NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2233833123|ref|WP_248445112|]
View 

MULTISPECIES: AAA family ATPase [Providencia]

Protein Classification

ATP-binding protein( domain architecture ID 10543770)

ATP-binding protein with an AAA (ATPases Associated with various cellular Activities) domain similar to Escherichia coli protein YehL

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
AAA_5 pfam07728
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ...
82-223 3.95e-45

AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


:

Pssm-ID: 400191 [Multi-domain]  Cd Length: 135  Bit Score: 151.68  E-value: 3.95e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2233833123  82 GLMLVGEPGTAKSMLSELLAAAISGDSGLTIQGTAGTTEDHIKYSWNYALLLAEgptekaLVSSPLYQGMQEGKIVRFEE 161
Cdd:pfam07728   1 GVLLVGPPGTGKTELAERLAAALSNRPVFYVQLTRDTTEEDLFGRRNIDPGGAS------WVDGPLVRAAREGEIAVLDE 74
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2233833123 162 ITRCPPEIQDVLVSLMSEKQMMIPEMkdNARISAKQ-GFNLIGTANLRDRGVHEMSSALKRRF 223
Cdd:pfam07728  75 INRANPDVLNSLLSLLDERRLLLPDG--GELVKAAPdGFRLIATMNPLDRGLNELSPALRSRF 135
 
Name Accession Description Interval E-value
AAA_5 pfam07728
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ...
82-223 3.95e-45

AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 400191 [Multi-domain]  Cd Length: 135  Bit Score: 151.68  E-value: 3.95e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2233833123  82 GLMLVGEPGTAKSMLSELLAAAISGDSGLTIQGTAGTTEDHIKYSWNYALLLAEgptekaLVSSPLYQGMQEGKIVRFEE 161
Cdd:pfam07728   1 GVLLVGPPGTGKTELAERLAAALSNRPVFYVQLTRDTTEEDLFGRRNIDPGGAS------WVDGPLVRAAREGEIAVLDE 74
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2233833123 162 ITRCPPEIQDVLVSLMSEKQMMIPEMkdNARISAKQ-GFNLIGTANLRDRGVHEMSSALKRRF 223
Cdd:pfam07728  75 INRANPDVLNSLLSLLDERRLLLPDG--GELVKAAPdGFRLIATMNPLDRGLNELSPALRSRF 135
MoxR COG0714
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ...
58-275 3.03e-18

MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 440478 [Multi-domain]  Cd Length: 292  Bit Score: 84.06  E-value: 3.03e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2233833123  58 NISAKFFGDDALVDRAIVTLLGKQGLMLVGEPGTAKSMLSELLAAAISGDSgLTIQGTAGTTEDHIKYSWNYalllAEGP 137
Cdd:COG0714     9 EIGKVYVGQEELIELVLIALLAGGHLLLEGVPGVGKTTLAKALARALGLPF-IRIQFTPDLLPSDILGTYIY----DQQT 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2233833123 138 TEKALVSSPLYQGmqegkIVRFEEITRCPPEIQDVLVSLMSEKQMMIPemkdNARISAKQGFNLIGTANLRDR-GVHEMS 216
Cdd:COG0714    84 GEFEFRPGPLFAN-----VLLADEINRAPPKTQSALLEAMEERQVTIP----GGTYKLPEPFLVIATQNPIEQeGTYPLP 154
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2233833123 217 SALKRRFNFETVRPIQDPAFEIELINKQLTAELADLNG---------------QVTIPSNVIELLVTTFQELRS 275
Cdd:COG0714   155 EAQLDRFLLKLYIGYPDAEEEREILRRHTGRHLAEVEPvlspeellalqelvrQVHVSEAVLDYIVDLVRATRE 228
 
Name Accession Description Interval E-value
AAA_5 pfam07728
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ...
82-223 3.95e-45

AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 400191 [Multi-domain]  Cd Length: 135  Bit Score: 151.68  E-value: 3.95e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2233833123  82 GLMLVGEPGTAKSMLSELLAAAISGDSGLTIQGTAGTTEDHIKYSWNYALLLAEgptekaLVSSPLYQGMQEGKIVRFEE 161
Cdd:pfam07728   1 GVLLVGPPGTGKTELAERLAAALSNRPVFYVQLTRDTTEEDLFGRRNIDPGGAS------WVDGPLVRAAREGEIAVLDE 74
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2233833123 162 ITRCPPEIQDVLVSLMSEKQMMIPEMkdNARISAKQ-GFNLIGTANLRDRGVHEMSSALKRRF 223
Cdd:pfam07728  75 INRANPDVLNSLLSLLDERRLLLPDG--GELVKAAPdGFRLIATMNPLDRGLNELSPALRSRF 135
MoxR COG0714
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ...
58-275 3.03e-18

MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 440478 [Multi-domain]  Cd Length: 292  Bit Score: 84.06  E-value: 3.03e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2233833123  58 NISAKFFGDDALVDRAIVTLLGKQGLMLVGEPGTAKSMLSELLAAAISGDSgLTIQGTAGTTEDHIKYSWNYalllAEGP 137
Cdd:COG0714     9 EIGKVYVGQEELIELVLIALLAGGHLLLEGVPGVGKTTLAKALARALGLPF-IRIQFTPDLLPSDILGTYIY----DQQT 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2233833123 138 TEKALVSSPLYQGmqegkIVRFEEITRCPPEIQDVLVSLMSEKQMMIPemkdNARISAKQGFNLIGTANLRDR-GVHEMS 216
Cdd:COG0714    84 GEFEFRPGPLFAN-----VLLADEINRAPPKTQSALLEAMEERQVTIP----GGTYKLPEPFLVIATQNPIEQeGTYPLP 154
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2233833123 217 SALKRRFNFETVRPIQDPAFEIELINKQLTAELADLNG---------------QVTIPSNVIELLVTTFQELRS 275
Cdd:COG0714   155 EAQLDRFLLKLYIGYPDAEEEREILRRHTGRHLAEVEPvlspeellalqelvrQVHVSEAVLDYIVDLVRATRE 228
bpMoxR pfam20030
MoxR domain in the MoxR-vWA-beta-propeller ternary systems; Core MoxR component domain of the ...
59-106 9.13e-05

MoxR domain in the MoxR-vWA-beta-propeller ternary systems; Core MoxR component domain of the MoxR-vWA-beta-propeller ternary systems, a class of NTP-dependent biological conflict systems.


Pssm-ID: 437862 [Multi-domain]  Cd Length: 205  Bit Score: 43.00  E-value: 9.13e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2233833123  59 ISAKFFGDDALVDRAIVTLLGKQGLMLVGEPGTAKSMLSELLAAAISG 106
Cdd:pfam20030  10 LKTGFVGKDEIIDLLGLALVARENLFLLGPPGTAKSALVRRLAARLGG 57
McrB COG1401
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB ...
6-253 3.70e-04

5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB [Defense mechanisms];


Pssm-ID: 441011 [Multi-domain]  Cd Length: 477  Bit Score: 42.45  E-value: 3.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2233833123   6 TIEGNILRESAEIRFADELARLTEADKQNPK-PQGWLRSPRAVRQFILGDESLNISAKFFGDDALVDRAIVTLLG-KQGL 83
Cdd:COG1401   145 EERAALETEVLEALEAELEELLAAPEDLSADaLAAELSAAEELYSEDLESEDDYLKDLLREKFEETLEAFLAALKtKKNV 224
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2233833123  84 MLVGEPGTAKSMLSELLAAAIsgdsgltiqgtAGTTEDHIKY-----SWNYA-LLLAEGPTEKA----LVSSPLYQGMQE 153
Cdd:COG1401   225 ILAGPPGTGKTYLARRLAEAL-----------GGEDNGRIEFvqfhpSWSYEdFLLGYRPSLDEgkyePTPGIFLRFCLK 293
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2233833123 154 GK-------IVRFEEITRCPPE------------------IQDVLVSLMSEKQMMIPEmkdNARIsakqgfnlIGTANLR 208
Cdd:COG1401   294 AEknpdkpyVLIIDEINRANVEkyfgellsllesdkrgeeLSIELPYSGEGEEFSIPP---NLYI--------IGTMNTD 362
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 2233833123 209 DRGVHEMSSALKRRFNFETVRPIQDpafeiELINKQLTAELADLN 253
Cdd:COG1401   363 DRSLALSDKALRRRFTFEFLDPDLD-----KLSNEEVVDLLEELN 402
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH