLDDDAYDP---YDPANPSSSSYSDTTTDS 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 449 PGAFFQYTGEFLDqRFIVMAGLRYDYHNIFG--------------SIWTPRAHIMYKPDEFTSIKATFGRGLRTPNILAE 514
Cdd:pfam00593 175 YGLYLQDNIKLTD-RLTLTLGLRYDHYSTDGddgngggdnfsrsySAFSPRLGLVYKPTDNLSLYASYSRGFRAPSLGEL 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 515 NSYLLASAANFYVNGellgkNPalldDLKMEDSWNFGANvnrkFEVFGRTLNINLDYYHTKFNDQVVVDNETAYNKVNFY 594
Cdd:pfam00593 254 YGSGSGGGGGAVAGG-----NP----DLKPETSDNYELG----LKYDDGRLSLSLALFYIDIKNLITSDPDGPGLGGTVY 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 595 NLD--GDSYSNCYQVEVKYELIPRLEATLAYRYNDVKTTINGDLKRTPL--TSRYKGLVNLSYFTNLKKWQFDFTTQFNG 670
Cdd:pfam00593 321 TYTnvGKARIRGVELELSGRLWGLGLSGGGYTYTDADDDADADDTGNPLpnVPRHTANLGLTYDFPLGGWGARLGARYVG 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 671 SGRLpeqggIADEYRVASRFDDFQIMNAQVT-KYFRLWSIYAGCENIGDFTQKNpivnshNPWSDTFDSSKVWGPlhGRK 749
Cdd:pfam00593 401 SGER-----RYGDAANTFKTPGYTLVDLSAGyRLNKNLTLRLGVNNLFDKYYKR------YYSSGGGNLGGYPGP--GRT 467
|
....*..
gi 2485534494 750 FYIGLRF 756
Cdd:pfam00593 468 FYLGLSY 474
|
|
| CarbopepD_reg_2 |
pfam13715 |
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, ... |
21-104 |
2.53e-16 |
|
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.
Pssm-ID: 433425 [Multi-domain] Cd Length: 88 Bit Score: 74.55 E-value: 2.53e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 21 IKGRVMEETEdGEvALPGANVYWVGTSKGSVSDANGEFKIKWEKVGK--LVVSFIGYQSDTIEVK-STDKFVTCTLRSGE 97
Cdd:pfam13715 1 ISGTVVDENT-GE-PLPGATVYVKGTTKGTVTDADGNFELKNLPAGTytLVVSFVGYKTQEKKVTvSNDNTLDVNFLLKE 78
|
90
....*....|
gi 2485534494 98 ---QLDEVSV 104
Cdd:pfam13715 79 dalLLDEVVV 88
|
|
| TonB-hemin |
TIGR01785 |
TonB-dependent heme/hemoglobin receptor family protein; This model represents the ... |
99-598 |
7.35e-15 |
|
TonB-dependent heme/hemoglobin receptor family protein; This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273807 [Multi-domain] Cd Length: 665 Bit Score: 78.59 E-value: 7.35e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 99 LDEVSVAARKQSTVMSTRGPLIEqLITGEELCKAACCNLGESFETNASVDVSYADAvTGAKQIQLLGLTGKYVQMMTENM 178
Cdd:TIGR01785 1 LDTVTVTATRTRQVLSEAPASVS-VISGEQIESKQANNLADALNTVPGVDVTGGGR-PPGQSINIRGLQDNRVLVVVDGA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 179 P-NFRGLASLYGLTYIPGPWMSAISVSKGTGSVINGYESMAGQISVDYKKPRDpeLL--------SANVFTSSEG-MYEF 248
Cdd:TIGR01785 79 RqNYQRGGAHNGSLFVDPELLKRIEIVKGPSSSLYGSGALGGVVAFRTKDAAD--LLrpgqlfggLAKLSYGSNNnSFGG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 249 NSNFSIKFSDKWStmFLLHGDW--MEEPHDGNKDGfldmPEKTQYNVMNRWAykDDTWFLQFGG--KFIDEERNGGQTTH 324
Cdd:TIGR01785 157 SVAVAGRLDDNLD--ALVAATYrdGGNYRNGNKEE----ATNSAYVQKNLLA--KLGWQLDDAQrlEFSYFTTEGSLDEA 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 325 GGHAQVDEN-YGL--YKIGIDTRRYEAFLKLGYLMPQ--YENTSMAilVNYSDHTQDSYygPKMYNAGQKSLFVNYIY-- 397
Cdd:TIGR01785 229 QNSGPGTEYvLGSssTLLASSTRDRSATLTYNWTPEDnpWLDATAS--LYYNRTENDND--RSARGVGREEGYQYTTYga 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 398 ----QSIFGTNPSQMYSAGLSFNYDKydedfrDPVFNYGEDISTD--FINMKREERVPGAFFQYTGEFLDQRFIVMAGLR 471
Cdd:TIGR01785 305 tlqnTSRFDVASWSTLTYGVDWMKDK------RRTESFDPNSVTTivPNPPSAKEYFFGLFLQDNIPLLDDRLTLSAGLR 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 472 YDYH-----NIFG--------SIWTPRAHIMYKPDEFTSIKATFGRGLRTPNIlaeNSYLLASAANFYVNGELLGKNPal 538
Cdd:TIGR01785 379 YDHYklspkTTADteavdrsySRWSPSLGLSYKPVDWLTLYASYSQGFRAPSI---DELYGTGDHPGTPGGYTFAPNP-- 453
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 539 ldDLKME--DSWNFGANVNRKFEVFGR-TLNINLDYYHTKFND-----QVVVDNETA--YNKVNFYNLDG 598
Cdd:TIGR01785 454 --NLKPEtsKTWELGANLSFDNLLLDNdQLQFKVAYFYNDVKDfidltIGVTDNVTAgmNNITQYVNIDG 521
|
|
| BtuB |
COG4206 |
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism]; |
122-318 |
5.74e-14 |
|
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism];
Pssm-ID: 443355 [Multi-domain] Cd Length: 276 Bit Score: 72.98 E-value: 5.74e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 122 QLITGEELCKAACCNLGESFETNASVDVSYADAVTGAKQIQLLGLTGKYVQMMTENMPNFRGLASLYGLTYIPGPWMSAI 201
Cdd:COG4206 20 TVIDAEELERSGATSLADALRRVPGVQVSSSGGPGSAASISIRGLGSNQTLVLIDGVPLNDPSLGGVDLSLIPPDDIERI 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 202 SVSKGTGSVINGYESMAGQISVDYKKPRDPELLSANVFTSSEGMYEFNSNFSIKfSDKWSTMFLLH-----GDWMEEPHD 276
Cdd:COG4206 100 EVLKGAASALYGSDAIGGVINITTKKGKKGFKGSVSASYGSFGTRRLSASLSGG-AGKFSYSLSASyrrsdGYRYNDPDL 178
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2485534494 277 GNKDGFldmpekTQYNVMNRWAYK-DDTWFLQFGGKFIDEERN 318
Cdd:COG4206 179 RNNDGY------ENTSLNARLGYKlGDNGSLSLSGGYSDSERG 215
|
|
| Fiu |
COG4774 |
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism]; |
410-671 |
1.30e-12 |
|
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism];
Pssm-ID: 443806 [Multi-domain] Cd Length: 639 Bit Score: 71.06 E-value: 1.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 410 SAGLSFNYDKYDE------------DFRDPVFNY-GEDISTDFINMKREERVPGAFFQYTGEFLDqRFIVMAGLRYD--- 473
Cdd:COG4774 305 LAGVEYSREDSDNarysgggtaptvNLYNPVYGApVTGPTLGGADNDSRTDTTGLYLQDTISLTD-RWSLLAGLRYDrfd 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 474 --YHNIFG---------SIWTPRAHIMYKPDEFTSIKATFGRGLrTPNIlaenSYLLASAANfyvngellgknpallDDL 542
Cdd:COG4774 384 tdYTDRTTgattssyddSAFSPRAGLVYKPTPNLSLYASYSTSF-NPGG----GAPSLSNAG---------------QAL 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 543 KMEDSWNF--GAnvnrKFEVFGRTLNINLDYYHTKFNDQVVVDNETAynkvNFYNLDGDSYSNCYQVEVKYELIPRLEAT 620
Cdd:COG4774 444 DPEKSRQYevGV----KWDLLDGRLSLTAALFRIEKTNVRTTDPANP----GVYVQTGEQRSRGVELEATGELTPGWSVL 515
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 2485534494 621 LAYRYNDVKTTINGDL----KRTPLTSRYKGLVNLSYFTNLKKWQFDFTTQFNGS 671
Cdd:COG4774 516 AGYTYLDAEITKSANAanvgNRLPNVPRHSASLWTTYDLPLPGLTLGGGVRYVGS 570
|
|
| OMP_RagA_SusC |
TIGR04056 |
TonB-linked outer membrane protein, SusC/RagA family; This model describes a distinctive clade ... |
19-112 |
2.02e-11 |
|
TonB-linked outer membrane protein, SusC/RagA family; This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 274948 [Multi-domain] Cd Length: 981 Bit Score: 67.62 E-value: 2.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 19 QTIKGRVMEETedGEvALPGANVYWVGTSKGSVSDANGEFKIKWEKVGKLVVSFIGYQSDTIEVKStDKFVTCTLRS-GE 97
Cdd:TIGR04056 1 ITVTGVVVDET--GE-PLIGASVVVKGTTNGTITDIDGNFSLKVPPGAVLVFSYIGYKTQEVKVKG-QKNLNITLKEdTQ 76
|
90
....*....|....*...
