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Conserved domains on  [gi|2214417999|ref|WP_242822087|]
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IS66 family transposase [Ethanoligenens harbinense]

Protein Classification

IS66 family transposase( domain architecture ID 15980350)

IS66 family transposase binds to the end of a transposon and catalyze the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
transpos_IS66 NF033517
IS66 family transposase; Members of this protein family are DDE transposases from the IS66 ...
51-455 2.35e-150

IS66 family transposase; Members of this protein family are DDE transposases from the IS66 family insertion sequences, which typically consist of two accessary genes (TnpA and TnpB) and the third gene encoding the transposase.


:

Pssm-ID: 468053 [Multi-domain]  Cd Length: 388  Bit Score: 433.55  E-value: 2.35e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999  51 RRKTRlttDKLPEDLPVETIEHELPIeariCPDCGCP-LHKMGEDIREELKIIPAKAVIVRHVRHVYACRHCEEssdrvp 129
Cdd:NF033517    5 KGKTR---KPLPDHLPREEVVHEPES----CPCCGGAlLHRIGEEVSEQLEIIPAKFEVTEYVRPKYACRHCGT------ 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999 130 IVKAEMPKPVIKGGFASPESVAHIAVQKFVMGSPLYRQEQEWAQ-SGILLSRQTMSNWLIRACEdWLEPIYQEMKRQLCN 208
Cdd:NF033517   72 VVQAPAPARVIPKGQAGPRLLAHVAVLKYADHLPLYRQQQILARlFGIELSRGTLANWVGRAAE-LLEPLYDALKEELLA 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999 209 HQVLHADETTLQVLhEDGKpaQSKSYMWLYRTSgeakRQIVLYDYQRDRKHIRPKDFLEDFSGFLHADGYDGYHKLpDRI 288
Cdd:NF033517  151 APVLHADETGVPVL-EPGR--GKTGWLWVYASA----PPAVLFDYAPSRGGEVPEALLEGFNGVLQSDGYAGYNKL-AAV 222
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999 289 TVVGCWAHLRRKFDEALqtlpkDKRKSSDAAKGIAYCDRLFHLEKQFTLLTPEDRLKEREQQSKPVVEAFYAWV--GSLR 366
Cdd:NF033517  223 THAGCWAHLRRKFQEAA-----ERKGKSIAEEALKRIGELYAIERRIRGLSPEERRALRQERSRPLLDELKAWLeaGLAG 297
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999 367 ELPKTLMGKAIHYAQSQRMYLVRYLLDGRLEISNNRAENAIRPFVMGRKNWLFSNTPNGAKASAIYYSLIVSARENGLVP 446
Cdd:NF033517  298 VLPKSPLGKAIRYLLNRWDALLRFLDDGRVPIDNNAAERAIRPVVLGRKNSLFAGSDRGAEAAARIYSLIETAKLNGLNP 377

                  ....*....
gi 2214417999 447 FEYLTKIFT 455
Cdd:NF033517  378 YAYLRDVLT 386
LZ_Tnp_IS66 pfam13007
Transposase C of IS166 homeodomain; This is a leucine-zipper-like or homeodomain-like region ...
1-70 4.97e-13

Transposase C of IS166 homeodomain; This is a leucine-zipper-like or homeodomain-like region of transposase TnpC of insertion element IS66.


:

Pssm-ID: 463771 [Multi-domain]  Cd Length: 67  Bit Score: 63.82  E-value: 4.97e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999   1 MEQFRLAKRKQFGASSEQTDNEQLCLFNEaeqtaDLTVPEPETTEVKAHYRRKTRLTTDKLPEDLPVETI 70
Cdd:pfam13007   3 EEQLALLKRRLFGRSSEKLDPEQLELALE-----ELEAEEAEVEAEARASKKRKKPGRKPLPAHLPREEV 67
 
Name Accession Description Interval E-value
transpos_IS66 NF033517
IS66 family transposase; Members of this protein family are DDE transposases from the IS66 ...
51-455 2.35e-150

IS66 family transposase; Members of this protein family are DDE transposases from the IS66 family insertion sequences, which typically consist of two accessary genes (TnpA and TnpB) and the third gene encoding the transposase.


