NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2273361748|ref|WP_254677923|]
View 

hypothetical protein, partial [Enterobacter sp. IF2SW-B1]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK10982 super family cl32620
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
 16-40 5.31e-10

galactose/methyl galaxtoside transporter ATP-binding protein; Provisional


The actual alignment was detected with superfamily member PRK10982:

Pssm-ID: 182880 [Multi-domain]  Cd Length: 491  Bit Score: 51.27  E-value: 5.31e-10
                          10        20
                  ....*....|....*....|....*
gi 2273361748  16 MPGVNKSFPGVKALDYVNIKVRPHS 40
Cdd:PRK10982    1 MSNISKSFPGVKALDNVNLKVRPHS 25
 
Name Accession Description Interval E-value
PRK10982 PRK10982
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
 16-40 5.31e-10

galactose/methyl galaxtoside transporter ATP-binding protein; Provisional


Pssm-ID: 182880 [Multi-domain]  Cd Length: 491  Bit Score: 51.27  E-value: 5.31e-10
                          10        20
                  ....*....|....*....|....*
gi 2273361748  16 MPGVNKSFPGVKALDYVNIKVRPHS 40
Cdd:PRK10982    1 MSNISKSFPGVKALDNVNLKVRPHS 25
GguA NF040905
sugar ABC transporter ATP-binding protein;
13-38 2.95e-08

sugar ABC transporter ATP-binding protein;


Pssm-ID: 468840 [Multi-domain]  Cd Length: 500  Bit Score: 46.32  E-value: 2.95e-08
                          10        20
                  ....*....|....*....|....*.
gi 2273361748  13 LVEMPGVNKSFPGVKALDYVNIKVRP 38
Cdd:NF040905    1 ILEMRGITKTFPGVKALDDVNLSVRE 26
MglA COG1129
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
11-38 4.63e-08

ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];


Pssm-ID: 440745 [Multi-domain]  Cd Length: 497  Bit Score: 45.78  E-value: 4.63e-08
                          10        20
                  ....*....|....*....|....*...
gi 2273361748  11 EYLVEMPGVNKSFPGVKALDYVNIKVRP 38
Cdd:COG1129     2 EPLLEMRGISKSFGGVKALDGVSLELRP 29
ABC_Carb_Monos_I cd03216
First domain of the ATP-binding cassette component of monosaccharide transport system; This ...
 14-38 1.25e-05

First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.


Pssm-ID: 213183 [Multi-domain]  Cd Length: 163  Bit Score: 38.56  E-value: 1.25e-05
                          10        20
                  ....*....|....*....|....*
gi 2273361748  14 VEMPGVNKSFPGVKALDYVNIKVRP 38
Cdd:cd03216     1 LELRGITKRFGGVKALDGVSLSVRR 25
xylG TIGR02633
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ...
 13-38 1.66e-04

D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 131681 [Multi-domain]  Cd Length: 500  Bit Score: 35.96  E-value: 1.66e-04
                          10        20
                  ....*....|....*....|....*.
gi 2273361748  13 LVEMPGVNKSFPGVKALDYVNIKVRP 38
Cdd:TIGR02633   1 LLEMKGIVKTFGGVKALDGIDLEVRP 26
 
Name Accession Description Interval E-value
PRK10982 PRK10982
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
 16-40 5.31e-10

galactose/methyl galaxtoside transporter ATP-binding protein; Provisional


Pssm-ID: 182880 [Multi-domain]  Cd Length: 491  Bit Score: 51.27  E-value: 5.31e-10
                          10        20
                  ....*....|....*....|....*
gi 2273361748  16 MPGVNKSFPGVKALDYVNIKVRPHS 40
Cdd:PRK10982    1 MSNISKSFPGVKALDNVNLKVRPHS 25
PRK13549 PRK13549
xylose transporter ATP-binding subunit; Provisional
 11-38 5.26e-09

xylose transporter ATP-binding subunit; Provisional


Pssm-ID: 184134 [Multi-domain]  Cd Length: 506  Bit Score: 48.77  E-value: 5.26e-09
                          10        20
                  ....*....|....*....|....*...
gi 2273361748  11 EYLVEMPGVNKSFPGVKALDYVNIKVRP 38
Cdd:PRK13549    3 EYLLEMKNITKTFGGVKALDNVSLKVRA 30
GguA NF040905
sugar ABC transporter ATP-binding protein;
13-38 2.95e-08

sugar ABC transporter ATP-binding protein;


