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Conserved domains on  [gi|2468263795|ref|WP_276680659|]
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T9SS type A sorting domain-containing protein [Empedobacter brevis]

Protein Classification

T9SS type A sorting domain-containing protein( domain architecture ID 16073716)

T9SS type A sorting domain-containing protein may function in protein secretion; the conserved C-terminal domain functions as an outer membrane translocation signal for export of virulence factors to the cell surface; similar to Formosa agariphila endo-acting ulvan lyase involved in ulvan degradation

Gene Ontology:  GO:0005576
PubMed:  24007199

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Por_Secre_tail pfam18962
Secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, ...
 239-307 3.18e-14

Secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber have on average twenty or more copies of this C-terminal domain, associated with sorting to the outer membrane and covalent modification. This domain targets proteins to type IX secretion systems and is secreted then cleaved off by a C-terminal signal peptidease. Based on similarity to other families it is likely that this domain adopts an immunoglobulin like fold.


:

Pssm-ID: 436869 [Multi-domain]  Cd Length: 75  Bit Score: 66.48  E-value: 3.18e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2468263795 239 VYPNPATTEVNIKLDGTKVADVTVA--DVTGRVIPVKFSKDG----KVDTSKLSSGVYFLRVKDDKGVTrIQKII 307
Cdd:pfam18962   1 IYPNPAKDVLNISLKNSNSSNLNISiyDILGKLVKSNSKTNGnntkTIDVSNLSSGIYFVKINSGNGST-TKKLI 74
 
Name Accession Description Interval E-value
Por_Secre_tail pfam18962
Secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, ...
 239-307 3.18e-14

Secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber have on average twenty or more copies of this C-terminal domain, associated with sorting to the outer membrane and covalent modification. This domain targets proteins to type IX secretion systems and is secreted then cleaved off by a C-terminal signal peptidease. Based on similarity to other families it is likely that this domain adopts an immunoglobulin like fold.


Pssm-ID: 436869 [Multi-domain]  Cd Length: 75  Bit Score: 66.48  E-value: 3.18e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2468263795 239 VYPNPATTEVNIKLDGTKVADVTVA--DVTGRVIPVKFSKDG----KVDTSKLSSGVYFLRVKDDKGVTrIQKII 307
Cdd:pfam18962   1 IYPNPAKDVLNISLKNSNSSNLNISiyDILGKLVKSNSKTNGnntkTIDVSNLSSGIYFVKINSGNGST-TKKLI 74
Por_Secre_tail TIGR04183
Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, ...
 239-309 4.61e-13

Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.


Pssm-ID: 275036 [Multi-domain]  Cd Length: 72  Bit Score: 63.19  E-value: 4.61e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2468263795 239 VYPNPATTEVNI-KLDGTKVADVTVADVTGRVIPVK-FSKDGKVDTSKLSSGVYFLRVKDDKGVTrIQKIIKK 309
Cdd:TIGR04183   1 IYPNPAKGTLIIiLLSSSGKVKVEIYDLSGKLVKKTtLNNSNSIDLSNLSSGVYIVKITTGNGTI-TKKIIKK 72
T9SSA_dep_M36 NF038113
T9SS-dependent M36 family metallopeptidase; Members of this family have an M36 family ...
 226-309 1.47e-10

T9SS-dependent M36 family metallopeptidase; Members of this family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal T9SS type A sorting domain (see TIGR04131).


Pssm-ID: 468356 [Multi-domain]  Cd Length: 868  Bit Score: 61.98  E-value: 1.47e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468263795 226 TMGTVELGSSKLAVYPNPATTEVNIKLDGTKVADVTVA--DVTGRVI---PVKFSKDGKVDTSKLSSGVYFLRVKDDkGV 300
Cdd:NF038113  781 SLATNEFGANKFIIYPNPAKGEIFISFSNKDSGEVKVKvyDINGRLVlsdKVELTNTKTINTSGLQSGIYIVKIEGG-SK 859


                  ....*....
gi 2468263795 301 TRIQKIIKK 309
Cdd:NF038113  860 SYTEKLIVK 868
 
Name Accession Description Interval E-value
Por_Secre_tail pfam18962
Secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, ...
 239-307 3.18e-14

Secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber have on average twenty or more copies of this C-terminal domain, associated with sorting to the outer membrane and covalent modification. This domain targets proteins to type IX secretion systems and is secreted then cleaved off by a C-terminal signal peptidease. Based on similarity to other families it is likely that this domain adopts an immunoglobulin like fold.


Pssm-ID: 436869 [Multi-domain]  Cd Length: 75  Bit Score: 66.48  E-value: 3.18e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2468263795 239 VYPNPATTEVNIKLDGTKVADVTVA--DVTGRVIPVKFSKDG----KVDTSKLSSGVYFLRVKDDKGVTrIQKII 307
Cdd:pfam18962   1 IYPNPAKDVLNISLKNSNSSNLNISiyDILGKLVKSNSKTNGnntkTIDVSNLSSGIYFVKINSGNGST-TKKLI 74
Por_Secre_tail TIGR04183
Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, ...
 239-309 4.61e-13

Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.


Pssm-ID: 275036 [Multi-domain]  Cd Length: 72  Bit Score: 63.19  E-value: 4.61e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2468263795 239 VYPNPATTEVNI-KLDGTKVADVTVADVTGRVIPVK-FSKDGKVDTSKLSSGVYFLRVKDDKGVTrIQKIIKK 309
Cdd:TIGR04183   1 IYPNPAKGTLIIiLLSSSGKVKVEIYDLSGKLVKKTtLNNSNSIDLSNLSSGVYIVKITTGNGTI-TKKIIKK 72
T9SSA_dep_M36 NF038113
T9SS-dependent M36 family metallopeptidase; Members of this family have an M36 family ...
 226-309 1.47e-10

T9SS-dependent M36 family metallopeptidase; Members of this family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal T9SS type A sorting domain (see TIGR04131).


Pssm-ID: 468356 [Multi-domain]  Cd Length: 868  Bit Score: 61.98  E-value: 1.47e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2468263795 226 TMGTVELGSSKLAVYPNPATTEVNIKLDGTKVADVTVA--DVTGRVI---PVKFSKDGKVDTSKLSSGVYFLRVKDDkGV 300
Cdd:NF038113  781 SLATNEFGANKFIIYPNPAKGEIFISFSNKDSGEVKVKvyDINGRLVlsdKVELTNTKTINTSGLQSGIYIVKIEGG-SK 859


                  ....*....
gi 2468263795 301 TRIQKIIKK 309
Cdd:NF038113  860 SYTEKLIVK 868
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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