|
Name |
Accession |
Description |
Interval |
E-value |
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
1-419 |
0e+00 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 727.97 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 1 MFESLSDRLSSAFRSLSGRAQLTEENIRDGLREVRLALLEADVNFKVVKEFVERVRERVLGQEVEKSLTPTQQLVKAVHD 80
Cdd:COG0541 1 MFENLSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKERALGEEVLKSLTPGQQVIKIVHD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 81 ELVTLLGGETTELNLRGAQPGVIMMVGLQGSGKTTSAGKLANLLRKQKMRPYLVPVDVYRPAAIDQLRTLARQLDIPCFA 160
Cdd:COG0541 81 ELVELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVFP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 161 SSADMKPVDIVRAALEDAKEKQCTVVILDTAGRLHIDAPLMQELVDIKSAVQPQEILFVADAMTGQDAVTVAEAFNKDLA 240
Cdd:COG0541 161 EEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEALG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 241 LTGVVLTKMDGDARGGAALSIKSVTGASVKYVGVGEKLSDLEVFHPERVAGRILGMGDMLTLIEKAQSSFEAEEAEAMAK 320
Cdd:COG0541 241 LTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEAIDEEEAEKLAK 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 321 KLQKATFDFEDFRTQMRRMKKIGSLENILKLIPGLGGLtSKLGDLKAPEQEMARTEAVINSMTMKERRNPDLINGSRRQR 400
Cdd:COG0541 321 KLKKGKFDLEDFLEQLQQMKKMGPLKKLLGMLPGMGKL-KQLKDLDIDEKELKRIEAIINSMTPEERRNPDIINGSRKRR 399
|
410
....*....|....*....
gi 2192366591 401 IAAGSGTTVAQVNQVLRQF 419
Cdd:COG0541 400 IAKGSGTTVQDVNRLLKQF 418
|
|
| ffh |
TIGR00959 |
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the ... |
2-420 |
0e+00 |
|
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273364 [Multi-domain] Cd Length: 428 Bit Score: 601.20 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 2 FESLSDRLSSAFRSLSGRAQLTEENIRDGLREVRLALLEADVNFKVVKEFVERVRERVLGQEVEKSLTPTQQLVKAVHDE 81
Cdd:TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 82 LVTLLGGETTELNLRGAQPGVIMMVGLQGSGKTTSAGKLANLLRK-QKMRPYLVPVDVYRPAAIDQLRTLARQLDIPCFA 160
Cdd:TIGR00959 81 LVAILGGENAELNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKkQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 161 SSADMKPVDIVRAALEDAKEKQCTVVILDTAGRLHIDAPLMQELVDIKSAVQPQEILFVADAMTGQDAVTVAEAFNKDLA 240
Cdd:TIGR00959 161 LGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 241 LTGVVLTKMDGDARGGAALSIKSVTGASVKYVGVGEKLSDLEVFHPERVAGRILGMGDMLTLIEKAQSSFEAEEAEAMAK 320
Cdd:TIGR00959 241 LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 321 KLQKATFDFEDFRTQMRRMKKIGSLENILKLIPGLGGLTSKLGDLKAPEQEMARTEAVINSMTMKERRNPDLINGSRRQR 400
Cdd:TIGR00959 321 KMKKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSDADLDEKQFKRIEAIISSMTPEERRNPKILNPSRRKR 400
|
410 420
....*....|....*....|
gi 2192366591 401 IAAGSGTTVAQVNQVLRQFT 420
Cdd:TIGR00959 401 IAAGSGTTVQDVNKLIKRFE 420
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
5-419 |
4.25e-162 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 466.99 E-value: 4.25e-162
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 5 LSDRLSSAFRSLSGRAQLTEENIRDGLREVRLALLEADVNFKVVKEFVERVRERVLGQEVEKSLTPTQQLVKAVHDELVT 84
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 85 LLGGETtELNLRGAQPGVIMMVGLQGSGKTTSAGKLANLLRKQKMRPYLVPVDVYRPAAIDQLRTLARQLDIPCFASSAD 164
Cdd:PRK00771 81 LLGEET-EPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDN 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 165 MKPVDIVRAALEDAKEKQctVVILDTAGRLHIDAPLMQELVDIKSAVQPQEILFVADAMTGQDAVTVAEAFNKDLALTGV 244
