|
Name |
Accession |
Description |
Interval |
E-value |
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
1-425 |
0e+00 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 773.04 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 1 MFENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKESAVGHEVNKSLTPGQEFVKIVKG 80
Cdd:COG0541 1 MFENLSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKERALGEEVLKSLTPGQQVIKIVHD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 81 ELIAAMGEVNTELNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLKEKQKKkVLVVSADVYRPAAIKQLETLAEGVGIDFF 160
Cdd:COG0541 81 ELVELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKK-PLLVAADVYRPAAIEQLKTLGEQIGVPVF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 161 PSDVKEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDAMTGQDAANTAKAFNEAL 240
Cdd:COG0541 160 PEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 241 PLTGVVLTKVDGDA*GGAALSIRHITGKPIKFLGVGEKTEALEPFYPDRVASRILGMGDVLSLIEDIESKVDREQAEKLA 320
Cdd:COG0541 240 GLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEAIDEEEAEKLA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 321 NKLKKGDgFDLTDFLEQLKQMRNMGGMANMLSKLPGAGQLPDNVKSQMDDKVLVRMEAIINSMTLKERAKPEIIKGSRKR 400
Cdd:COG0541 320 KKLKKGK-FDLEDFLEQLQQMKKMGPLKKLLGMLPGMGKLKQLKDLDIDEKELKRIEAIINSMTPEERRNPDIINGSRKR 398
|
410 420
....*....|....*....|....*
gi 2207170406 401 RIAMGAGMQVQDVNRLLKQFDEMQR 425
Cdd:COG0541 399 RIAKGSGTTVQDVNRLLKQFEQMKK 423
|
|
| ffh |
TIGR00959 |
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the ... |
2-424 |
0e+00 |
|
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273364 [Multi-domain] Cd Length: 428 Bit Score: 598.50 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 2 FENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKESAVGHEVNKSLTPGQEFVKIVKGE 81
Cdd:TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 82 LIAAMGEVNTELNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAEGVGIDFFP 161
Cdd:TIGR00959 81 LVAILGGENAELNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 162 SDVKEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDAMTGQDAANTAKAFNEALP 241
Cdd:TIGR00959 161 LGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 242 LTGVVLTKVDGDA*GGAALSIRHITGKPIKFLGVGEKTEALEPFYPDRVASRILGMGDVLSLIEDIESKVDREQAEKLAN 321
Cdd:TIGR00959 241 LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 322 KLKKGDgFDLTDFLEQLKQMRNMGGMANMLSKLPGAGQLPDNVK-SQMDDKVLVRMEAIINSMTLKERAKPEIIKGSRKR 400
Cdd:TIGR00959 321 KMKKGQ-FDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSdADLDEKQFKRIEAIISSMTPEERRNPKILNPSRRK 399
|
410 420
....*....|....*....|....
gi 2207170406 401 RIAMGAGMQVQDVNRLLKQFDEMQ 424
Cdd:TIGR00959 400 RIAAGSGTTVQDVNKLIKRFEQMK 423
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
5-425 |
4.48e-156 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 449.27 E-value: 4.48e-156
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 5 LTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKESAVGHEVNKSLTPGQEFVKIVKGELIA 84
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 85 AMGEvNTELNLAAQPPAVVLMAGLQGAGKTTSVGKLgKFLKEKQKKKVLVVSADVYRPAAIKQLETLAEGVGIDFFpSDV 164
Cdd:PRK00771 81 LLGE-ETEPLVLPLKPQTIMLVGLQGSGKTTTAAKL-ARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFY-GDP 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 165 KEK-PIDIVNRALQqaKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDAMTGQDAANTAKAFNEALPLT 243
Cdd:PRK00771 158 DNKdAVEIAKEGLE--KFKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIG 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 244 GVVLTKVDGDA*GGAALSIRHITGKPIKFLGVGEKTEALEPFYPDRVASRILGMGDVLSLIEDIESKVDREQAEKLANKL 323
Cdd:PRK00771 236 GIIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKM 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 324 KKGDgFDLTDFLEQLKQMRNMGGMANMLSKLPGAG-QLPDNVkSQMDDKVLVRMEAIINSMTLKERAKPEIIKGSRKRRI 402
Cdd:PRK00771 316 MKGK-FTLKDMYKQLEAMNKMGPLKQILQMLPGLGgKLPDEA-LEVTEEKLKKYKAIMDSMTEEELENPEIINASRIRRI 393
|
410 420
....*....|....*....|...
