|
Name |
Accession |
Description |
Interval |
E-value |
| AraC |
COG2207 |
AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; |
53-252 |
2.38e-21 |
|
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
Pssm-ID: 441809 [Multi-domain] Cd Length: 258 Bit Score: 90.22 E-value: 2.38e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310149684 53 IYLSTPEYAIWLPVNTEHESVAKSAIDYVILHVSPPLCQPLPSKPQTLRLNKIVKAVLADFSERLIGYPHTPQDQTLVTA 132
Cdd:COG2207 61 LLLLLLLGLLLLLLLLLLGLLLLALLALLLLVGLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLALLRALELLLLL 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310149684 133 LLEQLALSERFDSYLPLGSDDVVKIMTekmsaaphdLNTLTQWSGMLGLSERTLSRRFLAATGISFNEWKLRSKTLMAMT 212
Cdd:COG2207 141 LLLLLLLLLLLLLLLLLLLLLLLLLLL---------LLTLEELARELGLSPRTLSRLFKEETGTSPKQYLRELRLERAKR 211
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2310149684 213 LLQEGKA-VKYVASTLGYNDPSAFIAMFRRQTGQSPSGFLA 252
Cdd:COG2207 212 LLAETDLsISEIAYELGFSSQSHFSRAFKKRFGVTPSEYRK 252
|
|
| HTH_ARAC |
smart00342 |
helix_turn_helix, arabinose operon control protein; |
171-248 |
6.79e-21 |
|
helix_turn_helix, arabinose operon control protein;
Pssm-ID: 197666 [Multi-domain] Cd Length: 84 Bit Score: 84.14 E-value: 6.79e-21
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2310149684 171 TLTQWSGMLGLSERTLSRRFLAATGISFNEWKLRSKTLMAMTLLQEG-KAVKYVASTLGYNDPSAFIAMFRRQTGQSPS 248
Cdd:smart00342 3 TLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTdLSVTEIALRVGFSSQSYFSRAFKKLFGVTPS 81
|
|
| HTH_18 |
pfam12833 |
Helix-turn-helix domain; |
175-252 |
1.19e-19 |
|
Helix-turn-helix domain;
Pssm-ID: 432818 [Multi-domain] Cd Length: 81 Bit Score: 80.71 E-value: 1.19e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310149684 175 WSGMLGLSERTLSRRFLAATGISFNEWKLRSKTLMAMTLLQE--GKAVKYVASTLGYNDPSAFIAMFRRQTGQSPSGFLA 252
Cdd:pfam12833 1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLLEdtGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYRR 80
|
|
| cupin_NimR-like_N |
cd06124 |
AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain; This ... |
16-108 |
2.06e-17 |
|
AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain; This family contains mostly bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included in this family is Escherichia coli HTH-type transcriptional regulator NimR (also called YeaM) that negatively regulates expression of the nimT operon and its own expression. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.
Pssm-ID: 380379 [Multi-domain] Cd Length: 95 Bit Score: 75.30 E-value: 2.06e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310149684 16 FRNKSWPAGTQFPLQALPWGKLMYSMKGLAEINIENNIYLSTPEYAIWLPVNTEHESVAKSAIDYVILHVSPPLCQPLPS 95
Cdd:cd06124 3 ARAADYPAGHRTPWHSHPWGQLLYASSGVMTVETEDGRWLVPPQRAVWIPAGVEHSVRMLGAVELRSLYIDPEAAAGLPA 82
|
90
....*....|...
gi 2310149684 96 KPQTLRLNKIVKA 108
Cdd:cd06124 83 EPCVLAVSPLLRE 95
|
|
| ftrA |
PRK09393 |
transcriptional activator FtrA; Provisional |
164-248 |
2.21e-10 |
|
transcriptional activator FtrA; Provisional
Pssm-ID: 181818 [Multi-domain] Cd Length: 322 Bit Score: 59.98 E-value: 2.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310149684 164 AAPHDLNTLTQWSGMlglSERTLSRRFLAATGISFNEWKLRSKTLMAMTLLQEGKA-VKYVASTLGYNDPSAFIAMFRRQ 242
Cdd:PRK09393 232 AEPHTVASLAARAAM---SPRTFLRRFEAATGMTPAEWLLRERLARARDLLESSALsIDQIAERAGFGSEESLRHHFRRR 308
|
....*.
gi 2310149684 243 TGQSPS 248
Cdd:PRK09393 309 AATSPA 314
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| AraC |
COG2207 |
AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; |
53-252 |
2.38e-21 |
|
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
Pssm-ID: 441809 [Multi-domain] Cd Length: 258 Bit Score: 90.22 E-value: 2.38e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310149684 53 IYLSTPEYAIWLPVNTEHESVAKSAIDYVILHVSPPLCQPLPSKPQTLRLNKIVKAVLADFSERLIGYPHTPQDQTLVTA 132
Cdd:COG2207 61 LLLLLLLGLLLLLLLLLLGLLLLALLALLLLVGLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLALLRALELLLLL 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310149684 133 LLEQLALSERFDSYLPLGSDDVVKIMTekmsaaphdLNTLTQWSGMLGLSERTLSRRFLAATGISFNEWKLRSKTLMAMT 212
Cdd:COG2207 141 LLLLLLLLLLLLLLLLLLLLLLLLLLL---------LLTLEELARELGLSPRTLSRLFKEETGTSPKQYLRELRLERAKR 211
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2310149684 213 LLQEGKA-VKYVASTLGYNDPSAFIAMFRRQTGQSPSGFLA 252
Cdd:COG2207 212 LLAETDLsISEIAYELGFSSQSHFSRAFKKRFGVTPSEYRK 252
|
|
| HTH_ARAC |
smart00342 |
helix_turn_helix, arabinose operon control protein; |
171-248 |
6.79e-21 |
|
helix_turn_helix, arabinose operon control protein;
Pssm-ID: 197666 [Multi-domain] Cd Length: 84 Bit Score: 84.14 E-value: 6.79e-21
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2310149684 171 TLTQWSGMLGLSERTLSRRFLAATGISFNEWKLRSKTLMAMTLLQEG-KAVKYVASTLGYNDPSAFIAMFRRQTGQSPS 248
Cdd:smart00342 3 TLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTdLSVTEIALRVGFSSQSYFSRAFKKLFGVTPS 81
|
|
| HTH_18 |
pfam12833 |
Helix-turn-helix domain; |
175-252 |
1.19e-19 |
|
Helix-turn-helix domain;
Pssm-ID: 432818 [Multi-domain] Cd Length: 81 Bit Score: 80.71 E-value: 1.19e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310149684 175 WSGMLGLSERTLSRRFLAATGISFNEWKLRSKTLMAMTLLQE--GKAVKYVASTLGYNDPSAFIAMFRRQTGQSPSGFLA 252
Cdd:pfam12833 1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLLEdtGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYRR 80
|
|
| cupin_NimR-like_N |
cd06124 |
AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain; This ... |
16-108 |
2.06e-17 |
|
AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain; This family contains mostly bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included in this family is Escherichia coli HTH-type transcriptional regulator NimR (also called YeaM) that negatively regulates expression of the nimT operon and its own expression. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.
Pssm-ID: 380379 [Multi-domain] Cd Length: 95 Bit Score: 75.30 E-value: 2.06e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310149684 16 FRNKSWPAGTQFPLQALPWGKLMYSMKGLAEINIENNIYLSTPEYAIWLPVNTEHESVAKSAIDYVILHVSPPLCQPLPS 95
Cdd:cd06124 3 ARAADYPAGHRTPWHSHPWGQLLYASSGVMTVETEDGRWLVPPQRAVWIPAGVEHSVRMLGAVELRSLYIDPEAAAGLPA 82
|
90
....*....|...
gi 2310149684 96 KPQTLRLNKIVKA 108
Cdd:cd06124 83 EPCVLAVSPLLRE 95
|
|
| GlxA |
COG4977 |
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ... |
114-248 |
6.71e-15 |
|
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];
Pssm-ID: 444002 [Multi-domain] Cd Length: 318 Bit Score: 72.88 E-value: 6.71e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310149684 114 SERLIGYPH-TPQDQTLVTALLEQLALSERFDsylplgsdDVVKIMTEKMsAAPHDLNTLtqwSGMLGLSERTLSRRFLA 192
Cdd:COG4977 182 ARRLVVDPRrPGGQAQFSPLLVPLGHRDPRLA--------RAQAWMEANL-EEPLSVDEL---ARRAGMSPRTLERRFRA 249
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 2310149684 193 ATGISFNEWKLRSKTLMAMTLLQEG-KAVKYVASTLGYNDPSAFIAMFRRQTGQSPS 248
Cdd:COG4977 250 ATGTTPARYLQRLRLERARRLLETTdLSIEEIAAACGFGSASHFRRAFRRRFGVSPS 306
|
|
| AdaA |
COG2169 |
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), ... |
171-248 |
1.33e-10 |
|
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair];
Pssm-ID: 441772 [Multi-domain] Cd Length: 358 Bit Score: 60.84 E-value: 1.33e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2310149684 171 TLTQWSGMLGLSERTLSRRFLAATGISFNEWKLRSKTLMAMTLLQEGKAVKYVASTLGYNDPSAFIAMFRRQTGQSPS 248
Cdd:COG2169 102 SLEDLAARLGLSPRHLRRLFKAHTGVTPKAYARARRLLRARQLLQTGLSVTDAAYAAGFGSLSRFYEAFKKLLGMTPS 179
|
|
| ftrA |
PRK09393 |
transcriptional activator FtrA; Provisional |
164-248 |
2.21e-10 |
|
transcriptional activator FtrA; Provisional
Pssm-ID: 181818 [Multi-domain] Cd Length: 322 Bit Score: 59.98 E-value: 2.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310149684 164 AAPHDLNTLTQWSGMlglSERTLSRRFLAATGISFNEWKLRSKTLMAMTLLQEGKA-VKYVASTLGYNDPSAFIAMFRRQ 242
Cdd:PRK09393 232 AEPHTVASLAARAAM---SPRTFLRRFEAATGMTPAEWLLRERLARARDLLESSALsIDQIAERAGFGSEESLRHHFRRR 308
|
....*.
gi 2310149684 243 TGQSPS 248
Cdd:PRK09393 309 AATSPA 314
|
|
| PRK13500 |
PRK13500 |
HTH-type transcriptional activator RhaR; |
122-248 |
2.50e-07 |
|
HTH-type transcriptional activator RhaR;
Pssm-ID: 184091 [Multi-domain] Cd Length: 312 Bit Score: 50.87 E-value: 2.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310149684 122 HTPQDQTLVTALLEQLAL---SERF--DSYLPLGSDDVVKIMTEKMSAAPHDLNTLTQWSGMLGLSERTLSRRFLAATGI 196
Cdd:PRK13500 170 HVPFANEMAELLFGQLVMllnRHRYtsDSLPPTSSETLLDKLITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGM 249
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2310149684 197 SFNEWKLRSKTLMAMTLLQEGK-AVKYVASTLGYNDPSAFIAMFRRQTGQSPS 248
Cdd:PRK13500 250 TINQYLRQVRVCHAQYLLQHSRlLISDISTECGFEDSNYFSVVFTRETGMTPS 302
|
|
| PRK15185 |
PRK15185 |
transcriptional regulator HilD; Provisional |
162-255 |
1.17e-06 |
|
transcriptional regulator HilD; Provisional
Pssm-ID: 185107 [Multi-domain] Cd Length: 309 Bit Score: 48.84 E-value: 1.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310149684 162 MSAAPHDLNTLTQWSGMLGLSERTLSRRfLAATGISFNEWKLRSKTLMAMTLLQEGK-AVKYVASTLGYNDPSAFIAMFR 240
Cdd:PRK15185 215 ISSSPSRQWKLTDVADHIFMSTSTLKRK-LAEEGTSFSDIYLSARMNQAAKLLRIGNhNVNAVALKCGYDSTSYFIQCFK 293
|
90
....*....|....*.