Pssm-ID: 468053 [Multi-domain]  Cd Length: 388  Bit Score: 433.55  E-value: 2.35e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999  51 RRKTRlttDKLPEDLPVETIEHELPIeariCPDCGCP-LHKMGEDIREELKIIPAKAVIVRHVRHVYACRHCEEssdrvp 129
Cdd:NF033517    5 KGKTR---KPLPDHLPREEVVHEPES----CPCCGGAlLHRIGEEVSEQLEIIPAKFEVTEYVRPKYACRHCGT------ 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999 130 IVKAEMPKPVIKGGFASPESVAHIAVQKFVMGSPLYRQEQEWAQ-SGILLSRQTMSNWLIRACEdWLEPIYQEMKRQLCN 208
Cdd:NF033517   72 VVQAPAPARVIPKGQAGPRLLAHVAVLKYADHLPLYRQQQILARlFGIELSRGTLANWVGRAAE-LLEPLYDALKEELLA 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999 209 HQVLHADETTLQVLhEDGKpaQSKSYMWLYRTSgeakRQIVLYDYQRDRKHIRPKDFLEDFSGFLHADGYDGYHKLpDRI 288
Cdd:NF033517  151 APVLHADETGVPVL-EPGR--GKTGWLWVYASA----PPAVLFDYAPSRGGEVPEALLEGFNGVLQSDGYAGYNKL-AAV 222
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999 289 TVVGCWAHLRRKFDEALqtlpkDKRKSSDAAKGIAYCDRLFHLEKQFTLLTPEDRLKEREQQSKPVVEAFYAWV--GSLR 366
Cdd:NF033517  223 THAGCWAHLRRKFQEAA-----ERKGKSIAEEALKRIGELYAIERRIRGLSPEERRALRQERSRPLLDELKAWLeaGLAG 297
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999 367 ELPKTLMGKAIHYAQSQRMYLVRYLLDGRLEISNNRAENAIRPFVMGRKNWLFSNTPNGAKASAIYYSLIVSARENGLVP 446
Cdd:NF033517  298 VLPKSPLGKAIRYLLNRWDALLRFLDDGRVPIDNNAAERAIRPVVLGRKNSLFAGSDRGAEAAARIYSLIETAKLNGLNP 377

                  ....*....
gi 2214417999 447 FEYLTKIFT 455
Cdd:NF033517  378 YAYLRDVLT 386
DDE_Tnp_IS66 pfam03050
Transposase IS66 family; Transposase proteins are necessary for efficient DNA transposition. ...
142-428 5.76e-115

Transposase IS66 family; Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.


Pssm-ID: 427113 [Multi-domain]  Cd Length: 281  Bit Score: 339.61  E-value: 5.76e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999 142 GGFASPESVAHIAVQKFVMGSPLYRQEQEWAQSGILLSRQTMSNWLIRACEdWLEPIYQEMKRQLCNHQVLHADETTLQV 221
Cdd:pfam03050   1 KSLAGPSLLALILVLKYADHLPLYRQEDILARLGVELSRGTLANWVGRAAE-LLEPLVDALRAALLESPVIHADETPLRV 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999 222 LhEDGKPAQSKSYMWLYRTSGEAKrQIVLYDYQRDRKHIRPKDFLEDFSGFLHADGYDGYHKL-PDRITVVGCWAHLRRK 300
Cdd:pfam03050  80 L-KPGRGKGKKGWLWVYVTDDRPP-PAVLFHYHPSRGGEHPQALLGGFRGVLQTDGYAGYNKLaRGQVTHAGCWAHARRK 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999 301 FDEALqtlpkdKRKSSDAAKGIAYCDRLFHLEKQFTLLTPEDRLKEREQQSKPVVEAFYAWVGSLRE--LPKTLMGKAIH 378
Cdd:pfam03050 158 FFDAH------KAGSPLAAQALARIGKLYAIEREIRDLTPEERLALRQEYSRPLLDELEAWLEEQLRgvLPKSALGKAIR 231
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 2214417999 379 YAQSQRMYLVRYLLDGRLEISNNRAENAIRPFVMGRKNWLFSNTPNGAKA 428
Cdd:pfam03050 232 YLLNRWEALLRFLEDGRVPIDNNQAERAIRPVVLGRKNWLFAGSDEGAEA 281
COG3436 COG3436
Transposase [Mobilome: prophages, transposons];
1-419 1.57e-95

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442662 [Multi-domain]  Cd Length: 416  Bit Score: 294.63  E-value: 1.57e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999   1 MEQFRLAKRKQFGASSEQTDNEQLCLFNEAEQTADLTVPEPETTEVKAHYRRKTRlttdKLPEDLPVETIEHElPIEARI 80
Cdd:COG3436    14 LERLRLRRLRERESRLESQPELQLLELEEEAEEEEEAAEEAEAKTTKKKPKPGRK----PMPEHLPREEVLHE-PTDMRK 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999  81 CPDcgcpLHKMGEDIREELKIIPAKAVIVRHVRHVYACRHCEESSdrvpIVKAEMPKPVIKGGFASPESVAHIAVQKFVM 160
Cdd:COG3436    89 IDG----LAAIGEEVSEELDLDPGALFVFRNRRDKYKCLYCDGTG----LVYAPAPAKRLEKGLAGPGLLAHILVSKFVD 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999 161 GSPLYRQEQEWAQSGILLSRQTMSNWLIRACEdWLEPIYQEMKRQLCNHQVLHADETTLQVLHEDGKPAQSKSYMWLYRT 240
Cdd:COG3436   161 HLPLYRQEEIFARLGVELSRSTLLNWVGRAAE-LLEPLLEGLDERLLAAPVLHADETPVQVLDEGKGKTVTASYWWVYRD 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999 241 sGEAKRQIVLYDYQRDRKHIRPKDFLEDFSGFLHADGYDGYHKLPDRITVVGCWAHLRRKFDEALQTLPKDKRKSSDAAK 320
Cdd:COG3436   240 -GRPSRGPVVYDAYRSRRGARAGLVLDGGLGGGLGDDYADGYAALLRLAELGCAAAARRRRKAAAAALKKLAKKAAAAAA 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999 321 GIAYCDRLFHLEKQFTLLTPEDRLKEREQQSKPVVEAFYAWvgSLRELPKTLMGKAIHYAQSQRMYLVRYLLDGRLEISN 400
Cdd:COG3436   319 GLAAEEALLRIEELRKEERLRERRRERRPRRLLLLKALLLL--LLLLLPLLPPGKALLYAALARAARLLALLDRLLDLLR 396
                         410
                  ....*....|....*....
gi 2214417999 401 NRAENAIRPFVMGRKNWLF 419
Cdd:COG3436   397 NNDENNAERNALRRRNNLF 415
LZ_Tnp_IS66 pfam13007
Transposase C of IS166 homeodomain; This is a leucine-zipper-like or homeodomain-like region ...
1-70 4.97e-13

Transposase C of IS166 homeodomain; This is a leucine-zipper-like or homeodomain-like region of transposase TnpC of insertion element IS66.


Pssm-ID: 463771 [Multi-domain]  Cd Length: 67  Bit Score: 63.82  E-value: 4.97e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999   1 MEQFRLAKRKQFGASSEQTDNEQLCLFNEaeqtaDLTVPEPETTEVKAHYRRKTRLTTDKLPEDLPVETI 70
Cdd:pfam13007   3 EEQLALLKRRLFGRSSEKLDPEQLELALE-----ELEAEEAEVEAEARASKKRKKPGRKPLPAHLPREEV 67
 
Name Accession Description Interval E-value
transpos_IS66 NF033517
IS66 family transposase; Members of this protein family are DDE transposases from the IS66 ...
51-455 2.35e-150

IS66 family transposase; Members of this protein family are DDE transposases from the IS66 family insertion sequences, which typically consist of two accessary genes (TnpA and TnpB) and the third gene encoding the transposase.


Pssm-ID: 468053 [Multi-domain]  Cd Length: 388  Bit Score: 433.55  E-value: 2.35e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999  51 RRKTRlttDKLPEDLPVETIEHELPIeariCPDCGCP-LHKMGEDIREELKIIPAKAVIVRHVRHVYACRHCEEssdrvp 129
Cdd:NF033517    5 KGKTR---KPLPDHLPREEVVHEPES----CPCCGGAlLHRIGEEVSEQLEIIPAKFEVTEYVRPKYACRHCGT------ 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999 130 IVKAEMPKPVIKGGFASPESVAHIAVQKFVMGSPLYRQEQEWAQ-SGILLSRQTMSNWLIRACEdWLEPIYQEMKRQLCN 208
Cdd:NF033517   72 VVQAPAPARVIPKGQAGPRLLAHVAVLKYADHLPLYRQQQILARlFGIELSRGTLANWVGRAAE-LLEPLYDALKEELLA 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999 209 HQVLHADETTLQVLhEDGKpaQSKSYMWLYRTSgeakRQIVLYDYQRDRKHIRPKDFLEDFSGFLHADGYDGYHKLpDRI 288
Cdd:NF033517  151 APVLHADETGVPVL-EPGR--GKTGWLWVYASA----PPAVLFDYAPSRGGEVPEALLEGFNGVLQSDGYAGYNKL-AAV 222
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999 289 TVVGCWAHLRRKFDEALqtlpkDKRKSSDAAKGIAYCDRLFHLEKQFTLLTPEDRLKEREQQSKPVVEAFYAWV--GSLR 366
Cdd:NF033517  223 THAGCWAHLRRKFQEAA-----ERKGKSIAEEALKRIGELYAIERRIRGLSPEERRALRQERSRPLLDELKAWLeaGLAG 297
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999 367 ELPKTLMGKAIHYAQSQRMYLVRYLLDGRLEISNNRAENAIRPFVMGRKNWLFSNTPNGAKASAIYYSLIVSARENGLVP 446
Cdd:NF033517  298 VLPKSPLGKAIRYLLNRWDALLRFLDDGRVPIDNNAAERAIRPVVLGRKNSLFAGSDRGAEAAARIYSLIETAKLNGLNP 377

                  ....*....
gi 2214417999 447 FEYLTKIFT 455
Cdd:NF033517  378 YAYLRDVLT 386
DDE_Tnp_IS66 pfam03050
Transposase IS66 family; Transposase proteins are necessary for efficient DNA transposition. ...
142-428 5.76e-115

Transposase IS66 family; Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.


Pssm-ID: 427113 [Multi-domain]  Cd Length: 281  Bit Score: 339.61  E-value: 5.76e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999 142 GGFASPESVAHIAVQKFVMGSPLYRQEQEWAQSGILLSRQTMSNWLIRACEdWLEPIYQEMKRQLCNHQVLHADETTLQV 221
Cdd:pfam03050   1 KSLAGPSLLALILVLKYADHLPLYRQEDILARLGVELSRGTLANWVGRAAE-LLEPLVDALRAALLESPVIHADETPLRV 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999 222 LhEDGKPAQSKSYMWLYRTSGEAKrQIVLYDYQRDRKHIRPKDFLEDFSGFLHADGYDGYHKL-PDRITVVGCWAHLRRK 300
Cdd:pfam03050  80 L-KPGRGKGKKGWLWVYVTDDRPP-PAVLFHYHPSRGGEHPQALLGGFRGVLQTDGYAGYNKLaRGQVTHAGCWAHARRK 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999 301 FDEALqtlpkdKRKSSDAAKGIAYCDRLFHLEKQFTLLTPEDRLKEREQQSKPVVEAFYAWVGSLRE--LPKTLMGKAIH 378
Cdd:pfam03050 158 FFDAH------KAGSPLAAQALARIGKLYAIEREIRDLTPEERLALRQEYSRPLLDELEAWLEEQLRgvLPKSALGKAIR 231
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 2214417999 379 YAQSQRMYLVRYLLDGRLEISNNRAENAIRPFVMGRKNWLFSNTPNGAKA 428
Cdd:pfam03050 232 YLLNRWEALLRFLEDGRVPIDNNQAERAIRPVVLGRKNWLFAGSDEGAEA 281
COG3436 COG3436
Transposase [Mobilome: prophages, transposons];
1-419 1.57e-95

