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Conserved domains on  [gi|2240206042|ref|WP_249437669|]
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iron ABC transporter permease, partial [Escherichia coli]

Protein Classification

ABC transporter permease( domain architecture ID 11439550)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0055085|GO:0140359|GO:0042626|GO:0016020
PubMed:  31571164|27273632|26517919|18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
1-325 4.49e-66

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 216.95  E-value: 4.49e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042   1 LGGNFDVLATQIYFYITGsQLDYQAASTLGAFLLLFSLLVFCVQYMWIGKRSYVTVSGKSYRGDVQPLPVTLVWSVVAIL 80
Cdd:COG1178   217 LGGGYTTLTTAIYQAWLG-DFDLGAAAALALVLLLLVLLLLLLERRLRRRRRYATVGGRARRPRRVKLGRWRWLALALCL 295

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042  81 AVWIAFNALLYGSIFYGSFTVnwGVDYTLTLDNFIKLFGQGmsdGAWPSLLDTLLYAGIAAPITAIFGLLIAWVVVRQQF 160
Cdd:COG1178   296 LLVLLGLLLPLLALLLWSLTK--ALDDNLTLDNYRFVLLDP---SLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRG 370

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 161 KGKKTIEFTTMLCFAVPGTVAGVSYILAFNS-APVYLTGTAAIVIISMVMRNVPVGIRAGIAGLGQIDKSLDEASLSLRA 239
Cdd:COG1178   371 RLARLLDRLAMLPYAVPGIVLGLGLLLLFNRpLPLLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGA 450

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 240 GSLRTITHILLPLLRPAILSALIYSFVRAITTVSAIVFLVTPDTRVATAYILNRVEDGEYGVAIAYGSILIVVMLAIIFL 319
Cdd:COG1178   451 SPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIYQLASSGRYGEAAALALLLVLVSLLPVLL 530


                  ....*.
gi 2240206042 320 FDWLIG 325
Cdd:COG1178   531 LERLLG 536
 
Name Accession Description Interval E-value
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
1-325 4.49e-66

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 216.95  E-value: 4.49e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042   1 LGGNFDVLATQIYFYITGsQLDYQAASTLGAFLLLFSLLVFCVQYMWIGKRSYVTVSGKSYRGDVQPLPVTLVWSVVAIL 80
Cdd:COG1178   217 LGGGYTTLTTAIYQAWLG-DFDLGAAAALALVLLLLVLLLLLLERRLRRRRRYATVGGRARRPRRVKLGRWRWLALALCL 295

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042  81 AVWIAFNALLYGSIFYGSFTVnwGVDYTLTLDNFIKLFGQGmsdGAWPSLLDTLLYAGIAAPITAIFGLLIAWVVVRQQF 160
Cdd:COG1178   296 LLVLLGLLLPLLALLLWSLTK--ALDDNLTLDNYRFVLLDP---SLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRG 370

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 161 KGKKTIEFTTMLCFAVPGTVAGVSYILAFNS-APVYLTGTAAIVIISMVMRNVPVGIRAGIAGLGQIDKSLDEASLSLRA 239
Cdd:COG1178   371 RLARLLDRLAMLPYAVPGIVLGLGLLLLFNRpLPLLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGA 450

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 240 GSLRTITHILLPLLRPAILSALIYSFVRAITTVSAIVFLVTPDTRVATAYILNRVEDGEYGVAIAYGSILIVVMLAIIFL 319
Cdd:COG1178   451 SPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIYQLASSGRYGEAAALALLLVLVSLLPVLL 530


                  ....*.
gi 2240206042 320 FDWLIG 325
Cdd:COG1178   531 LERLLG 536
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 1-323 7.62e-32