gi 2310149684 241 RQTGQSPSGFL-AVSH 255
Cdd:PRK15185 294 KYFKTTPSTFIkMANH 309
|
|
| PRK13502 |
PRK13502 |
HTH-type transcriptional activator RhaR; |
182-248 |
1.41e-05 |
|
HTH-type transcriptional activator RhaR;
Pssm-ID: 184093 [Multi-domain] Cd Length: 282 Bit Score: 45.43 E-value: 1.41e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2310149684 182 SERTLSRRFLAATGISFNEWKLRSKTLMAMTLLQEGK-AVKYVASTLGYNDPSAFIAMFRRQTGQSPS 248
Cdd:PRK13502 205 SERVLRQQFRAQTGMTINQYLRQVRICHAQYLLQHSPlMISEISMQCGFEDSNYFSVVFTRETGMTPS 272
|
|
| PRK15044 |
PRK15044 |
transcriptional regulator SirC; Provisional |
176-251 |
1.71e-05 |
|
transcriptional regulator SirC; Provisional
Pssm-ID: 185004 [Multi-domain] Cd Length: 295 Bit Score: 45.41 E-value: 1.71e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2310149684 176 SGMLGLSERTLSRRfLAATGISFNEWKLRSKTLMAMTLLQEGKA-VKYVASTLGYNDPSAFIAMFRRQTGQSPSGFL 251
Cdd:PRK15044 215 AGKLFMSVSSLKRK-LAAEEVSFSKIYLDARMNQAIKLLRMGAGnISQVATMCGYDTPSYFIAIFKRHFKITPLSFM 290
|
|
| PRK13501 |
PRK13501 |
HTH-type transcriptional activator RhaR; |
129-250 |
2.49e-05 |
|
HTH-type transcriptional activator RhaR;
Pssm-ID: 184092 [Multi-domain] Cd Length: 290 Bit Score: 44.51 E-value: 2.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310149684 129 LVTALLEQLALSERFDSY-------LPLGSD-DVVKIMTEKMSAAPHDLNTLTQWSGmlgLSERTLSRRFLAATGISFNE 200
Cdd:PRK13501 147 LTEVLLLQLAIVLKRHRYraeqahlLPDGEQlDLIMSALQQSLGAYFDMADFCHKNQ---LVERSLKQLFRQQTGMSISH 223
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2310149684 201 WKLRSKTLMAMTLLQEGKA-VKYVASTLGYNDPSAFIAMFRRQTGQSPSGF 250
Cdd:PRK13501 224 YLRQIRLCHAKCLLRGSEHrISDIAARCGFEDSNYFSAVFTREAGMTPRDY 274
|
|
| PRK10572 |
PRK10572 |
arabinose operon transcriptional regulator AraC; |
171-250 |
1.19e-03 |
|
arabinose operon transcriptional regulator AraC;
Pssm-ID: 236717 [Multi-domain] Cd Length: 290 Bit Score: 39.57 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310149684 171 TLTQWSGMLGLSERTLSRRFLAATGISFNEWKLRSKTLMAMTLLQE-GKAVKYVASTLGYNDPSAFIAMFRRQTGQSPSG 249
Cdd:PRK10572 201 DIESVAQHVCLSPSRLAHLFRQQLGISVLRWREDQRISRAKLLLQTtRMPIATIGRNVGYDDQLYFSRVFKKCTGASPSE 280
|
.
gi 2310149684 250 F 250
Cdd:PRK10572 281 F 281
|
|
| PRK10219 |
PRK10219 |
superoxide response transcriptional regulator SoxS; |
169-250 |
2.08e-03 |
|
superoxide response transcriptional regulator SoxS;
Pssm-ID: 182314 [Multi-domain] Cd Length: 107 Bit Score: 36.83 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310149684 169 LNTLTQW--------------SGMLGLSERTLSRRFLAATGISFNEW-KLRSKTLMAMTLLQEGKAVKYVASTLGYNDPS 233
Cdd:PRK10219 7 IQTLIAWidehidqplnidvvAKKSGYSKWYLQRMFRTVTHQTLGDYiRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQ 86
|
90
....*....|....*..
gi 2310149684 234 AFIAMFRRQTGQSPSGF 250
Cdd:PRK10219 87 TFSRVFRRQFDRTPSDY 103
|
|
| PRK09978 |
PRK09978 |
DNA-binding transcriptional regulator GadX; Provisional |
170-250 |
9.66e-03 |
|
DNA-binding transcriptional regulator GadX; Provisional
Pssm-ID: 137624 [Multi-domain] Cd Length: 274 Bit Score: 36.83 E-value: 9.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2310149684 170 NTLTQWSGMLGLSERTLS----RRFLAATGISFNEWKLRSKTLMAMTLLQ-EGKAVKYVASTLGYNDPSAFIAMFRRQTG 244
Cdd:PRK09978 154 NIAHEWTLARIASELLMSpsllKKKLREEETSYSQLLTECRMQRALQLIViHGFSIKRVAVSCGYHSVSYFIYVFRNYYG 233
|
....*.
gi 2310149684 245 QSPSGF 250
Cdd:PRK09978 234 MTPTEY 239
|
|
|