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Conserved domains on  [gi|2443763348|ref|WP_273305304|]
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tetratricopeptide repeat protein [Barnesiella viscericola]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 19590186)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  30708253|10517866
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Spy super family cl27809
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1-251 6.88e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG3914:

Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 61.16  E-value: 6.88e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2443763348   1 MEERHIPDSAIILYHQALKQldkAPNDtlkGDIYNRLGDLLLDHNLYETACDSYQQAvvvsqgLDDKSNLSHAYRGLGky 80
Cdd:COG3914    88 LQALGRYEEALALYRRALAL---NPDN---AEALFNLGNLLLALGRLEEALAALRRA------LALNPDFAEAYLNLG-- 153

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2443763348  81 HFLYKDRDsvlfyFEKPLQFFNQ-IKNQEEQSSVYNNLASAYKQQSNIDKALACNARALSLTRDEVKRLRNYavrgqLFA 159
Cdd:COG3914   154 EALRRLGR-----LEEAIAALRRaLELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL-----LFA 223

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2443763348 160 LQMQYDSALF-YLEQASHSRETSVKASAYFKLADLPEeagiADSLKYRYLQEAY--RLSDSIENSAVSHQIDRQEH--LR 234
Cdd:COG3914   224 LRQACDWEVYdRFEELLAALARGPSELSPFALLYLPD----DDPAELLALARAWaqLVAAAAAPELPPPPNPRDPDrkLR 299

                         250       260
                  ....*....|....*....|
gi 2443763348 235 I---TADLKEKSHTRLLVAI 251
Cdd:COG3914   300 IgyvSADFRRHAVGYLLEPL 319
CsgD COG2771
DNA-binding transcriptional regulator, CsgD family [Transcription];
257-407 2.30e-04

DNA-binding transcriptional regulator, CsgD family [Transcription];


:

Pssm-ID: 442052 [Multi-domain]  Cd Length: 188  Bit Score: 42.05  E-value: 2.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2443763348 257 AVLLLSVAVFLFYRRHLRRRNEQLFAHKWKKQEARAQENESRELQLIDIIRKVGEGCSRDFKATPAYSLWYPKISSGKES 336
Cdd:COG2771    18 LALLALLLLLLLAALLLLLALLLLAALLLLAAAAAALAAALAAALLLGLLLLLLIALLLLLLLLLALLLLLALLALLAAL 97

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2443763348 337 LSYDEQKQF-QTLVVKAFDPYLKQLSNVVPLTENDAFLCALIQLGFSTRECATCRGISNETIRSQRTRIRKK 407
Cdd:COG2771    98 LARLAALLLaLALAALLLAALARLLARAPGLTPREREVLRLLAEGLTLKEIARILGISERTVRTHLKRIYRK 169
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1-251 6.88e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 61.16  E-value: 6.88e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2443763348   1 MEERHIPDSAIILYHQALKQldkAPNDtlkGDIYNRLGDLLLDHNLYETACDSYQQAvvvsqgLDDKSNLSHAYRGLGky 80
Cdd:COG3914    88 LQALGRYEEALALYRRALAL---NPDN---AEALFNLGNLLLALGRLEEALAALRRA------LALNPDFAEAYLNLG-- 153

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2443763348  81 HFLYKDRDsvlfyFEKPLQFFNQ-IKNQEEQSSVYNNLASAYKQQSNIDKALACNARALSLTRDEVKRLRNYavrgqLFA 159
Cdd:COG3914   154 EALRRLGR-----LEEAIAALRRaLELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL-----LFA 223

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2443763348 160 LQMQYDSALF-YLEQASHSRETSVKASAYFKLADLPEeagiADSLKYRYLQEAY--RLSDSIENSAVSHQIDRQEH--LR 234
Cdd:COG3914   224 LRQACDWEVYdRFEELLAALARGPSELSPFALLYLPD----DDPAELLALARAWaqLVAAAAAPELPPPPNPRDPDrkLR 299