gi 2207170406 403 AMGAGMQVQDVNRLLKQFDEMQR 425
Cdd:PRK00771 394 ARGSGTTVEDVRELLKYYKMMKK 416
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
101-294 |
1.74e-106 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 313.77 E-value: 1.74e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 101 AVVLMAGLQGAGKTTSVGKLGKFLKEKQKKkVLVVSADVYRPAAIKQLETLAEGVGIDFFPSDVKEKPIDIVNRALQQAK 180
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKKKGKK-VLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 181 LKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDA*GGAAL 260
Cdd:cd18539 80 EEGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAAL 159
|
170 180 190
....*....|....*....|....*....|....
gi 2207170406 261 SIRHITGKPIKFLGVGEKTEALEPFYPDRVASRI 294
Cdd:cd18539 160 SIRHVTGKPIKFIGVGEKIEDLEPFHPDRMASRI 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
100-296 |
1.71e-99 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 295.86 E-value: 1.71e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 100 PAVVLMAGLQGAGKTTSVGKLGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAEGVGIDFFPSDVKEKPIDIVNRALQQA 179
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 180 KLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDA*GGAA 259
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAA 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 2207170406 260 LSIRHITGKPIKFLGVGEKTEALEPFYPDRVASRILG 296
Cdd:smart00962 161 LSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
102-294 |
1.54e-90 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 272.88 E-value: 1.54e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 102 VVLMAGLQGAGKTTSVGKLGKFLKEKQKKkVLVVSADVYRPAAIKQLETLAEGVGIDFFPSDVKEKPIDIVNRALQQAKL 181
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLKKKGKK-VLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 182 KFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDA*GGAALS 261
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 2207170406 262 IRHITGKPIKFLGVGEKTEALEPFYPDRVASRI 294
Cdd:pfam00448 161 IVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
1-425 |
0e+00 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 773.04 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 1 MFENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKESAVGHEVNKSLTPGQEFVKIVKG 80
Cdd:COG0541 1 MFENLSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKERALGEEVLKSLTPGQQVIKIVHD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 81 ELIAAMGEVNTELNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLKEKQKKkVLVVSADVYRPAAIKQLETLAEGVGIDFF 160
Cdd:COG0541 81 ELVELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKK-PLLVAADVYRPAAIEQLKTLGEQIGVPVF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 161 PSDVKEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDAMTGQDAANTAKAFNEAL 240
Cdd:COG0541 160 PEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 241 PLTGVVLTKVDGDA*GGAALSIRHITGKPIKFLGVGEKTEALEPFYPDRVASRILGMGDVLSLIEDIESKVDREQAEKLA 320
Cdd:COG0541 240 GLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEAIDEEEAEKLA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 321 NKLKKGDgFDLTDFLEQLKQMRNMGGMANMLSKLPGAGQLPDNVKSQMDDKVLVRMEAIINSMTLKERAKPEIIKGSRKR 400
Cdd:COG0541 320 KKLKKGK-FDLEDFLEQLQQMKKMGPLKKLLGMLPGMGKLKQLKDLDIDEKELKRIEAIINSMTPEERRNPDIINGSRKR 398
|
410 420
....*....|....*....|....*
gi 2207170406 401 RIAMGAGMQVQDVNRLLKQFDEMQR 425
Cdd:COG0541 399 RIAKGSGTTVQDVNRLLKQFEQMKK 423
|
|
| ffh |
TIGR00959 |
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the ... |
2-424 |
0e+00 |
|
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273364 [Multi-domain] Cd Length: 428 Bit Score: 598.50 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 2 FENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKESAVGHEVNKSLTPGQEFVKIVKGE 81
Cdd:TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 82 LIAAMGEVNTELNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAEGVGIDFFP 161
Cdd:TIGR00959 81 LVAILGGENAELNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 162 SDVKEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDAMTGQDAANTAKAFNEALP 241
Cdd:TIGR00959 161 LGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 242 LTGVVLTKVDGDA*GGAALSIRHITGKPIKFLGVGEKTEALEPFYPDRVASRILGMGDVLSLIEDIESKVDREQAEKLAN 321
Cdd:TIGR00959 241 LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 322 KLKKGDgFDLTDFLEQLKQMRNMGGMANMLSKLPGAGQLPDNVK-SQMDDKVLVRMEAIINSMTLKERAKPEIIKGSRKR 400
Cdd:TIGR00959 321 KMKKGQ-FDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSdADLDEKQFKRIEAIISSMTPEERRNPKILNPSRRK 399
|
410 420
....*....|....*....|....