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 124.79  E-value: 7.62e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042   1 LGGNFDVLATQIYFYITGSQlDYQAASTLGAFLLLFSLLVfCVQYMWIGKRSYVTVSGKSYRGDVQPLPVTLVWSVVAIL 80
Cdd:TIGR03262 211 IGGDYNVLATDIYKQVIGQQ-NFPMGAVVGVLLLLPALLA-FGIDRAIQRRQRAQLSSRSVPYQPKPNRVRDAACLVYCA 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042  81 AVWIAFNALLyGSIFYGSFTVNWGVDYTLTLDNFikLFGQgMSDGAWPSLLDTLLYAGIAAPITAIFGLLIAWVVVRQQF 160
Cdd:TIGR03262 289 IISAALLAVV-GMAVYASLVKFWPYNLSLTLKHY--NFDL-MDGGGWEAYKNSLRLAATTALIGTILVFGGAYLIEKTRG 364

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 161 KGK--KTIEFTTMLCFAVPGTVAGVSYILAFNSA--PV-YLTGTAAIVIISMVMRNVPVGIRAGIAGLGQIDKSLDEASL 235
Cdd:TIGR03262 365 FGLlrGVLRFLAILPMAVPGLVLGLGYIFFFNAPtnPLnGLYGTMALLVLCTVVHFYTVSHLTAVTALKQIDSEFEAVSA 444

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 236 SLRAGSLRTITHILLPLLRPAILSALIYSFVRAITTVSAIVFLVTPDTRVATAYILNRVEDGEYGVAIAYGSILIVVMLA 315
Cdd:TIGR03262 445 SLKVPFYKTFLRVTLPVCLPAILDIARYLFVNSMTTVSAVVFLYSPDTKLASVAILNMDDAGDIAPAAAMATLIVLTSAV 524


                  ....*...
gi 2240206042 316 IIFLFDWL 323
Cdd:TIGR03262 525 AKLLFALA 532
cysT CHL00187
sulfate transport protein; Provisional
 133-278 3.68e-18

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 82.37  E-value: 3.68e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 133 TLLYAGIAAPITAIFGLLIAWVVVRQQFKGKKTIEFTTMLCFAVPGTVAGVsyILA------------FNSAPVYLTGTA 200
Cdd:CHL00187   60 TLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGL--TLAtvygdngwighlLSHLGIQIVFTK 137

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2240206042 201 AIVIISMVMRNVPVGIRAGIAGLGQIDKSLDEASLSLRAGSLRTITHILLPLLRPAILSALIYSFVRAITTVSAIVFL 278
Cdd:CHL00187  138 LGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSIVII 215
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 130-317 3.12e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 70.00  E-value: 3.12e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 130 LLDTLLYAGIAAPITAIFGLLIAWVVVRQQFKGKKTIEFTTMLCFAVPGTVAGVSYILAFNSA---PVYLTGTAAIVIIS 206
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLlgwGILPGLGLPALILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 207 MVMRnVPVGIRAGIAGLGQIDKSLDEASLSLRAGSLRTITHILLPLLRPAILSALIYSFVRAITTVSAIVFLVTPDTRVA 286
Cdd:cd06261    81 LLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP 159

                         170       180       190
                  ....*....|....*....|....*....|.
gi 2240206042 287 TAYILNRVEDGEYGVAIAYGSILIVVMLAII 317
Cdd:cd06261   160 GTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 133-310 1.46e-06

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 47.93  E-value: 1.46e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 133 TLLYAGIAAPITAIFGLLIAWVVVRQQFKGKKTIEFTTMLCFAVPGTVAG-VSYILAFNSAPV---YLTGTAAIVIISMV 208
Cdd:NF038017    1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGlIVYLLLSRSGPLgflGLLYTPTAMIIAQA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 209 MRNVPVGIRAGIAGLGQIDKSLDEASLSLRAGSLRTIThILLPLLRPAILSALIYSFVRAITTVSAIVFL---VTPDTRV 285
Cdd:NF038017   81 VLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALW-TLLKEARFALLAAVLAGFGRAISEVGAVMMVggnIRGYTRV 159

                         170       180
                  ....*....|....*....|....*
gi 2240206042 286 ATAYILNRVEDGEYGVAIAYGSILI 310
Cdd:NF038017  160 LTTAIVLETSKGNFDLALALGIILL 184
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 146-323 8.04e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 42.67  E-value: 8.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 146 IFGLLIAwvvVRQQFKGKKTIEFTTMLCFAVPGTVAGVSYILAFNSAPVYLTGTAAIVIIsmVMRNVPVGIRAGIAGLGQ 225
Cdd:pfam00528   3 PLGIIAA---LRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILA--LLGWAGYARLIRRAALRS 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 226 IDKSLDEASLSLRAGSLRTITHILLPLLRPAILSALIYSFVRAITTVSAI--VFLVTPDTRVATAYILNRVEDGEYGVAI 303
Cdd:pfam00528  78 LPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLefLGSWPGLGLLLIEAILGYDYPEIQGPVL 157

                         170       180
                  ....*....|....*....|
gi 2240206042 304 AYGSILIVVMLAIIFLFDWL 323
Cdd:pfam00528 158 AAALILLLLNLLVDILQRLL 177
 
Name Accession Description Interval E-value
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
1-325 4.49e-66

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 216.95  E-value: 4.49e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042   1 LGGNFDVLATQIYFYITGsQLDYQAASTLGAFLLLFSLLVFCVQYMWIGKRSYVTVSGKSYRGDVQPLPVTLVWSVVAIL 80
Cdd:COG1178   217 LGGGYTTLTTAIYQAWLG-DFDLGAAAALALVLLLLVLLLLLLERRLRRRRRYATVGGRARRPRRVKLGRWRWLALALCL 295

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042  81 AVWIAFNALLYGSIFYGSFTVnwGVDYTLTLDNFIKLFGQGmsdGAWPSLLDTLLYAGIAAPITAIFGLLIAWVVVRQQF 160
Cdd:COG1178   296 LLVLLGLLLPLLALLLWSLTK--ALDDNLTLDNYRFVLLDP---SLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRG 370

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 161 KGKKTIEFTTMLCFAVPGTVAGVSYILAFNS-APVYLTGTAAIVIISMVMRNVPVGIRAGIAGLGQIDKSLDEASLSLRA 239
Cdd:COG1178   371 RLARLLDRLAMLPYAVPGIVLGLGLLLLFNRpLPLLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGA 450

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 240 GSLRTITHILLPLLRPAILSALIYSFVRAITTVSAIVFLVTPDTRVATAYILNRVEDGEYGVAIAYGSILIVVMLAIIFL 319
Cdd:COG1178   451 SPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIYQLASSGRYGEAAALALLLVLVSLLPVLL 530


                  ....*.
gi 2240206042 320 FDWLIG 325
Cdd:COG1178   531 LERLLG 536
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 74-331 5.80e-32

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 120.22  E-value: 5.80e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042  74 WSVVAILAVWIAFnALLYGSIFY---GSFTVNWGVDY---TLTLDNFIKLFGqgmSDGAWPSLLDTLLYAGIAAPITAIF 147
Cdd:COG1177     5 GRLLLRLFLALVL-LFLYLPILVlvlYSFNDSWFLTFppeGFTLRWYAELFS---DPRLLDALLNSLLIALLSTLLATVL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 148 GLLIAWVVVRQQFKGKKTIEFTTMLCFAVPGTVAGVSYILAFNSAPvyLTGTAAIVIISMVMRNVPVGIRAGIAGLGQID 227
Cdd:COG1177    81 GTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALG--LSGGLWGLILAHVVFTLPFVVLVVLARLQGFD 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 228 KSLDEASLSLRAGSLRTITHILLPLLRPAILSALIYSFVRAITTVSAIVFLVTPDTRVATAYILNRVEDGEYGVAIAYGS 307
Cdd:COG1177   159 PSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALST 238

                         250       260
                  ....*....|....*....|....
gi 2240206042 308 ILIVVMLAIIFLFDWLIGEARISR 331
Cdd:COG1177   239 LLILLSLLLLLLAERLRRRGERRR 262
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 1-323 7.62e-32

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 124.79  E-value: 7.62e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042   1 LGGNFDVLATQIYFYITGSQlDYQAASTLGAFLLLFSLLVfCVQYMWIGKRSYVTVSGKSYRGDVQPLPVTLVWSVVAIL 80
Cdd:TIGR03262 211 IGGDYNVLATDIYKQVIGQQ-NFPMGAVVGVLLLLPALLA-FGIDRAIQRRQRAQLSSRSVPYQPKPNRVRDAACLVYCA 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042  81 AVWIAFNALLyGSIFYGSFTVNWGVDYTLTLDNFikLFGQgMSDGAWPSLLDTLLYAGIAAPITAIFGLLIAWVVVRQQF 160
Cdd:TIGR03262 289 IISAALLAVV-GMAVYASLVKFWPYNLSLTLKHY--NFDL-MDGGGWEAYKNSLRLAATTALIGTILVFGGAYLIEKTRG 364

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 161 KGK--KTIEFTTMLCFAVPGTVAGVSYILAFNSA--PV-YLTGTAAIVIISMVMRNVPVGIRAGIAGLGQIDKSLDEASL 235
Cdd:TIGR03262 365 FGLlrGVLRFLAILPMAVPGLVLGLGYIFFFNAPtnPLnGLYGTMALLVLCTVVHFYTVSHLTAVTALKQIDSEFEAVSA 444

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 236 SLRAGSLRTITHILLPLLRPAILSALIYSFVRAITTVSAIVFLVTPDTRVATAYILNRVEDGEYGVAIAYGSILIVVMLA 315
Cdd:TIGR03262 445 SLKVPFYKTFLRVTLPVCLPAILDIARYLFVNSMTTVSAVVFLYSPDTKLASVAILNMDDAGDIAPAAAMATLIVLTSAV 524


                  ....*...
gi 2240206042 316 IIFLFDWL 323
Cdd:TIGR03262 525 AKLLFALA 532
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 108-328 2.50e-27

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 107.91  E-value: 2.50e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 108 TLTLDNFIKLFGqgmSDGAWPSLLDTLLYAGIAAPITAIFGLLIAWVVVRQQFKGKKTIEFTTMLCFAVPGTVAGVSYIL 187
Cdd:COG0555    37 GLGWAEFWAVLT---SPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRLVDALVDLPFALPTAVAGIALLL 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 188 AFNSAPVY----------LTGTAAIVIISMVMRNVPVGIRAGIAGLGQIDKSLDEASLSLRAGSLRTITHILLPLLRPAI 257
Cdd:COG0555   114 LFGPNGWLgqllaplgikVAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPAL 193

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2240206042 258 LSALIYSFVRAITTVSAIVFLV--TPD-TRVATAYILNRVEDGEYGVAIAYGSILIVVMLAIIFLFDWLIGEAR 328
Cdd:COG0555   194 LTGFALAFARALGEFGAVIFIAgnLPMkTEILPLLIYLKLEEGDYAGATAIALVLLLISFLLLLLINLLQRRSR 267
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
69-335 1.04e-21

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 95.61  E-value: 1.04e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042  69 PVTLVWSVVAILAVWIAFnALLYgsIFYGSFTVNWgvdytltlDNFIKLFGqgmSDGAWPSLLDTLLYAGIAAPITAIFG 148
Cdd:COG1178     9 PRLLLLLLALLLALLVLL-PLLA--LLLRAFTDGL--------ANFWALLS---DPYLWRALGNTLLLALLVTLLSLLLG 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 149 LLIAWVVVRQQFKGKKTIEFTTMLCFAVPGTVAGVSYILAFNSAPVYLTGTAAI-------------VIISMVMRNVPVG 215
Cdd:COG1178    75 VPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRALfgleppdiyglggIILVLVLFNYPYV 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 216 IRAGIAGLGQIDKSLDEASLSLRAGSLRTITHILLPLLRPAILSALIYSFVRAITTVsAIVFLVTPDTRVATAYILNRV- 294
Cdd:COG1178   155 YLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADF-GTPLVLGGGYTTLTTAIYQAWl 233

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 2240206042 295 EDGEYGVAIAYGSILIVVMLAIIFLFDWLIGEARISRSKAK 335
Cdd:COG1178   234 GDFDLGAAAALALVLLLLVLLLLLLERRLRRRRRYATVGGR 274
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 74-332 4.56e-21