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442662 [Multi-domain]  Cd Length: 416  Bit Score: 294.63  E-value: 1.57e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999   1 MEQFRLAKRKQFGASSEQTDNEQLCLFNEAEQTADLTVPEPETTEVKAHYRRKTRlttdKLPEDLPVETIEHElPIEARI 80
Cdd:COG3436    14 LERLRLRRLRERESRLESQPELQLLELEEEAEEEEEAAEEAEAKTTKKKPKPGRK----PMPEHLPREEVLHE-PTDMRK 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999  81 CPDcgcpLHKMGEDIREELKIIPAKAVIVRHVRHVYACRHCEESSdrvpIVKAEMPKPVIKGGFASPESVAHIAVQKFVM 160
Cdd:COG3436    89 IDG----LAAIGEEVSEELDLDPGALFVFRNRRDKYKCLYCDGTG----LVYAPAPAKRLEKGLAGPGLLAHILVSKFVD 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999 161 GSPLYRQEQEWAQSGILLSRQTMSNWLIRACEdWLEPIYQEMKRQLCNHQVLHADETTLQVLHEDGKPAQSKSYMWLYRT 240
Cdd:COG3436   161 HLPLYRQEEIFARLGVELSRSTLLNWVGRAAE-LLEPLLEGLDERLLAAPVLHADETPVQVLDEGKGKTVTASYWWVYRD 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999 241 sGEAKRQIVLYDYQRDRKHIRPKDFLEDFSGFLHADGYDGYHKLPDRITVVGCWAHLRRKFDEALQTLPKDKRKSSDAAK 320
Cdd:COG3436   240 -GRPSRGPVVYDAYRSRRGARAGLVLDGGLGGGLGDDYADGYAALLRLAELGCAAAARRRRKAAAAALKKLAKKAAAAAA 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999 321 GIAYCDRLFHLEKQFTLLTPEDRLKEREQQSKPVVEAFYAWvgSLRELPKTLMGKAIHYAQSQRMYLVRYLLDGRLEISN 400
Cdd:COG3436   319 GLAAEEALLRIEELRKEERLRERRRERRPRRLLLLKALLLL--LLLLLPLLPPGKALLYAALARAARLLALLDRLLDLLR 396
                         410
                  ....*....|....*....
gi 2214417999 401 NRAENAIRPFVMGRKNWLF 419
Cdd:COG3436   397 NNDENNAERNALRRRNNLF 415
zf-IS66 pfam13005
zinc-finger binding domain of transposase IS66; This is a zinc-finger region of the N-terminus ...
79-122 5.25e-18

zinc-finger binding domain of transposase IS66; This is a zinc-finger region of the N-terminus of the insertion element IS66 transposase.


Pssm-ID: 463770 [Multi-domain]  Cd Length: 46  Bit Score: 77.35  E-value: 5.25e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2214417999  79 RICPDCGCPLHKMGED-IREELKIIPAKAVIVRHVRHVYACRHCE 122
Cdd:pfam13005   2 RVCPCCGGLLHPIGEDeVREELDIPPAKFRVIEHIRPKYACRHCE 46
LZ_Tnp_IS66 pfam13007
Transposase C of IS166 homeodomain; This is a leucine-zipper-like or homeodomain-like region ...
1-70 4.97e-13

Transposase C of IS166 homeodomain; This is a leucine-zipper-like or homeodomain-like region of transposase TnpC of insertion element IS66.


Pssm-ID: 463771 [Multi-domain]  Cd Length: 67  Bit Score: 63.82  E-value: 4.97e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2214417999   1 MEQFRLAKRKQFGASSEQTDNEQLCLFNEaeqtaDLTVPEPETTEVKAHYRRKTRLTTDKLPEDLPVETI 70
Cdd:pfam13007   3 EEQLALLKRRLFGRSSEKLDPEQLELALE-----ELEAEEAEVEAEARASKKRKKPGRKPLPAHLPREEV 67
DDE_Tnp_IS66_C pfam13817
IS66 C-terminal element;
434-469 4.99e-07

IS66 C-terminal element;


Pssm-ID: 433500  Cd Length: 39  Bit Score: 45.85  E-value: 4.99e-07
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2214417999 434 SLIVSARENGLVPFEYLTKIFTEAPNGADVEN---LMPW 469
Cdd:pfam13817   1 SLIETAKLNGLDPYAYLTDVLERLPDHHPAERldeLLPW 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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