gi 2207170406 401 RIAMGAGMQVQDVNRLLKQFDEMQ 424
Cdd:TIGR00959 400 RIAAGSGTTVQDVNKLIKRFEQMK 423
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
5-425 |
4.48e-156 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 449.27 E-value: 4.48e-156
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 5 LTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKESAVGHEVNKSLTPGQEFVKIVKGELIA 84
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 85 AMGEvNTELNLAAQPPAVVLMAGLQGAGKTTSVGKLgKFLKEKQKKKVLVVSADVYRPAAIKQLETLAEGVGIDFFpSDV 164
Cdd:PRK00771 81 LLGE-ETEPLVLPLKPQTIMLVGLQGSGKTTTAAKL-ARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFY-GDP 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 165 KEK-PIDIVNRALQqaKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDAMTGQDAANTAKAFNEALPLT 243
Cdd:PRK00771 158 DNKdAVEIAKEGLE--KFKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIG 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 244 GVVLTKVDGDA*GGAALSIRHITGKPIKFLGVGEKTEALEPFYPDRVASRILGMGDVLSLIEDIESKVDREQAEKLANKL 323
Cdd:PRK00771 236 GIIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKM 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 324 KKGDgFDLTDFLEQLKQMRNMGGMANMLSKLPGAG-QLPDNVkSQMDDKVLVRMEAIINSMTLKERAKPEIIKGSRKRRI 402
Cdd:PRK00771 316 MKGK-FTLKDMYKQLEAMNKMGPLKQILQMLPGLGgKLPDEA-LEVTEEKLKKYKAIMDSMTEEELENPEIINASRIRRI 393
|
410 420
....*....|....*....|...
gi 2207170406 403 AMGAGMQVQDVNRLLKQFDEMQR 425
Cdd:PRK00771 394 ARGSGTTVEDVRELLKYYKMMKK 416
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
101-294 |
1.74e-106 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 313.77 E-value: 1.74e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 101 AVVLMAGLQGAGKTTSVGKLGKFLKEKQKKkVLVVSADVYRPAAIKQLETLAEGVGIDFFPSDVKEKPIDIVNRALQQAK 180
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKKKGKK-VLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 181 LKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDA*GGAAL 260
Cdd:cd18539 80 EEGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAAL 159
|
170 180 190
....*....|....*....|....*....|....
gi 2207170406 261 SIRHITGKPIKFLGVGEKTEALEPFYPDRVASRI 294
Cdd:cd18539 160 SIRHVTGKPIKFIGVGEKIEDLEPFHPDRMASRI 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
100-296 |
1.71e-99 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 295.86 E-value: 1.71e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 100 PAVVLMAGLQGAGKTTSVGKLGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAEGVGIDFFPSDVKEKPIDIVNRALQQA 179
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 180 KLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDA*GGAA 259
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAA 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 2207170406 260 LSIRHITGKPIKFLGVGEKTEALEPFYPDRVASRILG 296
Cdd:smart00962 161 LSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
102-294 |
1.54e-90 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 272.88 E-value: 1.54e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 102 VVLMAGLQGAGKTTSVGKLGKFLKEKQKKkVLVVSADVYRPAAIKQLETLAEGVGIDFFPSDVKEKPIDIVNRALQQAKL 181
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLKKKGKK-VLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 182 KFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDA*GGAALS 261
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 2207170406 262 IRHITGKPIKFLGVGEKTEALEPFYPDRVASRI 294
Cdd:pfam00448 161 IVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
101-294 |
1.88e-89 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 270.40 E-value: 1.88e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 101 AVVLMAGLQGAGKTTSVGKLGKFLKEKQKKkVLVVSADVYRPAAIKQLETLAEGVGIDFFPSDVKEKPIDIVNRALQQAK 180
Cdd:cd03115 1 NVILLVGLQGSGKTTTLAKLARYYQEKGKK-VLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 181 LKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDA*GGAAL 260
Cdd:cd03115 80 LEGYDVLLVDTAGRLQKDEPLMEELKKVKEVESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKGGAAL 159
|
170 180 190
....*....|....*....|....*....|....
