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Conserved domains on  [gi|2283740655|ref|WP_257146918|]
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lysozyme family protein, partial [Bacillus toyonensis]

Protein Classification

lysozyme family protein( domain architecture ID 63)

lysozyme family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Lyz-like super family cl00222
lysozyme-like domains; This family contains several members, including soluble lytic ...
 3-67 8.57e-28

lysozyme-like domains; This family contains several members, including soluble lytic transglycosylases (SLT), goose egg-white lysozymes (GEWL), hen egg-white lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, chitosanases, and pesticin. Typical members are involved in the hydrolysis of beta-1,4- linked polysaccharides.


The actual alignment was detected with superfamily member cd16891:

Pssm-ID: 469668 [Multi-domain]  Cd Length: 151  Bit Score: 96.90  E-value: 8.57e-28
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2283740655   3 YELTLKKELEKYNLGEKTAVLLGIMYQESRGEGNDPMQSSESLGLKPNEIQETSLSIKQGVKHFA 67
Cdd:cd16891     1 YRPLVEKEAKKYGIPEYVPLILAIIMQESGGKGPDIMQSSESAGLPPNTITDPEESIEQGVKYFA 65
 
Name Accession Description Interval E-value
CwlT-like cd16891
CwlT-like N-terminal lysozyme domain and similar domains; CwlT is a bifunctional cell wall ...
 3-67 8.57e-28

CwlT-like N-terminal lysozyme domain and similar domains; CwlT is a bifunctional cell wall hydrolase containing an N-terminal lysozyme domain and a C-terminal NlpC/P60 endopeptidase domain (gamma-d-D-glutamyl-L-diamino acid endopeptidase), and has been implicated in the spread of transposons. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).


Pssm-ID: 381612 [Multi-domain]  Cd Length: 151  Bit Score: 96.90  E-value: 8.57e-28
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2283740655   3 YELTLKKELEKYNLGEKTAVLLGIMYQESRGEGNDPMQSSESLGLKPNEIQETSLSIKQGVKHFA 67
Cdd:cd16891     1 YRPLVEKEAKKYGIPEYVPLILAIIMQESGGKGPDIMQSSESAGLPPNTITDPEESIEQGVKYFA 65
Lysozyme_like pfam13702
Lysozyme-like;
1-67 6.12e-26

Lysozyme-like;


Pssm-ID: 433415 [Multi-domain]  Cd Length: 165  Bit Score: 92.79  E-value: 6.12e-26
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2283740655   1 LQYELTLKKELEKYNLGEKTAVLLGIMYQESRGEGNDPMQSSESLGLKPNEIQETSLSIKQGVKHFA 67
Cdd:pfam13702   5 LAYQPMVEKEAKEQGIPEYVPLILAIIYQESKGKGGDVMQSSESLGGPPNTITDPEESIKQGVKYLA 71
 
Name Accession Description Interval E-value
CwlT-like cd16891
CwlT-like N-terminal lysozyme domain and similar domains; CwlT is a bifunctional cell wall ...
 3-67 8.57e-28

CwlT-like N-terminal lysozyme domain and similar domains; CwlT is a bifunctional cell wall hydrolase containing an N-terminal lysozyme domain and a C-terminal NlpC/P60 endopeptidase domain (gamma-d-D-glutamyl-L-diamino acid endopeptidase), and has been implicated in the spread of transposons. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).


Pssm-ID: 381612 [Multi-domain]  Cd Length: 151  Bit Score: 96.90  E-value: 8.57e-28
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2283740655   3 YELTLKKELEKYNLGEKTAVLLGIMYQESRGEGNDPMQSSESLGLKPNEIQETSLSIKQGVKHFA 67
Cdd:cd16891     1 YRPLVEKEAKKYGIPEYVPLILAIIMQESGGKGPDIMQSSESAGLPPNTITDPEESIEQGVKYFA 65
Lysozyme_like pfam13702
Lysozyme-like;
1-67 6.12e-26

Lysozyme-like;


Pssm-ID: 433415 [Multi-domain]  Cd Length: 165  Bit Score: 92.79  E-value: 6.12e-26
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2283740655   1 LQYELTLKKELEKYNLGEKTAVLLGIMYQESRGEGNDPMQSSESLGLKPNEIQETSLSIKQGVKHFA 67
Cdd:pfam13702   5 LAYQPMVEKEAKEQGIPEYVPLILAIIYQESKGKGGDVMQSSESLGGPPNTITDPEESIKQGVKYLA 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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