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 91.36  E-value: 4.56e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042  74 WSVVAILAVWIAFNALL-YGSIFYGSFTVN---WGVDYTLTLDNFIKLFGqgmSDGAWPSLLDTLLYAGIAAPITAIFGL 149
Cdd:COG1176    12 LLLLLPALLWLLLFFVLpLLLLLVYSFTTRdpyGGVVPGFTLENYARLFT---DPLYLKVLLRTLWIALLTTLICLLLGY 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 150 LIAWVVVRQQFKGKKTIEFTTMLCFAVP---------------GTVAGVSYILAFNSAPVYLTGTAAIVIISMVMRNVPV 214
Cdd:COG1176    89 PIAYFLARAPPRWRNLLLLLVILPFWTSflvrtyawivllgrnGLLNSLLLALGLIDEPLRLLYTEFAVVIGLVYVYLPF 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 215 GIRAGIAGLGQIDKSLDEASLSLRAGSLRTITHILLPLLRPAILSALIYSFVRAITTVSAIVFLVTPDTRVATAYILNRV 294
Cdd:COG1176   169 MVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQQF 248

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 2240206042 295 -EDGEYGVAIAYGSILIVVMLAIIFLFDWLIGEARISRS 332
Cdd:COG1176   249 lSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLLGG 287
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 133-319 7.59e-19

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 84.71  E-value: 7.59e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 133 TLLYAGIAAPITAIFGLLIAWVVVRQQFKGKKTIEFTTMLCFAVPGTVAGVSYILAFNSAPVY----------LTGTAAI 202
Cdd:TIGR00969  65 TLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALIDLPFALSPVVAGLTLALLYGSNGWLgswlasfgiqIIFTWPG 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 203 VIISMVMRNVPVGIRAGIAGLGQIDKSLDEASLSLRAGSLRTITHILLPLLRPAILSALIYSFVRAITTVSAIVFL---V 279
Cdd:TIGR00969 145 MALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAVVVVsgnI 224

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2240206042 280 TPDTRVATAYILNRVEDGEYGVAIAYGSILIVVMLAIIFL 319
Cdd:TIGR00969 225 PGKTLTLPLLIEERLEQYDYPGAYVIAAVLLLVSLVTLFL 264
cysT CHL00187
sulfate transport protein; Provisional
 133-278 3.68e-18

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 82.37  E-value: 3.68e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 133 TLLYAGIAAPITAIFGLLIAWVVVRQQFKGKKTIEFTTMLCFAVPGTVAGVsyILA------------FNSAPVYLTGTA 200
Cdd:CHL00187   60 TLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGL--TLAtvygdngwighlLSHLGIQIVFTK 137

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2240206042 201 AIVIISMVMRNVPVGIRAGIAGLGQIDKSLDEASLSLRAGSLRTITHILLPLLRPAILSALIYSFVRAITTVSAIVFL 278
Cdd:CHL00187  138 LGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSIVII 215
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
133-318 1.21e-16

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 78.64  E-value: 1.21e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 133 TLLYAGIAAPITAIFGLLIAWVVVRQQFKGKKTIEFTTMLCFAVPGTVAGVSYILAFNSAPVY----------LTGTAAI 202
Cdd:PRK10971   63 TLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYgewlakfdikVTYTWLG 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 203 VIISMVMRNVPVGIRAGIAGLGQIDKSLDEASLSLRAGSLRTITHILLPLLRPAILSALIYSFVRAITTVSAIVFL---V 279
Cdd:PRK10971  143 IAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIagnI 222

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2240206042 280 TPDTRVATAYILNRVEDGEYGVAIAYGSILIVVMLAIIF 318
Cdd:PRK10971  223 AWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLF 261
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
54-326 2.80e-16

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 77.87  E-value: 2.80e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042  54 VTVSGKSYRGDVQPLPVTLVWSVVAILAVWIAFnALLYGsiFYGSFTvnwgvDYTLT--------LDNFIKLFGqgmSDG 125
Cdd:COG1175     5 TSAAARRRRRRRRLAAYLFLLPALLLLLVFVLY-PLLYT--LYLSFT-----DWNLLgpppefvgLDNYARLFT---DPR 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 126 AWPSLLDTLLYAGIAAPITAIFGLLIAwVVVRQQFKGKKTIEFTTMLCFAVPGTVAGVSYILAFNS-------------- 191
Cdd:COG1175    74 FWNALGNTLLFTVVSVPLQLVLGLLLA-LLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPdygllnallgalgl 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 192 APVYLTGTAAIVIISMVM----RNVPVGIRAGIAGLGQIDKSLDEASLSLRAGSLRTITHILLPLLRPAILSALIYSFVR 267
Cdd:COG1175   153 EPINWLGDPSLALPAVIIvtvwKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIG 232

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2240206042 268 AItTVSAIVFLVT-----PDTRVATAYILNR-VEDGEYGVAIAYGSILIVVMLAIIFLFDWLIGE 326
Cdd:COG1175   233 AL-QVFDLVYVLTgggpgNSTTTLVLYIYQTaFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRR 296
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 108-320 1.90e-15

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 75.13  E-value: 1.90e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 108 TLTLDNFIKLFGQGmsdGAWPSLLDTLLYAGIAAPITAIFGLLIAWVVVRQQFKGKKTIEFTTMLCFAVPGTVAGVSYIL 187
Cdd:COG0395    57 EFTLENYRAAFTDG---PFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYL 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 188 AFNSapVYLTGTAAIVIISMVMRNVPVGI---RAGIAGlgqIDKSLDEASLSLRAGSLRTITHILLPLLRPAILSALIYS 264
Cdd:COG0395   134 LFRQ--LGLLNTYWGLILPYLAFGLPFGIfllRQFFRS---IPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFT 208

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2240206042 265 FVRAIT-TVSAIVFLVTPDTRVATAYI--LNRVEDGEYGVAIAYGSILIVVMLAIIFLF 320
Cdd:COG0395   209 FIGAWNdFLWPLILLTSPDLRTLPVGLasFQGQYGTDWGLLMAAAVIATLPVLILFLFL 267
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 130-317 3.12e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 70.00  E-value: 3.12e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 130 LLDTLLYAGIAAPITAIFGLLIAWVVVRQQFKGKKTIEFTTMLCFAVPGTVAGVSYILAFNSA---PVYLTGTAAIVIIS 206
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLlgwGILPGLGLPALILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 207 MVMRnVPVGIRAGIAGLGQIDKSLDEASLSLRAGSLRTITHILLPLLRPAILSALIYSFVRAITTVSAIVFLVTPDTRVA 286
Cdd:cd06261    81 LLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP 159

                         170       180       190
                  ....*....|....*....|....*....|.
gi 2240206042 287 TAYILNRVEDGEYGVAIAYGSILIVVMLAII 317
Cdd:cd06261   160 GTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 70-320 3.46e-10

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 59.78  E-value: 3.46e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042  70 VTLVWSVVAILAVWIAFNALLYGSifyGSFTVNWGVDYTLTLDNFIKLFGQGMSdGAWpsLLDTLLYAGIAAPITAIFGL 149
Cdd:COG3833    21 VLIILAIIALFPILWVVSASFNPG---GSLYSSSLIPENFTLENYKKLFTETPF-LRW--FLNSLIVAVVTAIISVFLAA 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 150 LIAWVVVRQQFKGKKTIEFTTMLCFAVPGTVAGVSYILAFNSapVYLTGTAAIVIISMVMRNVPVGIRAGIAGLGQIDKS 229
Cdd:COG3833    95 LAAYAFSRFRFKGRKAGLLALLLLQMFPAFLALVALYLLLSA--LGLLNTLLGLILVYLGGAIPFNTWLMKGYFDTIPKE 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 230 LDEASLSLRAGSLRTITHILLPLLRPAILSALIYSFVRAITT-VSAIVFLVTPDTR---VATAYILNRVEDGEYGVAIAy 305
Cdd:COG3833   173 LDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDfILASVLLRSPENYtlaVGLYSFVSDQRNTNWGVFAA- 251

                         250
                  ....*....|....*
gi 2240206042 306 GSILIVVMLAIIFLF 320
Cdd:COG3833   252 GAVLVAIPIVILFLF 266
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 68-328 2.06e-08

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 54.22  E-value: 2.06e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042  68 LPVTLVWSVVAILAVWIA------FNALLYGsIFYGSFTVNWgvdYTLTLDNfiklfgQGMSDGAWPSLLdtllYAGIAA 141
Cdd:PRK09500    5 LRGGFMTLVYAYLYIPIIilivnsFNSSRFG-INWKGFTTKW---YELLFNN------DSLLQAAQHSLT----MAVFSA 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 142 PITAIFGLLIAWVVVRQQFKGKKTIEFTTMLCFAVPGTVAGVSYILAFNSAPVYLT-GTAAIVIISMVMRNVPVGIRAGI 220
Cdd:PRK09500   71 TFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGfWSLLFAHITFCLPFVVVTVYSRL 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 221 AGLgqiDKSLDEASLSLRAGSLRTITHILLPLLRPAILSALIYSFVRAITTVSAIVFLVTPDTRVATAYILNRVEDGEYG 300
Cdd:PRK09500  151 KGF---DVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGPSYEILPLKIYSMVKVGVSP 227

                         250       260
                  ....*....|....*....|....*...
gi 2240206042 301 VAIAYGSILIVVMLAIIFLFDWLIGEAR 328
Cdd:PRK09500  228 EVNALATILLVLSLVLVILSQLLARDKT 255
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
114-320 3.59e-07

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 50.91  E-value: 3.59e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 114 FIKLFGQGMsDGAWPSLLD---------TLLYAGIAAPITAIFGLLIAWVVVRQQFKGKKTIEFTTMLCFAVPGTVAGVS 184
Cdd:PRK11602   42 FVQAFSKGL-MPVLQNLADpdmlhaiwlTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLV 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 185 YILAFNS-APV--YLTGTAAIVIIS---MVMRNV----PVGIRAGIAGLGQIDKSLDEASLSLRAGSLRTITHILLPLLR 254
Cdd:PRK11602  121 YLLFYGSnGPLggWLDEHNLQLMFSwpgMVLVTIfvtcPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIR 200

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2240206042 255 PAILSALIYSFVRAITTVSAiVFLVTPDTRVATAYILNRVE--DGEYGVAIAYGSILIVVMLAIIFLF 320
Cdd:PRK11602  201 WALLYGVVLTNARAIGEFGA-VSVVSGSIRGETLSLPLQIEllEQDYNTVGSFTAAALLTLMAIITLF 267
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 133-310 1.46e-06

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 47.93  E-value: 1.46e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 133 TLLYAGIAAPITAIFGLLIAWVVVRQQFKGKKTIEFTTMLCFAVPGTVAG-VSYILAFNSAPV---YLTGTAAIVIISMV 208
Cdd:NF038017    1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGlIVYLLLSRSGPLgflGLLYTPTAMIIAQA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 209 MRNVPVGIRAGIAGLGQIDKSLDEASLSLRAGSLRTIThILLPLLRPAILSALIYSFVRAITTVSAIVFL---VTPDTRV 285
Cdd:NF038017   81 VLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALW-TLLKEARFALLAAVLAGFGRAISEVGAVMMVggnIRGYTRV 159

                         170       180
                  ....*....|....*....|....*
gi 2240206042 286 ATAYILNRVEDGEYGVAIAYGSILI 310
Cdd:NF038017  160 LTTAIVLETSKGNFDLALALGIILL 184
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 111-270 2.19e-05

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 46.21  E-value: 2.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 111 LDNFIKLFGqgmSDGAWPSLLDTLLYAGIAAPITAIFGLLIAWVVVRQQFKGKKTIEFTTMLCFAVPGTVAGVSYILAFN 190
Cdd:TIGR03262  40 LANFAEYFA---TPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFG 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 191 SAPVY--LTGTAAI-----VIISMVMRNVPVGIRAGIAGLGQIDKSLDEASLSLRAGSLRTITHILLPLLRPAILSALIY 263
Cdd:TIGR03262 117 NQGLLkgLLGGFSIygfwgIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFV 196