gi 2207170406 261 SIRHITGKPIKFLGVGEKTEALEPFYPDRVASRI 294
Cdd:cd03115 160 SIVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
1-296 |
5.44e-79 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 247.24 E-value: 5.44e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 1 MFENLTDRLSRTLRNI--------SGRGRLTEEnikeTLREVRMALLEADVALPVVRDFINRVKESAVGhevnKSLTPGQ 72
Cdd:COG0552 1 FFERLKEGLSKTRSGLgeklkslfSGKKKIDED----LLEELEELLIEADVGVETTEEIIEELRERVKR----KKLKDPE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 73 EFVKIVKGELIAAMGEVNTELNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLKEKQKKkVLVVSADVYRPAAIKQLETLA 152
Cdd:COG0552 73 ELKEALKEELLEILDPVDKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKS-VLLAAGDTFRAAAIEQLEVWG 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 153 EGVGIDFFPSDVKEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK------PVETLFVVDAMTG 226
Cdd:COG0552 152 ERVGVPVIAQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKkldpdaPHEVLLVLDATTG 231
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 227 QDAANTAKAFNEALPLTGVVLTKVDGDA*GGAALSIRHITGKPIKFLGVGEKTEALEPFYPDRVASRILG 296
Cdd:COG0552 232 QNALSQAKVFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
4-425 |
1.44e-74 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 240.12 E-value: 1.44e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 4 NLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKESAVGHEVNKSLTPGQEFVKIVKGELI 83
Cdd:TIGR01425 4 QLGSSLVTALRSMSSATVIDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFEELC 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 84 AAMGEVNTELNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLKEKQKKkVLVVSADVYRPAAIKQLETLAEGVGIDFFPSD 163
Cdd:TIGR01425 84 NLVDPGVEAFTPKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFK-PALVCADTFRAGAFDQLKQNATKAGIPFYGSY 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 164 VKEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDAMTGQDAANTAKAFNEALPLT 243
Cdd:TIGR01425 163 EESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQAAFGQAKAFKDSVEVG 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 244 GVVLTKVDGDA*GGAALSIRHITGKPIKFLGVGEKTEALEPFYPDRVASRILGMGDVLSLIEDIESKVDREQAEKLANKL 323
Cdd:TIGR01425 243 SVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLGMGDLKGLIDKVQDLALNDEEKTLIEHL 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 324 KKGDgFDLTDFLEQLKQMRNMGGMANMLSKLPGAG-QLPDNVKSQMDDKVLVRMEAIINSMTLKE---RAKPEIIKGSRK 399
Cdd:TIGR01425 323 KEGT-FTLRDWYEQFQNLLKMGPLGNIMSMIPGLShPMMSKGNEEETSAKIKVFMTIMDSMTDREldsTAKTMLKDPSRI 401
|
410 420
....*....|....*....|....*.
gi 2207170406 400 RRIAMGAGMQVQDVNRLLKQFDEMQR 425
Cdd:TIGR01425 402 RRVARGSGRDIREVNELLEQYKLFAQ 427
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
1-296 |
2.04e-68 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 220.36 E-value: 2.04e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 1 MFENLTDRLSRTLRNISGR--GRLTEENIKE-TLREVRMALLEADVALPVVRDFINRVKESAVGhevnKSLTPGQEFVKI 77
Cdd:PRK10416 16 WFERLKKGLSKTRENFGEGinGLFAKKKIDEdLLEELEELLIEADVGVETTEEIIEELRERVKR----KNLKDPEELKEL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 78 VKGELIAAMGEVNTELNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLKEKQKKkVLVVSADVYRPAAIKQLETLAEGVGI 157
Cdd:PRK10416 92 LKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKK-VLLAAGDTFRAAAIEQLQVWGERVGV 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 158 DFF----PSDvkekPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK------PVETLFVVDAMTGQ 227
Cdd:PRK10416 171 PVIaqkeGAD----PASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKkadpdaPHEVLLVLDATTGQ 246
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2207170406 228 DAANTAKAFNEALPLTGVVLTKVDGDA*GGAALSIRHITGKPIKFLGVGEKTEALEPFYPDRVASRILG 296
Cdd:PRK10416 247 NALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
27-295 |
6.56e-66 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 212.89 E-value: 6.56e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 27 IKETLREVRMALLEADVALPVVRDFINRVKESAVGhevnKSLTPGQEFVKIVKGELIAAMGEVNT-----ELNLAAQPPA 101
Cdd:TIGR00064 3 DEDFFEELEEILLESDVGYEVVEKIIEALKKELKG----KKVKDAEKLKEILKEYLKEILKEDLLkntdlELIVEENKPN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 102 VVLMAGLQGAGKTTSVGKLgKFLKEKQKKKVLVVSADVYRPAAIKQLETLAEGVGIDFFPSDVKEKPIDIVNRALQQAKL 181
Cdd:TIGR00064 79 VILFVGVNGVGKTTTIAKL-ANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 182 KFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDA* 255
Cdd:TIGR00064 158 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKkvdkdaPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAK 237
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 2207170406 256 GGAALSIRHITGKPIKFLGVGEKTEALEPFYPDRVASRIL 295
Cdd:TIGR00064 238 GGIILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
21-296 |
7.36e-66 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 214.45 E-value: 7.36e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 21 RLTEENIKETLREVRMALLEADVALPVVRDFINRVKESAVGhevnKSLTPGQEFVKIVKGELIAAMGEVNT--------E 92
Cdd:PRK14974 57 EIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVG----KKVKRGEDVEEIVKNALKEALLEVLSvgdlfdliE 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 93 LNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLKEKQKKKVLVvSADVYRPAAIKQLETLAEGVGIDFFPSDVKEKPIDIV 172
Cdd:PRK14974 133 EIKSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIA-AGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVA 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 173 NRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDG 252
Cdd:PRK14974 212 YDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDA 291
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 2207170406 253 DA*GGAALSIRHITGKPIKFLGVGEKTEALEPFYPDRVASRILG 296
Cdd:PRK14974 292 DAKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
102-294 |
2.38e-59 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 192.79 E-value: 2.38e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 102 VVLMAGLQGAGKTTSVGKLGKFLKEKQKKkVLVVSADVYRPAAIKQLETLAEGVGIDFFPSDVKEKPIDIVNRALQQAKL 181
Cdd:cd17875 2 VIMFVGLQGSGKTTTAAKLAYYYQKKGYK-VGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 182 KFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDA*GGAALS 261
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGGALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 2207170406 262 IRHITGKPIKFLGVGEKTEALEPFYPDRVASRI 294
Cdd:cd17875 161 AVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
101-288 |
2.42e-58 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 190.47 E-value: 2.42e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 101 AVVLMAGLQGAGKTTSVGKLGKFLKEKQKKkVLVVSADVYRPAAIKQLETLAEGVGIDFFPSDVKEKPIDIVNRALQQAK 180
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKK-VVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 181 LKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK------PVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDA 254
Cdd:cd17874 80 ARGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKkkdpeaPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTA 159
|
170 180 190
....*....|....*....|....*....|....
gi 2207170406 255 *GGAALSIRHITGKPIKFLGVGEKTEALEPFYPD 288
Cdd:cd17874 160 KGGIVLSIADELKIPVKFVGVGEGIDDLRPFDPE 193
|
|
| SRP_SPB |
pfam02978 |
Signal peptide binding domain; |
329-425 |
2.10e-45 |
|
Signal peptide binding domain;
Pssm-ID: 460771 [Multi-domain] Cd Length: 95 Bit Score: 152.94 E-value: 2.10e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 329 FDLTDFLEQLKQMRNMGGMANMLSKLPGAGQLPDNVKSqmdDKVLVRMEAIINSMTLKERAKPEIIKGSRKRRIAMGAGM 408
Cdd:pfam02978 2 FTLRDFLEQLQQIKKMGPLSKILSMIPGMGKKDDDIDS---EKKLKRIEAIIDSMTPKERDNPDIINASRKRRIARGSGT 78
|
90
....*....|....*..
gi 2207170406 409 QVQDVNRLLKQFDEMQR 425
Cdd:pfam02978 79 SVQEVNRLLKQFKQMKK 95
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
3-296 |
2.05e-32 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 126.13 E-value: 2.05e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 3 ENLTDRLSRTLRNISGRGRLTEENIKETLREvrmaLLEADVALPVVRDFINRVKESAvghevnksltPGQEFVKIVKGEL 82
Cdd:COG1419 84 AELKELLEEQLSGLAGESARLPPELAELLER----LLEAGVSPELARELLEKLPEDL----------SAEEAWRALLEAL 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 83 IAAMGEVNTELNlaaQPPAVVLMAGLQGAGKTTSVGKLGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAEGVGIdffps 162
Cdd:COG1419 150 ARRLPVAEDPLL---DEGGVIALVGPTGVGKTTTIAKLAARFVLRGKKKVALITTDTYRIGAVEQLKTYARILGV----- 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 163 dvkekPIDIVNRA--LQQA--KLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDA-MTGQDAANTAKAFN 237
Cdd:COG1419 222 -----PVEVAYDPeeLKEAleRLRDKDLVLIDTAGRSPRDPELIEELKALLDAGPPIEVYLVLSAtTKYEDLKEIVEAFS 296
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 238 EaLPLTGVVLTKVDGDA*GGAALSIRHITGKPIKFLGVGEK-TEALEPFYPDRVASRILG 296
Cdd:COG1419 297 S-LGLDGLILTKLDETASLGSILNLLIRTGLPLSYITNGQRvPEDIEVADPERLARLLLG 355
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
102-292 |
5.23e-30 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 115.40 E-value: 5.23e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 102 VVLMAGLQGAGKTTSVGKLGKFLKEKQKKkVLVVSADVYRPAAIKQLETLAEGVGIDFFPSDVKEKPIDIVNRALQQAKL 181
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLSNGFR-VLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 182 KFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDAMTGQDAANTAKAFNEAL----------PLTGVVLTKVD 251
Cdd:cd17876 81 QGFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFNQALadyspsdnprLIDGIVLTKFD 160
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2207170406 252 G-DA*GGAALSIRHITGKPIKFLGVGEKTEALEPFYPDRVAS 292
Cdd:cd17876 161 TiDDKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVN 202
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
102-294 |
5.62e-27 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 106.86 E-value: 5.62e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 102 VVLMAGLQGAGKTTSVGKLGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAEGVGIdffPSDVKEKPidivnRALQQA-- 179
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVLKKGKKVALITTDTYRIGAVEQLKTYAEIMGI---PVEVAEDP-----EDLADAle 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 180 KLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDAMT-GQDAANTAKAFnEALPLTGVVLTKVDGDA*GGA 258
Cdd:cd17873 74 RLSDRDLILIDTAGRSPRDKEQLEELKELLGAGEDIEVHLVLSATTkAKDLKEIIERF-SPLGYRGLILTKLDETTSLGS 152
|
170 180 190
....*....|....*....|....*....|....*..
gi 2207170406 259 ALSIRHITGKPIKFLGVGEKT-EALEPFYPDRVASRI 294
Cdd:cd17873 153 VLSVLAESQLPVSYVTTGQRVpEDIEVASPLRLARLL 189
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
5-82 |
6.80e-22 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 89.06 E-value: 6.80e-22
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2207170406 5 LTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKESAVGhevNKSLTPGQEFVKIVKGEL 82
Cdd:pfam02881 1 LGEKLSSLFKGLRGKGKIDEEDLEEALKELEEALLEADVGVEVVKKIIERLREKAVG---EKKLKPPQEVKKILKEEL 75
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
9-86 |
2.33e-20 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 84.91 E-value: 2.33e-20
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2207170406 9 LSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKESAVGhEVNKSLTPGQEFVKIVKGELIAAM 86
Cdd:smart00963 1 LSKALGKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKG-EVLKGLTPKQEVKKILKEELVKIL 77
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
102-296 |
8.41e-16 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 79.17 E-value: 8.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 102 VVLMAGLQGAGKTTSVGKL-GKFLKEKQKKKVLVVSADVYRPAAIKQLETLAEGVGIdffpsdvkekPIDIVN--RALQQ 178
Cdd:PRK05703 223 VVALVGPTGVGKTTTLAKLaARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGI----------PVEVVYdpKELAK 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 179 A--KLKFYDVLIVDTAGRLHVDEAMMDEIKQ-VHAAIKPVETlFVVDAMTGQ--DAANTAKAFNEaLPLTGVVLTKVDGD 253
Cdd:PRK05703 293 AleQLRDCDVILIDTAGRSQRDKRLIEELKAlIEFSGEPIDV-YLVLSATTKyeDLKDIYKHFSR-LPLDGLIFTKLDET 370
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2207170406 254 A*GGAALSIRHITGKPIKFLGVG-EKTEALEPFYPDRVASRILG 296
Cdd:PRK05703 371 SSLGSILSLLIESGLPISYLTNGqRVPDDIKVANPEELVRLLLG 414
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
102-277 |
3.92e-13 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 70.76 E-value: 3.92e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 102 VVLMAGLQGAGKTTSVGKLGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAEGVGIDFFPSDVKEKPIDIVNRALQQakl 181
Cdd:PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE--- 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 182 kfydVLIVDTAGRLHVDEAMMDEIKQVHAAI---KPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDA*GGA 258
Cdd:PRK12724 302 ----LILIDTAGYSHRNLEQLERMQSFYSCFgekDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLGS 377
|
170
....*....|....*....
gi 2207170406 259 ALSIRHITGKPIKFLGVGE 277
Cdd:PRK12724 378 FLELADTYSKSFTYLSVGQ 396
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
102-262 |
5.14e-10 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 61.54 E-value: 5.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 102 VVLMAGLQGAGKTTSVGKLGKF-LKEKQKKKVLVVSADVYRPAAIKQLETLAEGVGIDFFPSDVKEKPIDIVNRalqqak 180
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRfAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER------ 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 181 LKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAiKPVETLFVVDAMTG-QDAANTAKAFNEALPlTGVVLTKVDGDA*GGAA 259
Cdd:PRK12727 426 LRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHfSDLDEVVRRFAHAKP-QGVVLTKLDETGRFGSA 503
|
...
gi 2207170406 260 LSI 262
Cdd:PRK12727 504 LSV 506
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
101-278 |
5.54e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 57.81 E-value: 5.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 101 AVVLMAGLQGAGKTTSVGKLGKF-LKEKQKKKVLVVSADVYRPAAIKQLETLAEGVGIdffPSDVKEKPIDIvnrALQQA 179
Cdd:PRK14722 138 GVFALMGPTGVGKTTTTAKLAARcVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGV---PVHAVKDGGDL---QLALA 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 180 KLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDAMTGQDAAN-TAKAFNE-------ALP-LTGVVLTKV 250
Cdd:PRK14722 212 ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNeVVQAYRSaagqpkaALPdLAGCILTKL 291
|
170 180
....*....|....*....|....*...
gi 2207170406 251 DGDA*GGAALSIRHITGKPIKFLGVGEK 278
Cdd:PRK14722 292 DEASNLGGVLDTVIRYKLPVHYVSTGQK 319
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
102-277 |
2.62e-07 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 52.43 E-value: 2.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 102 VVLMAGLQGAGKTTSVGKLGKFLKEKQKKkVLVVSADVYRPAAIKQLETLAEGVGIDFFpsdVKEKPIDIVNRALQQAKL 181
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRT-VGFITTDTFRSGAVEQFQGYADKLDVELI---VATSPAELEEAVQYMTYV 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 182 KFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDA-MTGQDAANTAKAFNEaLPLTGVVLTKVDGDA*GGAAL 260
Cdd:PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSgMKSADVMTILPKLAE-IPIDGFIITKMDETTRIGDLY 362
|
170
....*....|....*..
gi 2207170406 261 SIRHITGKPIKFLGVGE 277
Cdd:PRK12726 363 TVMQETNLPVLYMTDGQ 379
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
90-277 |
1.61e-05 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 46.98 E-value: 1.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 90 NTElNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLKEKQKKkVLVVSADVYRPAAIKQLETLAEGVGidffpSDVkekpI 169
Cdd:PRK11889 232 NTE-NVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKT-VGFITTDHSRIGTVQQLQDYVKTIG-----FEV----I 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 170 DIVNRALQQAKLKFY------DVLIVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDA-MTGQDAANTAKAFNEaLPL 242
Cdd:PRK11889 301 AVRDEAAMTRALTYFkeearvDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAsMKSKDMIEIITNFKD-IHI 379
|
170 180 190
....*....|....*....|....*....|....*
gi 2207170406 243 TGVVLTKVDGDA*GGAALSIRHITGKPIKFLGVGE 277
Cdd:PRK11889 380 DGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
99-213 |
1.75e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 44.67 E-value: 1.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 99 PPAVVLMAGLQGAGKTTSVGKLGkFLKEKQKKKVLVVSADVYRPAAIKQLEtlaegvGIDFFPSDVKEKPIDIVNRALQQ 178
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALA-RELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALAL 73
|
90 100 110
....*....|....*....|....*....|....*
gi 2207170406 179 AKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIK 213
Cdd:smart00382 74 ARKLKPDVLILDEITSLLDAEQEALLLLLEELRLL 108
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
90-277 |
2.52e-05 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 45.89 E-value: 2.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 90 NTElNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLKEKQKKkVLVVSADVYRPAAIKQLETLAEGVGIDFFPsdVKEKPI 169
Cdd:PRK06731 66 NTE-NVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKT-VGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRDEAA 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 170 diVNRALQQAKLKF-YDVLIVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDA-MTGQDAANTAKAFNEaLPLTGVVL 247
Cdd:PRK06731 142 --MTRALTYFKEEArVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAsMKSKDMIEIITNFKD-IHIDGIVF 218
|
170 180 190
....*....|....*....|....*....|
gi 2207170406 248 TKVDGDA*GGAALSIRHITGKPIKFLGVGE 277
Cdd:PRK06731 219 TKFDETASSGELLKIPAVSSAPIVLMTDGQ 248
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
1-322 |
5.60e-05 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 45.56 E-value: 5.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 1 MFENLTDRLSRTLRNISGRgrlteENIKETLREvrmALLEADVALPVVRDFINRvkesavghevnksLTPGQEFVKI--- 77
Cdd:PRK14723 105 MLERQLAGLLWAAGEVAGR-----DPLRASLFR---WLLGAGFSGQLARALLER-------------LPVGYDRPAAmaw 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 78 VKGELIAAMGEVNTELNLAAQPPAVVLMaGLQGAGKTTSVGKLGKF-LKEKQKKKVLVVSADVYRPAAIKQLETLAEGVG 156
Cdd:PRK14723 164 IRNELATHLPVLRDEDALLAQGGVLALV-GPTGVGKTTTTAKLAARcVAREGADQLALLTTDSFRIGALEQLRIYGRILG 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 157 IdffpsdvkekPIDIVNRA----LQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDAMTGQDAAN- 231
Cdd:PRK14723 243 V----------PVHAVKDAadlrFALAALGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNe 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 232 TAKAF-NEALP-LTGVVLTKVDGDA*GGAAL--SIRHITgkPIKFLGVGEKT-EALEPFYPDRVASRILGMGDVLSLIED 306
Cdd:PRK14723 313 VVHAYrHGAGEdVDGCIITKLDEATHLGPALdtVIRHRL--PVHYVSTGQKVpEHLELAQADELVDRAFATPRRGALFAP 390
|
330
....*....|....*.
gi 2207170406 307 IESkvDREQAEKLANK 322
Cdd:PRK14723 391 SEA--DLAALWAADEA 404
|
|
| CbiA |
pfam01656 |
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ... |
110-275 |
1.69e-04 |
|
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Pssm-ID: 426369 [Multi-domain] Cd Length: 228 Bit Score: 42.72 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 110 GAGKTTSVGKLGkFLKEKQKKKVLVVSADVYRPAA---------IKQLETLAEGV------------------GIDFFPS 162
Cdd:pfam01656 9 GVGKTTLAANLA-RALARRGLRVLLIDLDPQSNNSsveglegdiAPALQALAEGLkgrvnldpillkeksdegGLDLIPG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 163 DVKEKPIDIVN----------RALQQAKlKFYDVLIVDTAGRLHVDeaMMDEIKQVHAAIKPV--ETLFVVDAM-TGQDA 229
Cdd:pfam01656 88 NIDLEKFEKELlgprkeerlrEALEALK-EDYDYVIIDGAPGLGEL--LRNALIAADYVIIPLepEVILVEDAKrLGGVI 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2207170406 230 ANTAKAFNEA-LPLTGVVLTKVDGDA*GGAALSIRHITGKPIKFLGV 275
Cdd:pfam01656 165 AALVGGYALLgLKIIGVVLNKVDGDNHGKLLKEALEELLRGLPVLGV 211
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
102-262 |
8.88e-04 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 41.47 E-value: 8.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 102 VVLMAGLQGAGKTTSVGKLGKFLKEK-QKKKVLVVSADVYRPAAIKQLETLAEGVGIDFfpSDVKekpiDIVNRALQQAK 180
Cdd:PRK14721 193 VYALIGPTGVGKTTTTAKLAARAVIRhGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV--RSIK----DIADLQLMLHE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2207170406 181 LKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDA*GGAAL 260
Cdd:PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAASLGIAL 346
|
..
gi 2207170406 261 SI 262
Cdd:PRK14721 347 DA 348
|
|
| |
