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Conserved domains on  [gi|2280525188|ref|WP_256395406|]
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SHOCT domain-containing protein [Halohasta litorea]

Protein Classification

SHOCT domain-containing protein( domain architecture ID 10790219)

SHOCT (short C-terminal) domain-containing protein

PubMed:  23451277

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TM0315 COG3462
Uncharacterized protein, contains short C-terminal (SHOCT) domain [Function unknown];
65-115 1.50e-14

Uncharacterized protein, contains short C-terminal (SHOCT) domain [Function unknown];


:

Pssm-ID: 442685  Cd Length: 80  Bit Score: 63.39  E-value: 1.50e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2280525188  65 VAIPVYIVYAL-----LDRSATETETRPLSVLRERYARGELTDEEFEQRRKQLEES 115
Cdd:COG3462    25 VLIVYLLVRLLrgrggGPSDGGSEEDSALEILKERYARGEIDEEEYERRKKDLLET 80
 
Name Accession Description Interval E-value
TM0315 COG3462
Uncharacterized protein, contains short C-terminal (SHOCT) domain [Function unknown];
65-115 1.50e-14

Uncharacterized protein, contains short C-terminal (SHOCT) domain [Function unknown];


Pssm-ID: 442685  Cd Length: 80  Bit Score: 63.39  E-value: 1.50e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2280525188  65 VAIPVYIVYAL-----LDRSATETETRPLSVLRERYARGELTDEEFEQRRKQLEES 115
Cdd:COG3462    25 VLIVYLLVRLLrgrggGPSDGGSEEDSALEILKERYARGEIDEEEYERRKKDLLET 80
SHOCT pfam09851
Short C-terminal domain;
86-113 4.53e-07

Short C-terminal domain;


Pssm-ID: 430878  Cd Length: 28  Bit Score: 42.97  E-value: 4.53e-07
                          10        20
                  ....*....|....*....|....*...
gi 2280525188  86 RPLSVLRERYARGELTDEEFEQRRKQLE 113
Cdd:pfam09851   1 DALEKLKELYARGEITEEEFERKKAKLL 28
 
Name Accession Description Interval E-value
TM0315 COG3462
Uncharacterized protein, contains short C-terminal (SHOCT) domain [Function unknown];
65-115 1.50e-14

Uncharacterized protein, contains short C-terminal (SHOCT) domain [Function unknown];


Pssm-ID: 442685  Cd Length: 80  Bit Score: 63.39  E-value: 1.50e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2280525188  65 VAIPVYIVYAL-----LDRSATETETRPLSVLRERYARGELTDEEFEQRRKQLEES 115
Cdd:COG3462    25 VLIVYLLVRLLrgrggGPSDGGSEEDSALEILKERYARGEIDEEEYERRKKDLLET 80
SHOCT pfam09851
Short C-terminal domain;
86-113 4.53e-07

Short C-terminal domain;


Pssm-ID: 430878  Cd Length: 28  Bit Score: 42.97  E-value: 4.53e-07
                          10        20
                  ....*....|....*....|....*...
gi 2280525188  86 RPLSVLRERYARGELTDEEFEQRRKQLE 113
Cdd:pfam09851   1 DALEKLKELYARGEITEEEFERKKAKLL 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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