Pssm-ID: 468840 [Multi-domain]  Cd Length: 500  Bit Score: 46.32  E-value: 2.95e-08
                          10        20
                  ....*....|....*....|....*.
gi 2273361748  13 LVEMPGVNKSFPGVKALDYVNIKVRP 38
Cdd:NF040905    1 ILEMRGITKTFPGVKALDDVNLSVRE 26
MglA COG1129
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
11-38 4.63e-08

ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];


Pssm-ID: 440745 [Multi-domain]  Cd Length: 497  Bit Score: 45.78  E-value: 4.63e-08
                          10        20
                  ....*....|....*....|....*...
gi 2273361748  11 EYLVEMPGVNKSFPGVKALDYVNIKVRP 38
Cdd:COG1129     2 EPLLEMRGISKSFGGVKALDGVSLELRP 29
NupO COG3845
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ...
 9-38 1.03e-06

ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];


Pssm-ID: 443055 [Multi-domain]  Cd Length: 504  Bit Score: 41.94  E-value: 1.03e-06
                          10        20        30
                  ....*....|....*....|....*....|
gi 2273361748   9 SGEYLVEMPGVNKSFPGVKALDYVNIKVRP 38
Cdd:COG3845     1 MMPPALELRGITKRFGGVVANDDVSLTVRP 30
ABC_Carb_Monos_I cd03216
First domain of the ATP-binding cassette component of monosaccharide transport system; This ...
 14-38 1.25e-05

First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.


Pssm-ID: 213183 [Multi-domain]  Cd Length: 163  Bit Score: 38.56  E-value: 1.25e-05
                          10        20
                  ....*....|....*....|....*
gi 2273361748  14 VEMPGVNKSFPGVKALDYVNIKVRP 38
Cdd:cd03216     1 LELRGITKRFGGVKALDGVSLSVRR 25
PRK09700 PRK09700
D-allose ABC transporter ATP-binding protein AlsA;
13-39 1.98e-05

D-allose ABC transporter ATP-binding protein AlsA;


Pssm-ID: 182036 [Multi-domain]  Cd Length: 510  Bit Score: 38.61  E-value: 1.98e-05
                          10        20
                  ....*....|....*....|....*..
gi 2273361748  13 LVEMPGVNKSFPGVKALDYVNIKVRPH 39
Cdd:PRK09700    5 YISMAGIGKSFGPVHALKSVNLTVYPG 31
PRK10762 PRK10762
D-ribose transporter ATP binding protein; Provisional
 13-38 3.33e-05

D-ribose transporter ATP binding protein; Provisional


Pssm-ID: 236755 [Multi-domain]  Cd Length: 501  Bit Score: 38.06  E-value: 3.33e-05
                          10        20
                  ....*....|....*....|....*.
gi 2273361748  13 LVEMPGVNKSFPGVKALDYVNIKVRP 38
Cdd:PRK10762    4 LLQLKGIDKAFPGVKALSGAALNVYP 29
xylG TIGR02633
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ...
 13-38 1.66e-04

D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 131681 [Multi-domain]  Cd Length: 500  Bit Score: 35.96  E-value: 1.66e-04
                          10        20
                  ....*....|....*....|....*.
gi 2273361748  13 LVEMPGVNKSFPGVKALDYVNIKVRP 38
Cdd:TIGR02633   1 LLEMKGIVKTFGGVKALDGIDLEVRP 26
araG PRK11288
L-arabinose ABC transporter ATP-binding protein AraG;
9-38 8.06e-04

L-arabinose ABC transporter ATP-binding protein AraG;


Pssm-ID: 183077 [Multi-domain]  Cd Length: 501  Bit Score: 34.12  E-value: 8.06e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 2273361748   9 SGEYLvEMPGVNKSFPGVKALDYVNIKVRP 38
Cdd:PRK11288    1 SSPYL-SFDGIGKTFPGVKALDDISFDCRA 29
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH