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Conserved domains on  [gi|2214601932|ref|WP_242923552|]
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flagellin [Caulobacter sp. CCUG 60055]

Protein Classification

flagellin( domain architecture ID 11442539)

flagellin polymerizes to form the filaments of bacterial flagella; includes flagellins and hook associated protein 3

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
5-276 8.94e-39

Flagellin and related hook-associated protein FlgL [Cell motility];


:

Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 135.76  E-value: 8.94e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932   5 SINTNVGALVALQNLAATSSELQTTQGRISTGLKIASAKDDGAIWAIAQSQRSTSSSLDSVKDSLSRVSSTIDVALAAGQ 84
Cdd:COG1344     2 RISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGALG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932  85 SVSDLLTQMQQKALAASDTSLDTASRSKLNQDFVSLRDQITKAVSNADFNGANLIKTGATDLAALAnadgtsrltvkaqs 164
Cdd:COG1344    82 EITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTATDTPPFQ-------------- 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932 165 lalggtnvtvaaTATIGTATLATTMVARIKTSLDNVNTALASLGTGSKALNTHLTFIGKLKDSLDAGVGNLVDADLAKES 244
Cdd:COG1344   148 ------------VDYQGDAGQRTAALGALDAALDNVSSARAELGARQNRLESAINNLSDLSENLTAALSRLEDADMAEAI 215

                         250       260       270
                  ....*....|....*....|....*....|..
gi 2214601932 245 AKLQALQTKQQLGIQALSIANssSQSLLGLFR 276
Cdd:COG1344   216 TRLTKLQTLLQAALAALAQAN--QLSLLDLLR 245
 
Name Accession Description Interval E-value
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
5-276 8.94e-39

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 135.76  E-value: 8.94e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932   5 SINTNVGALVALQNLAATSSELQTTQGRISTGLKIASAKDDGAIWAIAQSQRSTSSSLDSVKDSLSRVSSTIDVALAAGQ 84
Cdd:COG1344     2 RISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGALG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932  85 SVSDLLTQMQQKALAASDTSLDTASRSKLNQDFVSLRDQITKAVSNADFNGANLIKTGATDLAALAnadgtsrltvkaqs 164
Cdd:COG1344    82 EITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTATDTPPFQ-------------- 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932 165 lalggtnvtvaaTATIGTATLATTMVARIKTSLDNVNTALASLGTGSKALNTHLTFIGKLKDSLDAGVGNLVDADLAKES 244
Cdd:COG1344   148 ------------VDYQGDAGQRTAALGALDAALDNVSSARAELGARQNRLESAINNLSDLSENLTAALSRLEDADMAEAI 215

                         250       260       270
                  ....*....|....*....|....*....|..
gi 2214601932 245 AKLQALQTKQQLGIQALSIANssSQSLLGLFR 276
Cdd:COG1344   216 TRLTKLQTLLQAALAALAQAN--QLSLLDLLR 245
PRK12687 PRK12687
flagellin; Reviewed
 3-276 4.20e-35

flagellin; Reviewed


Pssm-ID: 105853 [Multi-domain]  Cd Length: 311  Bit Score: 128.24  E-value: 4.20e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932   3 MASINTNVGALVALQNLAATSSELQTTQGRISTGLKIASAKDDGAIWAIAQSQRSTSSSLDSVKDSLSRVSSTIDVALAA 82
Cdd:PRK12687    1 MSSLLTNTSAMTALQTLRNVSSSLATTQNRISTGYRVATASDNSAYWSIATTMRSDNEALSAVSDALGLGAATVDTMYTA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932  83 GQSV----SDLLTQMQQKALAASDTSLDtasRSKLNQDFVSLRDQITKAVSNADFNGANLIK------------------ 140
Cdd:PRK12687   81 LTSVvgdsKSGLTALKAKLVAAREPGID---RTKIQSEITAIQNDLKNTAGLAVFNGENWLSvdsspssynatksvvssf 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932 141 ------------TGATDLAALANADGTSRLTVKAQSLALGGTNVTVAA------TATIGTATLATTMVARIKTSLDNVNT 202
Cdd:PRK12687  158 trvggtvaiktiDVNIAKLALYDTNGSSTTGILDKTVTVGTATASVSSidihllTDSATDLTKLDGYIGIVDQALGSVTQ 237

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2214601932 203 ALASLGTGSKALNTHLTFIGKLKDSLDAGVGNLVDADLAKESAKLQALQTKQQLGIQALSIANSSSQSLLGLFR 276
Cdd:PRK12687  238 ASADLGATKTRIDSNSNFVKSLRDAIDRGVGQLVDADMNAESTRLQALQTQQQLGIQALSIANQGSQSILSLFK 311
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 6-138 1.58e-18

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 79.69  E-value: 1.58e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932   6 INTNVGALVALQNLAATSSELQTTQGRISTGLKIASAKDDGAIWAIAQSQRSTSSSLDSVKDSLSRVSSTIDVALAAGQS 85
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2214601932  86 VSDLLTQMQQKALAASDTSLDTASRSKLNQDFVSLRDQITKAVSNADFNGANL 138
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYL 133
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 6-268 2.94e-07

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 50.81  E-value: 2.94e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932   6 INTNVGALVALQNLAATSSELQTTQGRISTGLKIASAKDDGAIWAIAQSQRSTSSSLDSVKDSLSRVSSTIDVALAAGQS 85
Cdd:TIGR02550   2 VSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932  86 VSDLLTQMQQKALAASDTSLDTASRSKLNQDFVSLRDQITKAVSNADFNGANLIKTGATDLAALA---------NADGTS 156
Cdd:TIGR02550  82 VGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGTKTDTPPFSedeggevtyNGDGGQ 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932 157 RLTVKAQSLALG----GTNVTVAATATIGTATLATTMVAR------------------------IKTSLDNVNTALASLG 208
Cdd:TIGR02550 162 RKVQVASNRSMPighpGDKVFMSIPNNDKSVFSTGDDLIDalkkledalssgdakaalsaslndLDKALDNVLSARAEVG 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932 209 TGSKALNTHLTFIGKLKDSLDAGVGNLVDADLAKESAKLQALQTKQQLGIQALSIANSSS 268
Cdd:TIGR02550 242 ARLNRLENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAKIQQLS 301
 
Name Accession Description Interval E-value
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
5-276 8.94e-39

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 135.76  E-value: 8.94e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932   5 SINTNVGALVALQNLAATSSELQTTQGRISTGLKIASAKDDGAIWAIAQSQRSTSSSLDSVKDSLSRVSSTIDVALAAGQ 84
Cdd:COG1344     2 RISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGALG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932  85 SVSDLLTQMQQKALAASDTSLDTASRSKLNQDFVSLRDQITKAVSNADFNGANLIKTGATDLAALAnadgtsrltvkaqs 164
Cdd:COG1344    82 EITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTATDTPPFQ-------------- 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932 165 lalggtnvtvaaTATIGTATLATTMVARIKTSLDNVNTALASLGTGSKALNTHLTFIGKLKDSLDAGVGNLVDADLAKES 244
Cdd:COG1344   148 ------------VDYQGDAGQRTAALGALDAALDNVSSARAELGARQNRLESAINNLSDLSENLTAALSRLEDADMAEAI 215

                         250       260       270
                  ....*....|....*....|....*....|..
gi 2214601932 245 AKLQALQTKQQLGIQALSIANssSQSLLGLFR 276
Cdd:COG1344   216 TRLTKLQTLLQAALAALAQAN--QLSLLDLLR 245
PRK12687 PRK12687
flagellin; Reviewed
 3-276 4.20e-35

flagellin; Reviewed


Pssm-ID: 105853 [Multi-domain]  Cd Length: 311  Bit Score: 128.24  E-value: 4.20e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932   3 MASINTNVGALVALQNLAATSSELQTTQGRISTGLKIASAKDDGAIWAIAQSQRSTSSSLDSVKDSLSRVSSTIDVALAA 82
Cdd:PRK12687    1 MSSLLTNTSAMTALQTLRNVSSSLATTQNRISTGYRVATASDNSAYWSIATTMRSDNEALSAVSDALGLGAATVDTMYTA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932  83 GQSV----SDLLTQMQQKALAASDTSLDtasRSKLNQDFVSLRDQITKAVSNADFNGANLIK------------------ 140
Cdd:PRK12687   81 LTSVvgdsKSGLTALKAKLVAAREPGID---RTKIQSEITAIQNDLKNTAGLAVFNGENWLSvdsspssynatksvvssf 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932 141 ------------TGATDLAALANADGTSRLTVKAQSLALGGTNVTVAA------TATIGTATLATTMVARIKTSLDNVNT 202
Cdd:PRK12687  158 trvggtvaiktiDVNIAKLALYDTNGSSTTGILDKTVTVGTATASVSSidihllTDSATDLTKLDGYIGIVDQALGSVTQ 237

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2214601932 203 ALASLGTGSKALNTHLTFIGKLKDSLDAGVGNLVDADLAKESAKLQALQTKQQLGIQALSIANSSSQSLLGLFR 276
Cdd:PRK12687  238 ASADLGATKTRIDSNSNFVKSLRDAIDRGVGQLVDADMNAESTRLQALQTQQQLGIQALSIANQGSQSILSLFK 311
PRK12802 PRK12802
flagellin; Provisional
 3-274 1.48e-21

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 91.48  E-value: 1.48e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932   3 MASINTNVGALVALQNLAATSSELQTTQGRISTGLKIASAKDDGAIWAIAQSQRSTSSSLDSVKDSLSRVSSTIDVALAA 82
Cdd:PRK12802    2 ALTVNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAEGA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932  83 GQSVSDLLTQMQQKALAASDTSLDTASRSKLNQDFVSLRDQITKAVSNADFNGANLI--KTGATDLAALANADGTSRLTV 160
Cdd:PRK12802   82 LQESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLNGKNLLdgSAGTMTFQVGANTGQSNQITF 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932 161 ------KAQSLALGGTNVTVAATATIGTATLATTMVArIKTSLDNVNTALASLGTGSKALNTHLTFIGKLKDSLDAGVGN 234
Cdd:PRK12802  162 glsasfDATGLGVGSGTLITGADSAAAETNAQAAITA-IDAALQTINTTRADLGAAQNRLQSTISNLQNINENASAARGR 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 2214601932 235 LVDADLAKESAKLQALQTKQQLGIQALSIANSSSQSLLGL 274
Cdd:PRK12802  241 VQDTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVLKL 280
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 6-138 1.58e-18

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 79.69  E-value: 1.58e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932   6 INTNVGALVALQNLAATSSELQTTQGRISTGLKIASAKDDGAIWAIAQSQRSTSSSLDSVKDSLSRVSSTIDVALAAGQS 85
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2214601932  86 VSDLLTQMQQKALAASDTSLDTASRSKLNQDFVSLRDQITKAVSNADFNGANL 138
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYL 133
PRK12807 PRK12807
flagellin; Provisional
 6-269 9.01e-14

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 69.85  E-value: 9.01e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932   6 INTNVGALVALQNLAATSSELQTTQGRISTGLKIASAKDDGAIWAIAQSQRSTSSSLDSVKDSLSRVSSTIDVALAAGQS 85
Cdd:PRK12807    3 INTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEKASQNTQDGMSLIRTAESAMNS 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932  86 VSDLLTQMQQKALAASDTSLDTASRSKLNQDFVSLRDQITKAVSNADFNGANLIktgATDLAALANADGTSRLTVKAQSL 165
Cdd:PRK12807   83 VSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNLL---AGTGAVTIGSTSISGAEISIETL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932 166 ALGGTNVTVAATATIGTATLATTMVARIKTSLDNVNTALASLGTGSKALNT---HLTFIGKLKDSLDAGVGNL------- 235
Cdd:PRK12807  160 DSSATNQQITIKLANTTAEKLGIDATTSNISISGAASALAAISALNTALNTvagNRATLGATLNRLDRNVENLnnqatnm 239

