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Conserved domains on  [gi|2210857362|ref|WP_242046446|]
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MULTISPECIES: XRE family transcriptional regulator [Calothrix]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HipB super family cl34252
Transcriptional regulator, contains XRE-family HTH domain [Transcription];
28-105 1.92e-04

Transcriptional regulator, contains XRE-family HTH domain [Transcription];


The actual alignment was detected with superfamily member COG1396:

Pssm-ID: 441006 [Multi-domain]  Cd Length: 83  Bit Score: 36.90  E-value: 1.92e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2210857362  28 GQKMRSLRGDMPLvTLsKKLAEYdVDMSRQYLNRMETftEVKSASPELVTGLCKVFGCTLAELLCLTETKIVQLGVDK 105
Cdd:COG1396     9 GERLRELRKARGL-TQ-EELAER-LGVSRSTISRIER--GRRNPSLETLLKLAKALGVSLDELLGGADEELPEALLSE 81
 
Name Accession Description Interval E-value
HipB COG1396
Transcriptional regulator, contains XRE-family HTH domain [Transcription];
28-105 1.92e-04

Transcriptional regulator, contains XRE-family HTH domain [Transcription];


Pssm-ID: 441006 [Multi-domain]  Cd Length: 83  Bit Score: 36.90  E-value: 1.92e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2210857362  28 GQKMRSLRGDMPLvTLsKKLAEYdVDMSRQYLNRMETftEVKSASPELVTGLCKVFGCTLAELLCLTETKIVQLGVDK 105
Cdd:COG1396     9 GERLRELRKARGL-TQ-EELAER-LGVSRSTISRIER--GRRNPSLETLLKLAKALGVSLDELLGGADEELPEALLSE 81
 
Name Accession Description Interval E-value
HipB COG1396
Transcriptional regulator, contains XRE-family HTH domain [Transcription];
28-105 1.92e-04

Transcriptional regulator, contains XRE-family HTH domain [Transcription];


Pssm-ID: 441006 [Multi-domain]  Cd Length: 83  Bit Score: 36.90  E-value: 1.92e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2210857362  28 GQKMRSLRGDMPLvTLsKKLAEYdVDMSRQYLNRMETftEVKSASPELVTGLCKVFGCTLAELLCLTETKIVQLGVDK 105
Cdd:COG1396     9 GERLRELRKARGL-TQ-EELAER-LGVSRSTISRIER--GRRNPSLETLLKLAKALGVSLDELLGGADEELPEALLSE 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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