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Conserved domains on  [gi|2280525181|ref|WP_256395399|]
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PadR family transcriptional regulator [Halohasta litorea]

Protein Classification

PadR family transcriptional regulator( domain architecture ID 10507796)

PadR family transcriptional regulator similar to Lactococcus lactis LmrR which belongs to the PadR-like family of transcriptional regulators, a transcriptional repressor of lmrCD expression and an autoregulator of its own expression.

Gene Ontology:  GO:0003677
PubMed:  15808743

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PadR pfam03551
Transcriptional regulator PadR-like family; Members of this family are transcriptional ...
 11-78 2.69e-13

Transcriptional regulator PadR-like family; Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.


:

Pssm-ID: 397561  Cd Length: 74  Bit Score: 59.18  E-value: 2.69e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2280525181 11 LLYVIaGLEEPHGLAIKEELEDYY--EKEIHHGRLYPNLDTLVDKGLVEKGQQD----RRTNFYTMTRRGRREI 78
Cdd:pfam03551  1 VLAVL-GEQPRYGYEIIKELEELSggFWRPSEGTLYPILKRLEKEGLVESEWVDsgggPPRKYYRLTDAGRREL 73
 
Name Accession Description Interval E-value
PadR pfam03551
Transcriptional regulator PadR-like family; Members of this family are transcriptional ...
 11-78 2.69e-13

Transcriptional regulator PadR-like family; Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.


Pssm-ID: 397561  Cd Length: 74  Bit Score: 59.18  E-value: 2.69e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2280525181 11 LLYVIaGLEEPHGLAIKEELEDYY--EKEIHHGRLYPNLDTLVDKGLVEKGQQD----RRTNFYTMTRRGRREI 78
Cdd:pfam03551  1 VLAVL-GEQPRYGYEIIKELEELSggFWRPSEGTLYPILKRLEKEGLVESEWVDsgggPPRKYYRLTDAGRREL 73
PadR COG1695
DNA-binding transcriptional regulator, PadR family [Transcription];
7-89 1.36e-11

DNA-binding transcriptional regulator, PadR family [Transcription];


Pssm-ID: 441301  Cd Length: 102  Bit Score: 55.33  E-value: 1.36e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280525181   7 FQRDLLYVIAGlEEPHGLAIKEELEDYYEK--EIHHGRLYPNLDTLVDKGLVEK----GQQDRRTNFYTMTRRGRREIDA 80
Cdd:COG1695    10 LELLILALLAE-GPMYGYEIIKELEERSGGfwKVSEGTLYPALKRLEKEGLVESeweeSEGGPRRKYYRLTEAGREELAE 88


                  ....*....
gi 2280525181  81 RSDWEEQYL 89
Cdd:COG1695    89 WLEEWEKLA 97
 
Name Accession Description Interval E-value
PadR pfam03551
Transcriptional regulator PadR-like family; Members of this family are transcriptional ...
 11-78 2.69e-13

Transcriptional regulator PadR-like family; Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.


Pssm-ID: 397561  Cd Length: 74  Bit Score: 59.18  E-value: 2.69e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2280525181 11 LLYVIaGLEEPHGLAIKEELEDYY--EKEIHHGRLYPNLDTLVDKGLVEKGQQD----RRTNFYTMTRRGRREI 78
Cdd:pfam03551  1 VLAVL-GEQPRYGYEIIKELEELSggFWRPSEGTLYPILKRLEKEGLVESEWVDsgggPPRKYYRLTDAGRREL 73
PadR COG1695
DNA-binding transcriptional regulator, PadR family [Transcription];
7-89 1.36e-11

DNA-binding transcriptional regulator, PadR family [Transcription];


Pssm-ID: 441301  Cd Length: 102  Bit Score: 55.33  E-value: 1.36e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280525181   7 FQRDLLYVIAGlEEPHGLAIKEELEDYYEK--EIHHGRLYPNLDTLVDKGLVEK----GQQDRRTNFYTMTRRGRREIDA 80
Cdd:COG1695    10 LELLILALLAE-GPMYGYEIIKELEERSGGfwKVSEGTLYPALKRLEKEGLVESeweeSEGGPRRKYYRLTEAGREELAE 88


                  ....*....
gi 2280525181  81 RSDWEEQYL 89
Cdd:COG1695    89 WLEEWEKLA 97
MarR COG1846
DNA-binding transcriptional regulator, MarR family [Transcription];
2-80 3.26e-03

DNA-binding transcriptional regulator, MarR family [Transcription];


Pssm-ID: 441451 [Multi-domain]  Cd Length: 142  Bit Score: 34.18  E-value: 3.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2280525181   2 YDLTGFQRDLLYVIAGLEEPHGLAIKEELEdyyekeIHHGRLYPNLDTLVDKGLVE--KGQQDRRTNFYTMTRRGRREID 79
Cdd:COG1846    34 LGLTPAQFRVLAALAEAGGLTQSELAERLG------LTKSTVSRLLDRLEEKGLVErePDPEDRRAVLVRLTEKGRALLE 107


                  .
gi 2280525181  80 A 80
Cdd:COG1846   108 E 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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