gi 2485534494 98 QLDEVSVAA---RKQSTV 112
Cdd:TIGR04056 77 ELDEVVVVGygtQKKKSL 94
|
|
| FhuE |
COG4773 |
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion ... |
411-653 |
7.95e-10 |
|
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism];
Pssm-ID: 443805 [Multi-domain] Cd Length: 692 Bit Score: 62.22 E-value: 7.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 411 AGLSFNYDKYDE--------DFRDPVFNYGEDISTDFINMKREERVPGAFFQYTGEFLDqRFIVMAGLRYDY-----HNI 477
Cdd:COG4773 366 VGADYSRYDSDSdsatagtiNIYNPVYGNLPEPDFDASDTDTTTRQTGLYAQDQISLTD-RLSLLLGGRYDWyetdsTNR 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 478 FG--------SIWTPRAHIMYKPDEFTSIKATFGRGLrTPNilaensyllasaANFYVNGELL----GKNpallddlkme 545
Cdd:COG4773 445 LGgsttsyddSAFTPRAGLVYDLTPGLSLYASYSESF-EPQ------------SGADNNGNPLdpetGKQ---------- 501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 546 dsWNFGAnvnrKFEVFGRTLNINLDYYHTKFNDQVVVDNETAynkvNFYNLDGDSYSNCYQVEVKYELIPRLEATLAYRY 625
Cdd:COG4773 502 --YEAGV----KGELFDGRLNATLAVFDITQKNVATTDPDNP----NFYVQVGEVRSRGVELELSGELTPGLNLIAGYTY 571
|
250 260 270
....*....|....*....|....*....|.
gi 2485534494 626 NDVKTTINGDL---KRTPLTSRYKGLVNLSY 653
Cdd:COG4773 572 TDAKITKDADAlegKRLTNVPRHTASLWTTY 602
|
|
| FecA |
COG4772 |
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism]; |
198-758 |
1.14e-09 |
|
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism];
Pssm-ID: 443804 [Multi-domain] Cd Length: 681 Bit Score: 61.87 E-value: 1.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 198 MSAISVSKGTGSVINGYESMAGQISVDYKKPRDPELLSANVFTSSEGMyeFNSNFSI-KFSDKWStmFLLHGDWMEepHD 276
Cdd:COG4772 126 MERIEVLRGAAALRYGPQTVGGAINFVTRTIPTAFGGELRVTGGSFGY--RRTHASVgGTVGNFG--YLVEYSRKR--GD 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 277 GNKD--GFldmpEKTQYNVMNRWAYKDDTWfLQFGGKFIDEERN--GGQTThgghAQVDEN----YGLYkIGIDTRRYEA 348
Cdd:COG4772 200 GFRDnsGF----DINDFNAKLGYRLSDRQE-LTLKFQYYDEDANtpGGLTD----AQFDADprqsYRPA-DQFDTRRTQL 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 349 FLKLGYLMPqyENTSMAILVNYSDHTQDSYYGPKMYNAGQKSLFV-----NYIYQSIFgTNPSQMYSAG-------LSFN 416
Cdd:COG4772 270 SLRYEHQLS--DNTTLTTTAYYNDFSRNWYIRQNTADPNTPGLGLrgnprGYRSYGIE-PRLTHRFELGgvphtleVGLR 346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 417 YDKYDEDFRDPVFNYGEDISTDFINMKREERVP--GAFFQYTGEFLDqRFIVMAGLRY-----DYHNIFG---------- 479
Cdd:COG4772 347 YHREEEDRKQYVNTYGQGRSGAGLRRDRRFSADalAAYAQNRFELTG-RLTLTPGLRYehirrDRTDRYStrtggddsgs 425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 480 ---SIWTPRAHIMYKPDEFTSIKATFGRGLRTPNilaensyllasaanfyvNGELLGKNPaLLDDLKMEDSWNfganvnr 556
Cdd:COG4772 426 nsySEFLPGLGLLYQLTDNLQLYANVSRGFEPPT-----------------FGDLAYGNG-GNPDLKPEKSWN------- 480
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 557 kFEV-----FGRTLNINLDYYHTKFNDQVVVDNETAYNKVNFYNLdGDSYSNCYQVEVKYELIP----RLEATLAYRYND 627
Cdd:COG4772 481 -YELgtrgrIGNGLSAEVALFYIDYDNELGSCSAAGGDRSTFTNA-GETRHQGLELALDYDLLKggglGLPLFAAYTYTD 558
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 628 vkTTINGDL------KRTPLTSRYKGLVNLSYftNLKKWQFDFTTQFNGS-------GRLPEQGGIADEYRVasrfddfq 694
Cdd:COG4772 559 --AEFTSDFgpvfagNRLPYVPRHQLTAGLGY--EHGGWTANLNGRYVSEqftdaanTVADGSFGKIPSYTV-------- 626
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2485534494 695 iMNAQVT-KYFRLWSIYAGCENIGDftqKNPIVNSHNPWSDTFDsskvwgPLHGRKFYIGLRFAL 758
Cdd:COG4772 627 -LDLSASyDFGKNLSLFAGVNNLFD---KRYIASRAPNYAAGIR------PGPPRTVYAGLRLKF 681
|
|
| PRK13524 |
PRK13524 |
FepA family TonB-dependent siderophore receptor; |
460-621 |
1.33e-08 |
|
FepA family TonB-dependent siderophore receptor;
Pssm-ID: 237410 [Multi-domain] Cd Length: 744 Bit Score: 58.50 E-value: 1.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 460 LDQRFIVMAGLRYDYHNIFGSIWTPRAHIMYKPDEFTSIKATFGRGLRTPNILAENS-YLLASAAN-FYVNGE----LLG 533
Cdd:PRK13524 443 LTDSTMLTPGLRFDHHSIVGNNWSPSLNLSQGLGDDFTLKMGIARAYKAPNLYQTNPnYILYSKGQgCYASAGngcyLQG 522
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 534 KnpallDDLKMEDSWNF--GanvnrkFEVFGRTLNINLDYYHTKFNDQVVVDNETAYNkvnfynlDGDSYSNCYQVE-VK 610
Cdd:PRK13524 523 N-----DDLKAETSVNKeiG------LEFKRDGWLAGLTWFRNDYRNKIEAGYVPVGT-------NSVGKTDIYQWEnVP 584
|
170
....*....|.
gi 2485534494 611 YELIPRLEATL 621
Cdd:PRK13524 585 KAVVEGLEGTL 595
|
|
| PRK13528 |
PRK13528 |
outer membrane receptor FepA; Provisional |
460-581 |
4.36e-08 |
|
outer membrane receptor FepA; Provisional
Pssm-ID: 237413 [Multi-domain] Cd Length: 727 Bit Score: 56.69 E-value: 4.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 460 LDQRFIVMAGLRYDYHNIFGSIWTPRAHIMYKPDEFTSIKATFGRGLRTPNILAENS-YLLASAAN---FYVNGE---LL 532
Cdd:PRK13528 435 PVPGTNLIPGLRFDYHSEFGSNWSPSLNLSQELGDYFKVKAGIARAFKAPNLYQSSEgYLLYSRGNgcpKDITSGgcyLV 514
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 2485534494 533 GKnpallDDLKMEDSWNFGANvnrkFEVFGRTLNINLDYYHTKFNDQVV 581
Cdd:PRK13528 515 GN-----KNLDPEISVNKEIG----LEFTVDDYHASVTYFRNDYQNKIV 554
|
|
| TonB-siderophor |
TIGR01783 |
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ... |
191-653 |
5.49e-08 |
|
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273805 [Multi-domain] Cd Length: 651 Bit Score: 56.27 E-value: 5.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 191 TYIPGPWM-SAISVSKGTGSVINGYESMAGQISVDYKKPRDPELLSANVFTSSEGMYEFNSNFSIKF--SDKWSTMFLL- 266
Cdd:TIGR01783 73 LAIVDPAMvERVEVLRGPASLLYGGSAPGGVINIVTKRPQDEPKGSVTFGAGTRSGYRTAFDLGGPLgaDGTFRGRLNGa 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 267 ---HGDWMEepHDGNKDGFLdmpeKTQYNvmnrWAYKDDTwFLQFGGKFIDEERNGGQ-------TTHGGHAQVDENYGL 336
Cdd:TIGR01783 153 rqdGDSFYD--GAGEETRLG----ATATD----WQLDDRT-LLRLGAYYQKERDRGGYgglpasgGTSGRDLSSDRYLGT 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 337 YK--IGIDTRRYEAFLKLGYLMPQYENTSMAILVNYSDHTQDSYYGPKMYNAG-------------QKSLFVNYIYQSIF 401
Cdd:TIGR01783 222 SSnrNYDDREYLSYGLSLEYQFNDVWTGKQNLRYSYFDTDSNQVQASGYSSDGglfgrsltvvnvkQDRVQIDAGLDGEF 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 402 GTNPSQ----MYSAGLSFNYDKYDEDFR--DPVFNYGED--ISTDFINMKREERVPGAFFQYTG-----EFLDQRFIVMA 468
Cdd:TIGR01783 302 ETGPIEhdllLGVSYGQRTTNRFNNTGYpsDNIYSLTATssARTDIGDSPKDRALSSTTKALNGvalqrILLADKWTLTL 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 469 GLRYDYHNIFGSI-------------WTPRAHIMYKPDEFTSIKATFGRGLRTPNilaensYLLASAANfyvngellgkn 535
Cdd:TIGR01783 382 GGRYDSVDVKSNNgvagstgkrddsqFTPSLGVAYKPTDDWSLYASYAESFKPGG------YYPKGAGN----------- 444
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 536 paLLDDLKMEDSWN--FGAnvnrKFEvFGRTLNINLDYYHTKFNDQVVVDNETAYNKVNfynlDGDSYSNCYQVEVKYEL 613
Cdd:TIGR01783 445 --SGDILEPEKGKNyeLGV----RYD-LGDSLLATAALFRITKDNQLVQDPVNGTFSVN----AGKTRNRGVELEARGYL 513
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 2485534494 614 IPRLEATLAYRYNDVKTT----INGDLKRTPLTSRYKGLVNLSY 653
Cdd:TIGR01783 514 TPGLSLSAGYTYTDAEFTedtnGDTQGNTVPFVPKHTASLWASY 557
|
|
| PRK10064 |
PRK10064 |
catecholate siderophore receptor CirA; Provisional |
469-718 |
3.23e-07 |
|
catecholate siderophore receptor CirA; Provisional
Pssm-ID: 236646 [Multi-domain] Cd Length: 663 Bit Score: 53.74 E-value: 3.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 469 GLRYDYHNIFGSIWTPRAHIMYKPDEFTSIKATFGRGLRTPNILaENSYLLASAA---NFYVNGEllgknpallDDLKME 545
Cdd:PRK10064 381 GVRMDDHETYGDHWSPRAYLVYNATDTVTVKGGWATAFKAPSLL-QLSPDWTSNScrgACKIVGS---------PDLKPE 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 546 --DSWNFG----------ANVNRKFEVF----------GRTLNINLDYYHTKFNDQVVVDNETAYNKVNFYNLDgDSYSN 603
Cdd:PRK10064 451 tsESWELGlyymgeegwlEGVESSVTVFrndvddrisiSRTSDVNAAPGYQNFVGFETNGRGRRVPVFRYYNVN-KARIQ 529
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 604 CYQVEVKYELIPRLEATLAYRYNDVKTTINGDLKRTPLTSRYKGLVNLSY-FTNLKKWQFDFTTQFNGSGR-LPEQGGIA 681
Cdd:PRK10064 530 GVETELKIPFNDEWKLSLNYTYNDGRDVSNGENKPLSDLPFHTANGTLDWkPLALEDWSFYVSGNYTGQKRaDSATAKTP 609
|
250 260 270
....*....|....*....|....*....|....*...
gi 2485534494 682 DEYRVasrfddFQIMNA-QVTKYFRLwsiYAGCENIGD 718
Cdd:PRK10064 610 GGYTI------WNTGAAwQVTKDVKL---RAGVLNLGD 638
|
|
| PRK13486 |
PRK13486 |
TonB-dependent receptor; |
464-650 |
5.67e-06 |
|
TonB-dependent receptor;
Pssm-ID: 139606 [Multi-domain] Cd Length: 696 Bit Score: 50.02 E-value: 5.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 464 FIVMAGLRYDYHNIFGSIWTPRAHIMYKPDEFTSIKATFGRGLRTPNILAENSYLLASAANFYVNgeLLGkNPalldDLK 543
Cdd:PRK13486 399 LALTAGSRYEHHEQFGGHFSPRAYLVWDVADAWTLKGGVTTGYKAPRMGQLHKGISGVSGQGKTN--LLG-NP----DLK 471
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 544 MEDSWNFGANVnrkFEVFGRTLNINLDYYHTKFNDQVVV----DNETAYNKVNFYNLDGDSYSNCYQVevkyeLIPRLEA 619
Cdd:PRK13486 472 PEESVSYEAGV---YYDNPAGLNANVTGFMTDFSNKIVSysinDNTNSYVNSGKARLHGVEFAGTLPL-----WSEDVTL 543
|
170 180 190
....*....|....*....|....*....|.
gi 2485534494 620 TLAYRYNDVKTTiNGDLKRTPLTSRYKGLVN 650
Cdd:PRK13486 544 SLNYTWTRSEQR-DGDNKGAPLSYTPEHMVN 573
|
|
| PRK13513 |
PRK13513 |
ligand-gated channel protein; |
358-580 |
1.64e-04 |
|
ligand-gated channel protein;
Pssm-ID: 184104 [Multi-domain] Cd Length: 659 Bit Score: 45.14 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 358 QYENTSMAILVN--YSDHTQDSYYG-PKMYNAGQKSLFVNYIY--QSIFGTNpSQMYSAGLSFNYDK-YDEDFRDPVFNy 431
Cdd:PRK13513 277 QYDRNNYAITHNgyYDFGNSTSYIQrDETRNPSRQMKSVDTIFntQTSFLLD-DHTLSLGGQYRYEElYDKGNQLPSAS- 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 432 gedistdfiNMKREERVPGAFFQYTGEFLDQRFIVMAGLRYDYHNIFGSIWTPRAHIMYKPDEFTSIKATFGRGLRTPNi 511
Cdd:PRK13513 355 ---------DLNKLTRWSWALFAEDEWQMTNDFALTGGIRMDQDQNYGTHWTPRLYGVWHLADQWTLKGGVSTGYRSPD- 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 512 laensyLLASAANF-------YVNGELLGkNPalldDLKMEDS--------WNFGANvnrkfevfgrtLNINLDYYHTKF 576
Cdd:PRK13513 425 ------LRQATDNWgqltgggGLPALILG-NS----DLKPEKSisqeigilWDNQEN-----------LNASVTLFNTDF 482
|
....