                  ....*..
gi 2240206042 264 SFVRAIT 270
Cdd:TIGR03262 197 VFTLVIT 203
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 146-323 8.04e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 42.67  E-value: 8.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 146 IFGLLIAwvvVRQQFKGKKTIEFTTMLCFAVPGTVAGVSYILAFNSAPVYLTGTAAIVIIsmVMRNVPVGIRAGIAGLGQ 225
Cdd:pfam00528   3 PLGIIAA---LRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILA--LLGWAGYARLIRRAALRS 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 226 IDKSLDEASLSLRAGSLRTITHILLPLLRPAILSALIYSFVRAITTVSAI--VFLVTPDTRVATAYILNRVEDGEYGVAI 303
Cdd:pfam00528  78 LPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLefLGSWPGLGLLLIEAILGYDYPEIQGPVL 157

                         170       180
                  ....*....|....*....|
gi 2240206042 304 AYGSILIVVMLAIIFLFDWL 323
Cdd:pfam00528 158 AAALILLLLNLLVDILQRLL 177
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 133-338 3.21e-03

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 38.68  E-value: 3.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 133 TLLYAGIAAPITAIFGLLIAWVVVR-QQFKGKKTIEFTTMLCFAVPGTVAGVSYILAFNSAPVYL-------TGTAAIVI 204
Cdd:PRK10592   68 SLTIAACAATAAAILGTIAAVVMVRfGRFRGSNGFAFMITAPLVMPDVITGLSLLLLFVALAHAIgwpadrgMLTIWLAH 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 205 ISMVMRNVPVGIRAGiagLGQIDKSLDEASLSLRAGSLRTITHILLPLLRPAILSALIYSFVRAITTVSAIVFLVTPDTR 284
Cdd:PRK10592  148 VTFCTAYVAVVISSR---LRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGPGAT 224

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2240206042 285 VATAYILNRVEDGEYGVAIAYGSILIVVMLAIIFLFDWLIGEARISRSKAKNQA 338
Cdd:PRK10592  225 TLPMLVFSSVRMGVNPEINALATLILGVVGIVGFIAWYLMARAEKQRIRDIQRA 278
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 75-259 3.81e-03

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 38.52  E-value: 3.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042  75 SVVAILAVWIAF-----NALLYGSIFYGSFTVNWgVDYTLTLDNFIKLFGQGMSDGAWPSLLdtllYAGIAAPITAIFGL 149
Cdd:PRK09497   10 VVIVTIVGWLVLfvflpNLMIIGTSFLTRDDANF-VKMVFTLDNYTRLLDPLYAEVLLHSLN----MALIATLACLVLGY 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 150 LIAWVVVRQQFKGKKTIEFTTMLCF---------------AVPGTVAGVSYILAFNSAPVYLTGTAAIVIISMVMRNVPV 214
Cdd:PRK09497   85 PFAWFLAKLPHKVRPLLLFLLIVPFwtnsliriyglkiflSTKGYLNEFLLWLGVIDTPIRIMFTESAVIIGLVYILLPF 164

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 2240206042 215 GIRAGIAGLGQIDKSLDEASLSLRAGSLRTITHILLPLLRPAILS 259
Cdd:PRK09497  165 MVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIA 209
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
76-268 4.30e-03

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 38.27  E-value: 4.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042  76 VVAILAVWIAFNALLYGSIFYGSFTVNwgvDYTLTLDNFIKLFGQGMS-DGAWPSLLDTLLYAGIAAPITAIFGLLIAWV 154
Cdd:PRK10561    9 ITVIFFIWPAGEALWYSLQSVDPFGFS---SQFVGLDNFVALFHDSYYlDSFWTTIKFSTLVTVSGLLVSLFFAALVDYV 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2240206042 155 VvrqqfKGKKTIEFTTMLCFAVPGTVAGVSYILAFNSAPVYLT----------------GTAA-IVIISMVMRNVPVGIR 217
Cdd:PRK10561   86 V-----RGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLIThflaefgydwnhaqnsGQAMfLVVFASVWKQISYNFL 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2240206042 218 AGIAGLGQIDKSLDEASLSLRAGSLRTITHILLPLLRPAILSALIYSFVRA 268
Cdd:PRK10561  161 FFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYA 211
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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