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Conserved domains on  [gi|2310152146|ref|WP_261426891|]
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MULTISPECIES: cytochrome c [Serratia]

Protein Classification

c-type cytochrome( domain architecture ID 11449528)

c-type cytochrome is an electron carrier protein that contains one or more heme groups; similar to Thermus thermophilus cytochrome c-552, which is a monoheme basic protein that appears to function as an electron donor to cytochrome oxidase

CATH:  1.10.760.10
Gene Ontology:  GO:0020037|GO:0009055|GO:0046872
PubMed:  31252007|22723177|18568041|12594933|10647174|10395550
SCOP:  3000815

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
211-411 5.95e-16

Cytochrome c, mono- and diheme variants [Energy production and conversion];


:

Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 75.37  E-value: 5.95e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146 211 GASLGSWYAPNITADRQEGIGGWSEQELVAYLKTGRAEGRAQAAGPMAEAVEHSFQYLTDRQLQAIATYLKTVPSQGDER 290
Cdd:COG2010     1 GGLLGGALGALLGGGGLSDEGAGAAGAGGVAAAGAGLAGALVDGAAAAAALGAAAAAAAAAAALALALLLALLLAAAAAD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146 291 QGNSFSQAhynvehhlrginspnanhtLNSGEALYSGYCASCHQPDGSGSLNqAYPSLFNNSTTAASnPSNLIAVILQGV 370
Cdd:COG2010    81 APAADAEA-------------------LARGKALYEQNCAACHGADGKGGLG-AAPNLTDDALYGGD-PEALVETILNGR 139

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 2310152146 371 DRRVdgkhvlMPSFGagsyvGELTDKQVADIANFVLQKYGN 411
Cdd:COG2010   140 PGGA------MPAFG-----GQLSDEEIAALAAYLRSLSGN 169
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
57-284 2.43e-07

Cytochrome c, mono- and diheme variants [Energy production and conversion];


:

Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 50.72  E-value: 2.43e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146  57 GYGIASPMGTIYATNITPSVKYGIGGYSEAAFADVLRAGIRKDGAYLYPAMPYTAYTRLSDDEIH-ALYTYFMYGVAPVD 135
Cdd:COG2010     1 GGLLGGALGALLGGGGLSDEGAGAAGAGGVAAAGAGLAGALVDGAAAAAALGAAAAAAAAAAALAlALLLALLLAAAAAD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146 136 EPAkhqtdlpfpfnirlsmavwnrlyldnrrftpdlTKGEAWNEGAALVQgpAHCGTCHTPRNvlmaednsrflMGAsLG 215
Cdd:COG2010    81 APA---------------------------------ADAEALARGKALYE--QNCAACHGADG-----------KGG-LG 113

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2310152146 216 swYAPNITADRqegIGGWSEQELVAYLKTGRAEGRAQAAGPMaeavehsfqyLTDRQLQAIATYLKTVP 284
Cdd:COG2010   114 --AAPNLTDDA---LYGGDPEALVETILNGRPGGAMPAFGGQ----------LSDEEIAALAAYLRSLS 167
 
Name Accession Description Interval E-value
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
211-411 5.95e-16

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 75.37  E-value: 5.95e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146 211 GASLGSWYAPNITADRQEGIGGWSEQELVAYLKTGRAEGRAQAAGPMAEAVEHSFQYLTDRQLQAIATYLKTVPSQGDER 290
Cdd:COG2010     1 GGLLGGALGALLGGGGLSDEGAGAAGAGGVAAAGAGLAGALVDGAAAAAALGAAAAAAAAAAALALALLLALLLAAAAAD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146 291 QGNSFSQAhynvehhlrginspnanhtLNSGEALYSGYCASCHQPDGSGSLNqAYPSLFNNSTTAASnPSNLIAVILQGV 370
Cdd:COG2010    81 APAADAEA-------------------LARGKALYEQNCAACHGADGKGGLG-AAPNLTDDALYGGD-PEALVETILNGR 139

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 2310152146 371 DRRVdgkhvlMPSFGagsyvGELTDKQVADIANFVLQKYGN 411
Cdd:COG2010   140 PGGA------MPAFG-----GQLSDEEIAALAAYLRSLSGN 169
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 321-407 2.24e-10

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 57.16  E-value: 2.24e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146 321 GEALYSGYCASCHQPDGSGSlNQAYPSLFNNSTTAASNPSNLIAVILQGVDRRVDGKHVlMPSFGAGSYVGELTDKQVAD 400
Cdd:pfam00034   3 GKKLFAANCAACHGVNGEGA-GAGGPDLAGLAARYPGDALGAIRENKHAIGGGGVDRAG-GPPGTGMPAFDGLTDEEIAD 80


                  ....*..
gi 2310152146 401 IANFVLQ 407
Cdd:pfam00034  81 LVAYLLS 87
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
57-284 2.43e-07

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 50.72  E-value: 2.43e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146  57 GYGIASPMGTIYATNITPSVKYGIGGYSEAAFADVLRAGIRKDGAYLYPAMPYTAYTRLSDDEIH-ALYTYFMYGVAPVD 135
Cdd:COG2010     1 GGLLGGALGALLGGGGLSDEGAGAAGAGGVAAAGAGLAGALVDGAAAAAALGAAAAAAAAAAALAlALLLALLLAAAAAD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146 136 EPAkhqtdlpfpfnirlsmavwnrlyldnrrftpdlTKGEAWNEGAALVQgpAHCGTCHTPRNvlmaednsrflMGAsLG 215
Cdd:COG2010    81 APA---------------------------------ADAEALARGKALYE--QNCAACHGADG-----------KGG-LG 113

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2310152146 216 swYAPNITADRqegIGGWSEQELVAYLKTGRAEGRAQAAGPMaeavehsfqyLTDRQLQAIATYLKTVP 284
Cdd:COG2010   114 --AAPNLTDDA---LYGGDPEALVETILNGRPGGAMPAFGGQ----------LSDEEIAALAAYLRSLS 167
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
 314-406 5.05e-07

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 51.05  E-value: 5.05e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146 314 ANHTLNSGEALYSGYCASCHQPDGSGslNQAYPSLFNNSTTAASNPSNLIAVILQGVDRRVDGKHVL--MPSFGagsyvG 391
Cdd:TIGR00782 103 KQYARNAGAAIFRTWCAQCHGSGAGG--AKGFPNLLDNDWLWGGTLEGIHTTIKHGIRDPDDGDTYVgeMPAFG-----P 175

                          90
                  ....*....|....*
gi 2310152146 392 ELTDKQVADIANFVL 406
Cdd:TIGR00782 176 LLEEADIKDVASYVM 190
petJ CHL00183
cytochrome c553; Provisional
 318-408 7.84e-06

cytochrome c553; Provisional


Pssm-ID: 177085  Cd Length: 108  Bit Score: 44.77  E-value: 7.84e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146 318 LNSGEALYSGYCASCHqpdgSGSLNQAYPSLFNNSTTAASNPSNLIAVILQGVDrrvDGKHVlMPSFGagsyvGELTDKQ 397
Cdd:CHL00183   26 LDNGEQIFSANCAACH----AGGNNVIMPEKTLKKDALEANSMNSIEAITYQVT---NGKNA-MPAFG-----GRLSDED 92

                          90
                  ....*....|.
gi 2310152146 398 VADIANFVLQK 408
Cdd:CHL00183   93 IEDVANYVLSQ 103
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 29-128 2.12e-04

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 40.21  E-value: 2.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146  29 AKGQALAiASDCMACHTntqqqgkPFAGGYGIASPmgtiyaTNITPSVKYGIGGYSEAAFADVLRAGIRKDGAYLYPAMP 108
Cdd:pfam00034   1 ARGKKLF-AANCAACHG-------VNGEGAGAGGP------DLAGLAARYPGDALGAIRENKHAIGGGGVDRAGGPPGTG 66

                          90       100
                  ....*....|....*....|
gi 2310152146 109 YTAYTRLSDDEIHALYTYFM 128
Cdd:pfam00034  67 MPAFDGLTDEEIADLVAYLL 86
 
Name Accession Description Interval E-value
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
211-411 5.95e-16

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 75.37  E-value: 5.95e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146 211 GASLGSWYAPNITADRQEGIGGWSEQELVAYLKTGRAEGRAQAAGPMAEAVEHSFQYLTDRQLQAIATYLKTVPSQGDER 290
Cdd:COG2010     1 GGLLGGALGALLGGGGLSDEGAGAAGAGGVAAAGAGLAGALVDGAAAAAALGAAAAAAAAAAALALALLLALLLAAAAAD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146 291 QGNSFSQAhynvehhlrginspnanhtLNSGEALYSGYCASCHQPDGSGSLNqAYPSLFNNSTTAASnPSNLIAVILQGV 370
Cdd:COG2010    81 APAADAEA-------------------LARGKALYEQNCAACHGADGKGGLG-AAPNLTDDALYGGD-PEALVETILNGR 139

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 2310152146 371 DRRVdgkhvlMPSFGagsyvGELTDKQVADIANFVLQKYGN 411
Cdd:COG2010   140 PGGA------MPAFG-----GQLSDEEIAALAAYLRSLSGN 169
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 321-407 2.24e-10

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 57.16  E-value: 2.24e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146 321 GEALYSGYCASCHQPDGSGSlNQAYPSLFNNSTTAASNPSNLIAVILQGVDRRVDGKHVlMPSFGAGSYVGELTDKQVAD 400
Cdd:pfam00034   3 GKKLFAANCAACHGVNGEGA-GAGGPDLAGLAARYPGDALGAIRENKHAIGGGGVDRAG-GPPGTGMPAFDGLTDEEIAD 80


                  ....*..
gi 2310152146 401 IANFVLQ 407
Cdd:pfam00034  81 LVAYLLS 87
TsdA COG3258
Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion ...
 178-406 1.24e-09

Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion transport and metabolism];


Pssm-ID: 442489 [Multi-domain]  Cd Length: 216  Bit Score: 57.94  E-value: 1.24e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146 178 NEGAALVQGPAHCGTCHTPRNVLMaednsrFLMGASLGSWyapnitADRQEGIGGWSEQELVAYLKTGRaeGRAQAAgpm 257
Cdd:COG3258    13 RRGEELFTNGLSCASCHLDAGTKP------WGVAAAYPAY------RARNGKVVTLEDRINGCFTRSMN--GKPLPL--- 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146 258 aeavehsfqylTDRQLQAIATYLKTVpSQGDERQGNsfsqahyNVEHHLRGINSPNANHTLNSGEALYSGYCASCHQPDG 337
Cdd:COG3258    76 -----------DSAEMKALVAYLRWL-SRGLPVGVK-------LDGRGLPKLPKPAASADVERGKALYAERCASCHGADG 136

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2310152146 338 SGSLNQ----AYPSL-----FNNSTTAASnPSNLIAVIlqgvdrrvdgKHVLMPSFGAGSyvgeLTDKQVADIANFVL 406
Cdd:COG3258   137 EGQGRAdgqyGFPPLwggdsYNDGAGMAR-LGTLADFI----------KGRNMPLGKPGS----LSDDEAWDVAAYVR 199
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
316-405 3.87e-09

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 52.79  E-value: 3.87e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146 316 HTLNSGEALYSGYCASCHQPDGSGslnqayPSLFNNSTTAASnpsnLIAVILQGVDRrvdgkhvlMPSFGagsyvGELTD 395
Cdd:pfam13442   1 AAAAAGEALYAANCASCHGTGGAG------PSLAGRALPPEA----LVDIIRNGKGA--------MPAFG-----GDLSD 57

                          90
                  ....*....|
gi 2310152146 396 KQVADIANFV 405
Cdd:pfam13442  58 EELEALAAYL 67
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
57-284 2.43e-07

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 50.72  E-value: 2.43e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146  57 GYGIASPMGTIYATNITPSVKYGIGGYSEAAFADVLRAGIRKDGAYLYPAMPYTAYTRLSDDEIH-ALYTYFMYGVAPVD 135
Cdd:COG2010     1 GGLLGGALGALLGGGGLSDEGAGAAGAGGVAAAGAGLAGALVDGAAAAAALGAAAAAAAAAAALAlALLLALLLAAAAAD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146 136 EPAkhqtdlpfpfnirlsmavwnrlyldnrrftpdlTKGEAWNEGAALVQgpAHCGTCHTPRNvlmaednsrflMGAsLG 215
Cdd:COG2010    81 APA---------------------------------ADAEALARGKALYE--QNCAACHGADG-----------KGG-LG 113

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2310152146 216 swYAPNITADRqegIGGWSEQELVAYLKTGRAEGRAQAAGPMaeavehsfqyLTDRQLQAIATYLKTVP 284
Cdd:COG2010   114 --AAPNLTDDA---LYGGDPEALVETILNGRPGGAMPAFGGQ----------LSDEEIAALAAYLRSLS 167
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
 314-406 5.05e-07

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 51.05  E-value: 5.05e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146 314 ANHTLNSGEALYSGYCASCHQPDGSGslNQAYPSLFNNSTTAASNPSNLIAVILQGVDRRVDGKHVL--MPSFGagsyvG 391
Cdd:TIGR00782 103 KQYARNAGAAIFRTWCAQCHGSGAGG--AKGFPNLLDNDWLWGGTLEGIHTTIKHGIRDPDDGDTYVgeMPAFG-----P 175

                          90
                  ....*....|....*
gi 2310152146 392 ELTDKQVADIANFVL 406
Cdd:TIGR00782 176 LLEEADIKDVASYVM 190
petJ CHL00183
cytochrome c553; Provisional
 318-408 7.84e-06

cytochrome c553; Provisional


Pssm-ID: 177085  Cd Length: 108  Bit Score: 44.77  E-value: 7.84e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146 318 LNSGEALYSGYCASCHqpdgSGSLNQAYPSLFNNSTTAASNPSNLIAVILQGVDrrvDGKHVlMPSFGagsyvGELTDKQ 397
Cdd:CHL00183   26 LDNGEQIFSANCAACH----AGGNNVIMPEKTLKKDALEANSMNSIEAITYQVT---NGKNA-MPAFG-----GRLSDED 92