gi 2485534494 577 NDQV 580
Cdd:PRK13513 483 KDKI 486
|
|
| PRK13484 |
PRK13484 |
IreA family TonB-dependent siderophore receptor; |
459-671 |
4.28e-04 |
|
IreA family TonB-dependent siderophore receptor;
Pssm-ID: 139605 [Multi-domain] Cd Length: 682 Bit Score: 43.84 E-value: 4.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 459 FLDQRFIVM------AGLRYDYHNIFGSIWTPRAHIMYK-PDEFTsIKATFGRGLRTPNILAENSYLlasaanfyvnGEL 531
Cdd:PRK13484 388 FIENEYAATdslaltGGLRLDNHEIYGSYWNPRLYAVYNlTDNLT-LKGGIAKAFRAPSIREVSPGF----------GTL 456
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 532 LGKNPALL---DDLKMEDSWN------------FGANVNrkfeVFGRTLNINLDYYHTKFNDQVVVDNETAYNKVNFYNL 596
Cdd:PRK13484 457 TQGGASIMygnRDLKPETSVTeeigiiysndsgFSASAT----LFNTDFKNKLTSYDIGTKDPVTGLNTFIYDNVGEANI 532
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2485534494 597 DGDSYSNCYQVEVKYELIPRLEATLAYRYNDVKTTINGDLKRTPL--TSRYKGLVNLsyftnlkKWQFDFTTQFNGS 671
Cdd:PRK13484 533 RGVELATQIPVYDKWHVSANYTFTDSRRKSDDESLNGKSLKGEPLerTPRHAANAKL-------EWDYTQDITFYSS 602
|
|
| PRK13483 |
PRK13483 |
ligand-gated channel protein; |
358-652 |
4.69e-04 |
|
ligand-gated channel protein;
Pssm-ID: 184080 [Multi-domain] Cd Length: 660 Bit Score: 43.61 E-value: 4.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 358 QYENTSMAILVN--YSDHTQDSYYGPKMY-NAGQKSLFVNYIYQS--IFGTNPSQMYSAGLSFNydkyDEDFRDPVFNYG 432
Cdd:PRK13483 286 EYERSTVSLSHTgrWDFGTSDTYIQHEEFdNKSREMKIKNTDFQSslVAPLGQEHTLTFGAAYN----HQDLTDETSNQI 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 433 EDIStdfinmkREERVPGAFFQYTGEFLDQRFIVMAGLRYDYHNIFGSIWTPRAHIMYKPDEFTSIKATFGRGLRTPNIL 512
Cdd:PRK13483 362 SDLT-------DISRTQWAVFSEDEWRIADDFALTGGLRLDHDENFGGHVSPRVYGVWNLAPSWTVKGGVSTGFRAPSLR 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 513 AensyLLASAANFYVNGELLGkNPalldDLKMEDSwnfganVNRKFEVF---GRTLNINLDYYHTKFNDQVV-VD----- 583
Cdd:PRK13483 435 Q----TTPDWGQVSRGGNIYG-NP----DLKPETS------LNKELGLYydlGSGLTASLTVFYNEFKDKITrVAcpatq 499
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2485534494 584 -----NETAYNKVNFYNLDgDSYSNCYQVEVKYELIPRLEATLAYRYNDV--KTtinGDLKRTPLTSRYKGLVNLS 652
Cdd:PRK13483 500 ctdgpNQFGADPTTYVNID-EAVTQGVEASLSYPITSTLSLSGNYTYTDSeqKS---GAYKGSPLNQLPKHLFQAS 571
|
|
| CarboxypepD_reg |
pfam13620 |
Carboxypeptidase regulatory-like domain; |
20-81 |
5.10e-04 |
|
Carboxypeptidase regulatory-like domain;
Pssm-ID: 433354 [Multi-domain] Cd Length: 81 Bit Score: 39.57 E-value: 5.10e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2485534494 20 TIKGRVMEETedGEVaLPGANVY----WVGTSKGSVSDANGEFKIKWEKVG--KLVVSFIGYQSDTIE 81
Cdd:pfam13620 1 TISGTVTDPS--GAP-VPGATVTvtntDTGTVRTTTTDADGRYRFPGLPPGtyTVTVSAPGFKTATRT 65
|
|
| Plug |
pfam07715 |
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently ... |
124-219 |
7.52e-04 |
|
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors. It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.
Pssm-ID: 462243 [Multi-domain] Cd Length: 107 Bit Score: 39.56 E-value: 7.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2485534494 124 ITGEELCKAACCNLGESFETNASVDVSYADAvTGAKQIQLLGLTGKYVQMMTENMPNFRGLASLYGLTYIPGPWMSAISV 203
Cdd:pfam07715 12 VTAEDIEDQGATNLADALRGVPGVSVSSGGG-GGGSSISIRGFGSNRVLVLVDGVPLNSGGGGSVDLNSIDPEDIERVEV 90
|
90
....*....|....*.
gi 2485534494 204 SKGTGSVINGYESMAG 219
Cdd:pfam07715 91 LKGPASALYGSGAIGG 106
|
|
| |