                         250       260
                  ....*....|....*....|
gi 2443763348 235 I---TADLKEKSHTRLLVAI 251
Cdd:COG3914   300 IgyvSADFRRHAVGYLLEPL 319
CsgD COG2771
DNA-binding transcriptional regulator, CsgD family [Transcription];
257-407 2.30e-04

DNA-binding transcriptional regulator, CsgD family [Transcription];


Pssm-ID: 442052 [Multi-domain]  Cd Length: 188  Bit Score: 42.05  E-value: 2.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2443763348 257 AVLLLSVAVFLFYRRHLRRRNEQLFAHKWKKQEARAQENESRELQLIDIIRKVGEGCSRDFKATPAYSLWYPKISSGKES 336
Cdd:COG2771    18 LALLALLLLLLLAALLLLLALLLLAALLLLAAAAAALAAALAAALLLGLLLLLLIALLLLLLLLLALLLLLALLALLAAL 97

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2443763348 337 LSYDEQKQF-QTLVVKAFDPYLKQLSNVVPLTENDAFLCALIQLGFSTRECATCRGISNETIRSQRTRIRKK 407
Cdd:COG2771    98 LARLAALLLaLALAALLLAALARLLARAPGLTPREREVLRLLAEGLTLKEIARILGISERTVRTHLKRIYRK 169
TPR_12 pfam13424
Tetratricopeptide repeat;
109-174 1.77e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.98  E-value: 1.77e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2443763348 109 EQSSVYNNLASAYKQQSNIDKALACNARALSLTR-----DEVKRLRNYAVRGQLFALQMQYDSALFYLEQA 174
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARrllgpDHPLTATTLLNLGRLYLELGRYEEALELLERA 71
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1-251 6.88e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 61.16  E-value: 6.88e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2443763348   1 MEERHIPDSAIILYHQALKQldkAPNDtlkGDIYNRLGDLLLDHNLYETACDSYQQAvvvsqgLDDKSNLSHAYRGLGky 80
Cdd:COG3914    88 LQALGRYEEALALYRRALAL---NPDN---AEALFNLGNLLLALGRLEEALAALRRA------LALNPDFAEAYLNLG-- 153

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2443763348  81 HFLYKDRDsvlfyFEKPLQFFNQ-IKNQEEQSSVYNNLASAYKQQSNIDKALACNARALSLTRDEVKRLRNYavrgqLFA 159
Cdd:COG3914   154 EALRRLGR-----LEEAIAALRRaLELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL-----LFA 223

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2443763348 160 LQMQYDSALF-YLEQASHSRETSVKASAYFKLADLPEeagiADSLKYRYLQEAY--RLSDSIENSAVSHQIDRQEH--LR 234
Cdd:COG3914   224 LRQACDWEVYdRFEELLAALARGPSELSPFALLYLPD----DDPAELLALARAWaqLVAAAAAPELPPPPNPRDPDrkLR 299

                         250       260
                  ....*....|....*....|
gi 2443763348 235 I---TADLKEKSHTRLLVAI 251
Cdd:COG3914   300 IgyvSADFRRHAVGYLLEPL 319
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 8-219 1.40e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 55.51  E-value: 1.40e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2443763348   8 DSAIILYHQALKQLDKAPndtlkgDIYNRLGDLLLDHNLYETACDSYQQAvvvsqgLDDKSNLSHAYRGLGKYHFLYKDR 87
Cdd:COG2956    59 DRAIRIHQKLLERDPDRA------EALLELAQDYLKAGLLDRAEELLEKL------LELDPDDAEALRLLAEIYEQEGDW 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2443763348  88 DSVLFYFEKplqffnQIKNQEEQSSVYNNLASAYKQQSNIDKALACNARALSLTRDEVkrlRNYAVRGQLFALQMQYDSA 167
Cdd:COG2956   127 EKAIEVLER------LLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCA---RALLLLAELYLEQGDYEEA 197