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 2214601932 236 -------VDADLAKESAKLQALQTKQQLGIQALSIANSSSQ 269
Cdd:PRK12807  240 asaasqiEDADMAKEMSEMTKFKILNEAGISMLSQANQTPQ 280
PRK08869 PRK08869
polar flagellin E;
3-139 9.60e-13

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 67.26  E-value: 9.60e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932   3 MASINTNVGALVALQNLAATSSELQTTQGRISTGLKIASAKDDGAIWAIAQSQRSTSSSLDSVKDSLSRVSSTIDVALAA 82
Cdd:PRK08869    1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2214601932  83 GQSVSDLLTQMQQKALAASDTSLDTASRSKLNQDFVSLRDQITKAVSNADFNGANLI 139
Cdd:PRK08869   81 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLL 137
PRK12805 PRK12805
FliC/FljB family flagellin;
6-274 3.71e-10

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 59.11  E-value: 3.71e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932   6 INTNVGALVALQNLAATSSELQTTQGRISTGLKIASAKDDGAIWAIAQSQRSTSSSLDSVKDSLSRVSSTIDVALAAGQS 85
Cdd:PRK12805    3 VNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALSS 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932  86 VSDLLTQMQQKALAASDTSLDTASRSKLNQDFVSLRDQITKAVSNADFNGANLIKTGATDLAA------------LANAD 153
Cdd:PRK12805   83 MSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTATGAATqvsiqasdkandLINID 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932 154 GTSRLTVKAQSLALG-GTNVTVAATATIGTATLATTMVARIKTSLDNVNTALASLGTGSKALNTHLTFIGKLKDSLDAGV 232
Cdd:PRK12805  163 LFNAKGLSAGTITLGsGSTVAGYSALSVADADSSQEATEAIDELINNISNGRALLGAGMSRLSYNVSNVNNQSIATKASA 242

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 2214601932 233 GNLVDADLAKESAKLQALQTKQQLGIQALSIANSSSQSLLGL 274
Cdd:PRK12805  243 SSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQL 284
PRK13589 PRK13589
flagellin A;
6-145 5.34e-09

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 56.57  E-value: 5.34e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932   6 INTNVGALVALQNLAATSSELQTTQGRISTGLKIASAKDDGAIWAIAQSQRSTSSSLDSVKDSLSRVSSTIDVALAAGQS 85
Cdd:PRK13589    5 INTNIGALNAHANSVVNSRELDKSLSRLSSGLRINSAADDASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAMDE 84

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932  86 VSDLLTQMQQKALAASDTSLDTASRSKLNQDFVSLRDQITKAVSNADFNGANLIKTGATD 145
Cdd:PRK13589   85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFTN 144
PRK12806 PRK12806
flagellin; Provisional
 6-139 8.25e-09

flagellin; Provisional


Pssm-ID: 183761 [Multi-domain]  Cd Length: 475  Bit Score: 55.85  E-value: 8.25e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932   6 INTNVGALVALQNLAATSSELQTTQGRISTGLKIASAKDDGAIWAIAQSQRSTSSSLDSVKDSLSRVSSTIDVALAAGQS 85
Cdd:PRK12806    5 INTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEGAMQE 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2214601932  86 VSDLLTQMQQKALAASDTSLDTASRSKLNQDFVSLRDQITKAVSNADFNGANLI 139
Cdd:PRK12806   85 TTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTEFNGQRIL 138
Flagellin_C pfam00700
Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial ...
 193-275 7.73e-08

Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425827 [Multi-domain]  Cd Length: 86  Bit Score: 48.87  E-value: 7.73e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932 193 IKTSLDNVNTALASLGTGSKALNTHLTFIGKLKDSLDAGVGNLVDADLAKESAKLQALQTKQQLGIQALSIANSSSQSLL 272
Cdd:pfam00700   4 IDEAITDLDSVRADLGAVQNRLESATTNLNNQQDNLKAAISRIEDVDPAEESTRMTKLQIQIQASYSLLSQANQLPQSLL 83


                  ...
gi 2214601932 273 GLF 275
Cdd:pfam00700  84 NLL 86
PRK08411 PRK08411
flagellin; Reviewed
 6-145 1.26e-07

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 52.30  E-value: 1.26e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932   6 INTNVGALVALQNLAATSSELQTTQGRISTGLKIASAKDDGAIWAIAQSQRSTSSSLDSVKDSLSRVSSTIDVALAAGQS 85
Cdd:PRK08411    5 INTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDE 84

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932  86 VSDLLTQMQQKALAASDTSLDTASRSKLNQDFVSLRDQITKAVSNADFNGANLIKTGATD 145
Cdd:PRK08411   85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFTN 144
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 6-268 2.94e-07

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 50.81  E-value: 2.94e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932   6 INTNVGALVALQNLAATSSELQTTQGRISTGLKIASAKDDGAIWAIAQSQRSTSSSLDSVKDSLSRVSSTIDVALAAGQS 85
Cdd:TIGR02550   2 VSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932  86 VSDLLTQMQQKALAASDTSLDTASRSKLNQDFVSLRDQITKAVSNADFNGANLIKTGATDLAALA---------NADGTS 156
Cdd:TIGR02550  82 VGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGTKTDTPPFSedeggevtyNGDGGQ 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932 157 RLTVKAQSLALG----GTNVTVAATATIGTATLATTMVAR------------------------IKTSLDNVNTALASLG 208
Cdd:TIGR02550 162 RKVQVASNRSMPighpGDKVFMSIPNNDKSVFSTGDDLIDalkkledalssgdakaalsaslndLDKALDNVLSARAEVG 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932 209 TGSKALNTHLTFIGKLKDSLDAGVGNLVDADLAKESAKLQALQTKQQLGIQALSIANSSS 268
Cdd:TIGR02550 242 ARLNRLENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAKIQQLS 301
PRK12804 PRK12804
flagellin; Provisional
 6-276 2.97e-07

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 50.77  E-value: 2.97e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932   6 INTNVGALVALQNLAATSSELQTTQGRISTGLKIASAKDDGAIWAIAQSQRSTSSSLDSVKDSLSRVSSTIDVALAAGQS 85
Cdd:PRK12804    3 INHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGALTE 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932  86 VSDLLTQMQQKALAASDT-SLDTASRSKLNQDFVSLRDQITKAVSNADFNGANLIKTGATDLAALAN---------ADGT 155
Cdd:PRK12804   83 THSILQRVRELVVQAGNTgTQDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKLLDGTFKPAAPAAGtksltfqigANAA 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932 156 SRLTVKAQSL---ALGGT---------------NVTVAATATIGTATLATTMVARIKTSLDNVNTALASLGTGSKALNTH 217
Cdd:PRK12804  163 QQLSVNIEAMsadALGVKdtdgtlvtgksvsdiDVTKFANAAAAADGGFDDQLKIVDGAIKQVSDQRSKLGAVQNRLEHT 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2214601932 218 LTFIGKLKDSLDAGVGNLVDADLAKESAKLQALQTKQQLGIQALSIANSSSQSLLGLFR 276
Cdd:PRK12804  243 INNLGASGENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQQPQNVLQLLR 301
PRK14708 PRK14708
flagellin; Provisional
 108-276 3.31e-07

flagellin; Provisional


Pssm-ID: 173171 [Multi-domain]  Cd Length: 888  Bit Score: 51.07  E-value: 3.31e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932 108 ASRSKLNQDFVSLRDQITKAVSNADFNGANLIKtgATDLAALANADGTSRLTVKAQSLALGGTNVTVAATATIGTATLAT 187
Cdd:PRK14708  721 NTRAGLVKQFNDVLDQIKTTAQDASFNGVNLLN--GDTLKLVFNETGKSTISIQGVTFNPTGLGLSTLVSGVDFIDNNAT 798

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932 188 TMVariktsLDNVNTALASLGTGSKALNTHLT-------FIGKLKDSLDAGVGNLVDADLAKESAKLQALQTKQQLGIQA 260
Cdd:PRK14708  799 NAV------LAKLSTASTTLRSQASAFGSNLSivqarqdFSKSLINVLQTGSSNLTLADTNEEAANSQALSTRQSIAVSA 872

                         170
                  ....*....|....*.
gi 2214601932 261 LSIANSSSQSLLGLFR 276
Cdd:PRK14708  873 LSLANQSQQGVLQLLR 888
PRK12584 PRK12584
flagellin A; Reviewed
 6-139 3.99e-07

flagellin A; Reviewed


Pssm-ID: 237146 [Multi-domain]  Cd Length: 510  Bit Score: 50.68  E-value: 3.99e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932   6 INTNVGALVALQNLAATSSELQTTQGRISTGLKIASAKDDGAIWAIAQSQRSTSSSLDSVKDSLSRVSSTIDVALAAGQS 85
Cdd:PRK12584    5 VNTNINALNAHVQSALTQNALKTSLEKLSSGLRINKAADDASGMTIADSLRSQASSLGQAIANTNDGMGIIQVADKAMDE 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2214601932  86 VSDLLTQMQQKALAASDTSLDTASRSKLNQDFVSLRDQITKAVSNADFNGANLI 139
Cdd:PRK12584   85 QLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGNTTTYNGQALL 138
PRK13588 PRK13588
flagellin B; Provisional
 6-139 9.46e-07

flagellin B; Provisional


Pssm-ID: 237440 [Multi-domain]  Cd Length: 514  Bit Score: 49.48  E-value: 9.46e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932   6 INTNVGALVALQNLAATSSELQTTQGRISTGLKIASAKDDGAIWAIAQSQRSTSSSLDSVKDSLSRVSSTIDVALAAGQS 85
Cdd:PRK13588    5 INTNIAALNAHAVGVQNNRDLSSSLEKLSSGLRINKAADDASGMAIADSLRSQSANLGQAIRNANDAIGMVQTADKAMDE 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2214601932  86 VSDLLTQMQQKALAASDTSLDTASRSKLNQDFVSLRDQITKAVSNADFNGANLI 139
Cdd:PRK13588   85 QIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQML 138
PRK12808 PRK12808
flagellin; Provisional
 6-167 1.04e-06

flagellin; Provisional


Pssm-ID: 237212 [Multi-domain]  Cd Length: 476  Bit Score: 49.57  E-value: 1.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932   6 INTNVGALVALQNLAATSSELQTTQGRISTGLKIASAKDDGAIWAIAQSQRSTSSSLDSVKDSLSRVSSTIDVALAAGQS 85
Cdd:PRK12808    3 INTNINSMRTQEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLGVAANNTQDGMSLIRTADSAMNS 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932  86 VSDLLTQMQQKALAASDTSLDTASRSKLNQDFVSLRDQITKAVSNADFNGANLIKTGAT-DLAALANADGTSRLTVKAQS 164
Cdd:PRK12808   83 VSNILLRMRDIANQSANGTNTDKNQAALQKEFAELQKQITYIADNTQFNDKNLLNSNSSiNIQTLDSSDGDKQIGIDLKS 162


                  ...
gi 2214601932 165 LAL 167
Cdd:PRK12808  163 ATL 165
PRK12688 PRK12688
flagellin; Reviewed
 108-276 1.43e-06

flagellin; Reviewed


Pssm-ID: 171664 [Multi-domain]  Cd Length: 751  Bit Score: 49.11  E-value: 1.43e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932 108 ASRSKLNQDFVSLRDQITKAVSNADFNGANLIktGATDLAALANADGTSRLTVKAQSLALGGTNVTVAATATIGTATLAT 187
Cdd:PRK12688  584 TTRANLVKQYNNILNQIDTTSQDASFNGVNLL--NGDTLKLVFNETGKSTLSIQGVTFNPAGLGLSALTSGTDFIDNAAT 661

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932 188 TMV-ARIKTSLDNVNTALASLGTGSKALNTHLTFIGKLKDSLDAGVGNLVDADLAKESAKLQALQTKQQLGIQALSIANS 266
Cdd:PRK12688  662 NKVlANLNTASSTLRSQASALGSNLSIVQVRQDFSKNLINVLQTGSSNLTLADTNEEAANSQALSTRQSIAVSALSLANQ 741

                         170
                  ....*....|
gi 2214601932 267 SSQSLLGLFR 276
Cdd:PRK12688  742 SQQSVLQLLR 751
PRK06819 PRK06819
FliC/FljB family flagellin;
3-52 9.23e-05

FliC/FljB family flagellin;


Pssm-ID: 235867 [Multi-domain]  Cd Length: 376  Bit Score: 43.23  E-value: 9.23e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2214601932   3 MASINTNVGALVALQNLAATSSELQTTQGRISTGLKIASAKDDGAIWAIA 52
Cdd:PRK06819    2 AAVINTNSLSLLTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIA 51
PRK12803 PRK12803
flagellin; Provisional
 6-139 1.74e-04

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 42.49  E-value: 1.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932   6 INTNVGALVALQNLAATSSELQTTQGRISTGLKIASAKDDGAIWAIAQSQRSTSSSLDSVKDSLSRVSSTIDVALAAGQS 85
Cdd:PRK12803    3 INHNTSAINASRNNSINAANLSKTQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNLNE 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2214601932  86 VSDLLTQMQQKALAASDTSLDTASRSKLNQDFVSLRDQITKAVSNADFNGANLI 139
Cdd:PRK12803   83 VEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQMHML 136
flgL PRK07192
flagellar hook-associated protein FlgL; Reviewed
 6-252 2.93e-04

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 235956 [Multi-domain]  Cd Length: 305  Bit Score: 41.54  E-value: 2.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932   6 INTNVGALVALQNLAATSSELQTTQGRISTGLKIASAKDD--GAIWA--IAQSQRSTS---SSLDSVKDSLSRVSSTIDv 78
Cdd:PRK07192    3 ISTNTLYSTMLRSIQQLQAGLGKLQQQMSTGKRILTPSDDpiASARLleLSREQSNNSqyaDNIANLSNSLNNQEGHLS- 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932  79 alaagqSVSDLLTQMQQKALAASDTSLDTASRSKLNQDFVSLRDQITKAVSNADFNGANLIKTGATDLAALANADGTSRL 158
Cdd:PRK07192   82 ------GVNDQLQSIRSLLVAAGNGSLSDEDRSAMATELRSMLDSLLGLANAKDSEGNYLFSGTASNTQPITFDAAGGTY 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932 159 TVKAQS----------------------LALGGTNVT-------------VAATATIGTATLATTMVARIKTSLDNVNTA 203
Cdd:PRK07192  156 TYNGNSdqrqvqvgegvqmpvnvtgqsvFQGGGLDVFntldklidlletpALPAADAALTAAVDEALGAIDDALDNVLTV 235

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 2214601932 204 LASLGTGSKALNTHLTFIGKLKDSLDAGVGNLVDADLAKESAKLQALQT 252
Cdd:PRK07192  236 RTELGSRQNELDLLDGNHEDRKLQYQKILSDLQDLDYAEALSDLSNQMA 284
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 16-135 4.24e-04

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 41.13  E-value: 4.24e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214601932  16 LQNLAATSSELQTTQGRISTGLKIASAKDDGAIWAIAQSQRSTSSSLDSVKDSLSRVSSTIDVALAAGQSVSDLLTQMQQ 95
Cdd:PRK07701   13 LRNINSNLEKLDKYQEQLSTGKKITRPSDDPVVAMKSLRYRTDLAEVEQYQKNASDAKSWLENTESALDQATDILQRARE 92

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 2214601932  96 KALAASDTSLDTASRSKLNQDFVSLRDQITKaVSNADFNG 135
Cdd:PRK07701   93 LAVQAANGTNTQTDRQAIAQEIEQLKEQLIQ-IANTQYNG 131
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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