                          90
                  ....*....|.
gi 2310152146 398 VADIANFVLQK 408
Cdd:CHL00183   93 IEDVANYVLSQ 103
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
323-405 1.71e-05

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 43.56  E-value: 1.71e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146 323 ALYSGYCASCHQPDGSGSLNQAYPSLfnnsttAASNPSNLIAVILQGvdRRVDGKHVLMPSFGAGsyvgeLTDKQVADIA 402
Cdd:COG2863    19 KAYAAACAACHGADGEGNPGGGAPRL------AGQHAEYLVAQLKAF--RSGARKNGVMPAIAKG-----LSDEDIKALA 85


                  ...
gi 2310152146 403 NFV 405
Cdd:COG2863    86 AYI 88
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
16-127 6.45e-05

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 41.64  E-value: 6.45e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146  16 SGFAAHAQDGDlIAKGQALAIAsdCMACHtntqqqGKPFAGGYGIASPMgtiyatnitpsvkygIGGYSEAAFADVLRAg 95
Cdd:COG2863     4 ALLAAPAAAGD-AARGKAYAAA--CAACH------GADGEGNPGGGAPR---------------LAGQHAEYLVAQLKA- 58

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2310152146  96 iRKDGAYLYPAMPYTAyTRLSDDEIHALYTYF 127
Cdd:COG2863    59 -FRSGARKNGVMPAIA-KGLSDEDIKALAAYI 88
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 29-128 2.12e-04

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 40.21  E-value: 2.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146  29 AKGQALAiASDCMACHTntqqqgkPFAGGYGIASPmgtiyaTNITPSVKYGIGGYSEAAFADVLRAGIRKDGAYLYPAMP 108
Cdd:pfam00034   1 ARGKKLF-AANCAACHG-------VNGEGAGAGGP------DLAGLAARYPGDALGAIRENKHAIGGGGVDRAGGPPGTG 66

                          90       100
                  ....*....|....*....|
gi 2310152146 109 YTAYTRLSDDEIHALYTYFM 128
Cdd:pfam00034  67 MPAFDGLTDEEIADLVAYLL 86
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
7-126 3.40e-04

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 41.47  E-value: 3.40e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146   7 ALAATLLLGSGFAAHAQDGDLIAKGQALAiASDCMACHTNTQQqgkpfaGGYGiaspmgtiYATNITPSVKYGiggYSEA 86
Cdd:COG2010    68 LLLALLLAAAAADAPAADAEALARGKALY-EQNCAACHGADGK------GGLG--------AAPNLTDDALYG---GDPE 129

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2310152146  87 AFADVLRAGIRKdgaylyPAMPytAY-TRLSDDEIHALYTY 126
Cdd:COG2010   130 ALVETILNGRPG------GAMP--AFgGQLSDEEIAALAAY 162
CytC552 COG4654
Cytochrome c551/c552 [Energy production and conversion];
29-128 3.56e-04

Cytochrome c551/c552 [Energy production and conversion];


Pssm-ID: 443692 [Multi-domain]  Cd Length: 88  Bit Score: 39.50  E-value: 3.56e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146  29 AKGQALAIASDCMACHtntqqqgkpfaggygiaspmgTIYATNITPSV-----KYgiggYSEAAFADVLRAGIRKDGAYL 103
Cdd:COG4654     5 AAGKALAKKSGCLACH---------------------AVDKKLVGPSYkdvakKY----KGKADAVAKLAKKIKKGGSGV 59

                          90       100
                  ....*....|....*....|....*
gi 2310152146 104 YPAMPYTAYTRLSDDEIHALYTYFM 128
Cdd:COG4654    60 WGDVPMPPHPQLSDAEAKALVKWIL 84
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
 301-405 4.70e-04

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 41.80  E-value: 4.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310152146 301 NVEHHLRGINS--PNANHTLNSGEALYSGYCASCHQPDGSGSLNQAYPSLFNNSTTAASNPSNLIAVIlqgvdrrVDGKH 378
Cdd:TIGR00782 184 DVASYVMSLSSgkPKDEALAAKGQELFADNCTTCHGEDGKGLQELGAPNLTDDVWLYGGDLKTITTTI-------TNGRG 256

                          90       100
                  ....*....|....*....|....*..
gi 2310152146 379 VLMPSFGagsyvGELTDKQVADIANFV 405
Cdd:TIGR00782 257 GVMPAWG-----PRLSEAQIKALAAYV 278
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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