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2443763348 168 LFYLEQAshSRETSVKASAYFKLADLPEEAGIADSLKyRYLQEAYRLSDSIE 219
Cdd:COG2956   198 IAALERA--LEQDPDYLPALPRLAELYEKLGDPEEAL-ELLRKALELDPSDD 246
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
32-280 2.67e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 54.63  E-value: 2.67e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2443763348  32 DIYNRLGDLLLDHNLYETACDSYQQAvvvsqgLDDKSNLSHAYRGLGKYHFLYKDRDSVLFYFEKplqffnQIKNQEEQS 111
Cdd:COG0457     9 EAYNNLGLAYRRLGRYEEAIEDYEKA------LELDPDDAEALYNLGLAYLRLGRYEEALADYEQ------ALELDPDDA 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2443763348 112 SVYNNLASAYKQQSNIDKALACNARALSLTRDEVKRLRNyavRGQLFALQMQYDSALFYLEQASHSRETSvkASAYFKLA 191
Cdd:COG0457    77 EALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYN---LGLALLELGRYDEAIEAYERALELDPDD--ADALYNLG 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2443763348 192 DLPEEAGIADSLKYRYLQEAYRLSDSIENSAVSHQIDRQEHLRITADLKEKSHTRLLVAITICVVAVLLLSVAVFLFYRR 271
Cdd:COG0457   152 IALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLL 231


                  ....*....
gi 2443763348 272 HLRRRNEQL 280
Cdd:COG0457   232 ALRLAALAL 240
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
7-212 8.84e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 50.01  E-value: 8.84e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2443763348   7 PDSAIILYHQALKqldKAPNDtlkGDIYNRLGDLLLDHNLYETACDSYQQAvvvsqgLDDKSNLSHAYRGLGKYHFLYKD 86
Cdd:COG0457    58 YEEALADYEQALE---LDPDD---AEALNNLGLALQALGRYEEALEDYDKA------LELDPDDAEALYNLGLALLELGR 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2443763348  87 RDSVLFYFEKplqffnQIKNQEEQSSVYNNLASAYKQQSNIDKALACNARALSLTRDEVKRLRNYAVRGQLFALQMQYDS 166
Cdd:COG0457   126 YDEAIEAYER------ALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLAL 199

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 2443763348 167 ALFYLEQASHSRETSVKASAYFKLADLPEEAGIADSLKYRYLQEAY 212
Cdd:COG0457   200 LLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
CsgD COG2771
DNA-binding transcriptional regulator, CsgD family [Transcription];
257-407 2.30e-04

DNA-binding transcriptional regulator, CsgD family [Transcription];


Pssm-ID: 442052 [Multi-domain]  Cd Length: 188  Bit Score: 42.05  E-value: 2.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2443763348 257 AVLLLSVAVFLFYRRHLRRRNEQLFAHKWKKQEARAQENESRELQLIDIIRKVGEGCSRDFKATPAYSLWYPKISSGKES 336
Cdd:COG2771    18 LALLALLLLLLLAALLLLLALLLLAALLLLAAAAAALAAALAAALLLGLLLLLLIALLLLLLLLLALLLLLALLALLAAL 97

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2443763348 337 LSYDEQKQF-QTLVVKAFDPYLKQLSNVVPLTENDAFLCALIQLGFSTRECATCRGISNETIRSQRTRIRKK 407
Cdd:COG2771    98 LARLAALLLaLALAALLLAALARLLARAPGLTPREREVLRLLAEGLTLKEIARILGISERTVRTHLKRIYRK 169
COG3899 COG3899
Predicted ATPase [General function prediction only];
3-302 2.55e-04

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 43.69  E-value: 2.55e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2443763348    3 ERHIPDSAIILYHQALKQLDKAPNDTLKGDIYNRLGDLLLDHNLYETACDSYQQAV-------VVSQGLDDKSNLSHAYR 75
Cdd:COG3899    717 ARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALaaralaaLAALRHGNPPASARAYA 796

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2443763348   76 GLGkyHFLYKDRDSVLFYFEKPLQFFNQIKNQEEQSSVYNNLASAYKQQSNIDKALACNARALSLTRDEVKRLRNYAVRG 155
Cdd:COG3899    797 NLG--LLLLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALA 874

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2443763348  156 QLFALQMQYDSALFYLEQASHSRETSVKASAYFKLADLPEEAGIADSLKYRYLQEAYRLsDSIENSAVSHQIDRQEHLRI 235
Cdd:COG3899    875 AAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALAL-AAAAAAAAAAALAAAAAAAA 953

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2443763348  236 TADLKEKSHTRLLVAITICVVAVLLLSVAVFLFYRRHLRRRNEQLFAHKWKKQEARAQENESRELQL 302
Cdd:COG3899    954 LAAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALL 1020
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 8-210 2.67e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.41  E-value: 2.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2443763348   8 DSAIILYHQALKQLDKAPndtlkgDIYNRLGDLLLDHNLYETACDSYQQAvvvsqgLDDKSNLSHAYRGLGKYHFLYKDR 87
Cdd:COG2956    93 DRAEELLEKLLELDPDDA------EALRLLAEIYEQEGDWEKAIEVLERL------LKLGPENAHAYCELAELYLEQGDY 160

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2443763348  88 DSVLFYFEKplqffnQIKNQEEQSSVYNNLASAYKQQSNIDKALACNARALSLTRDevkRLRNYAVRGQLFALQMQYDSA 167
Cdd:COG2956   161 DEAIEALEK------ALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD---YLPALPRLAELYEKLGDPEEA 231

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2443763348 168 LFYLEQASHSRETSVKASAYFKLADLPEEAGIADSLKYRYLQE 210
Cdd:COG2956   232 LELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLRR 274
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 7-144 1.39e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.02  E-value: 1.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2443763348   7 PDSAIILYHQALKqldKAPNDTlkgDIYNRLGDLLLDHNLYETACDSYQQAVVVSqglddkSNLSHAYRGLGKYHFLYKD 86
Cdd:COG4783    20 YDEAEALLEKALE---LDPDNP---EAFALLGEILLQLGDLDEAIVLLHEALELD------PDEPEARLNLGLALLKAGD 87

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2443763348  87 RDSVLFYFEKPLqffnqiKNQEEQSSVYNNLASAYKQQSNIDKALACNARALSLTRDE 144
Cdd:COG4783    88 YDEALALLEKAL------KLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
104-174 1.69e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.99  E-value: 1.69e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2443763348 104 IKNQEEQSSVYNNLASAYKQQSNIDKALACNARALSLTRDEVKRLRNyavRGQLFALQMQYDSALFYLEQA 174
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYN---LGLAYLRLGRYEEALADYEQA 68
TPR_12 pfam13424
Tetratricopeptide repeat;
109-174 1.77e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.98  E-value: 1.77e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2443763348 109 EQSSVYNNLASAYKQQSNIDKALACNARALSLTR-----DEVKRLRNYAVRGQLFALQMQYDSALFYLEQA 174
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARrllgpDHPLTATTLLNLGRLYLELGRYEEALELLERA 71
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 73-198 7.44e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 36.71  E-value: 7.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2443763348  73 AYRGLGKYHFLYKDRDSVLFYFEKplqffnQIKNQEEQSSVYNNLASAYKQQSNIDKALACNARALSLTRDEVKRLRNYa 152
Cdd:COG4783     6 ALYALAQALLLAGDYDEAEALLEK------ALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNL- 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 2443763348 153 vrGQLFALQMQYDSALFYLEQASHSRETSvkASAYFKLADLPEEAG 198
Cdd:COG4783    79 --GLALLKAGDYDEALALLEKALKLDPEH--PEAYLRLARAYRALG 120
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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