Cdd:PRK00771 160 KDAVEIAKEGLEKFKKAD--VIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGGI 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 245 VLTKMDGDARGGAALSIKSVTGASVKYVGVGEKLSDLEVFHPERVAGRILGMGDMLTLIEKAQSSFEAEEAEAMAKKLQK 324
Cdd:PRK00771 238 IITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMMK 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 325 ATFDFEDFRTQMRRMKKIGSLENILKLIPGLGGLTSKlGDLKAPEQEMARTEAVINSMTMKERRNPDLINGSRRQRIAAG 404
Cdd:PRK00771 318 GKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGGKLPD-EALEVTEEKLKKYKAIMDSMTEEELENPEIINASRIRRIARG 396
|
410
....*....|....*
gi 2192366591 405 SGTTVAQVNQVLRQF 419
Cdd:PRK00771 397 SGTTVEDVRELLKYY 411
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
102-293 |
1.26e-108 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 321.08 E-value: 1.26e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 102 VIMMVGLQGSGKTTSAGKLANLLRKQKMRPYLVPVDVYRPAAIDQLRTLARQLDIPCFASSADMKPVDIVRAALEDAKEK 181
Cdd:cd18539 2 VILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 182 QCTVVILDTAGRLHIDAPLMQELVDIKSAVQPQEILFVADAMTGQDAVTVAEAFNKDLALTGVVLTKMDGDARGGAALSI 261
Cdd:cd18539 82 GFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAALSI 161
|
170 180 190
....*....|....*....|....*....|..
gi 2192366591 262 KSVTGASVKYVGVGEKLSDLEVFHPERVAGRI 293
Cdd:cd18539 162 RHVTGKPIKFIGVGEKIEDLEPFHPDRMASRI 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
100-295 |
2.36e-100 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 300.09 E-value: 2.36e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 100 PGVIMMVGLQGSGKTTSAGKLANLLRKQ-KMRPYLVPVDVYRPAAIDQLRTLARQLDIPCFASSADMKPVDIVRAALEDA 178
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKgGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 179 KEKQCTVVILDTAGRLHIDAPLMQELVDIKSAVQPQEILFVADAMTGQDAVTVAEAFNKDLALTGVVLTKMDGDARGGAA 258
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAA 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 2192366591 259 LSIKSVTGASVKYVGVGEKLSDLEVFHPERVAGRILG 295
Cdd:smart00962 161 LSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
102-293 |
5.46e-90 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 273.65 E-value: 5.46e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 102 VIMMVGLQGSGKTTSAGKLANLLRKQKMRPYLVPVDVYRPAAIDQLRTLARQLDIPCFASSADMKPVDIVRAALEDAKEK 181
Cdd:pfam00448 2 VILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKAE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 182 QCTVVILDTAGRLHIDAPLMQELVDIKSAVQPQEILFVADAMTGQDAVTVAEAFNKDLALTGVVLTKMDGDARGGAALSI 261
Cdd:pfam00448 82 NYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALSI 161
|
170 180 190
....*....|....*....|....*....|..
gi 2192366591 262 KSVTGASVKYVGVGEKLSDLEVFHPERVAGRI 293
Cdd:pfam00448 162 VAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
5-420 |
9.11e-87 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 273.63 E-value: 9.11e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 5 LSDRLSSAFRSLSGRAQLTEENIRDGLREVRLALLEADVNFKVVKEFVERVRERVLGQEVEKSLTPTQQLVKAVHDELVT 84
Cdd:TIGR01425 5 LGSSLVTALRSMSSATVIDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFEELCN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 85 LLGGETTELNLRGAQPGVIMMVGLQGSGKTTSAGKLANLLRKQKMRPYLVPVDVYRPAAIDQLRTLARQLDIPCFASSAD 164
Cdd:TIGR01425 85 LVDPGVEAFTPKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYGSYEE 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 165 MKPVDIVRAALEDAKEKQCTVVILDTAGRLHIDAPLMQELVDIKSAVQPQEILFVADAMTGQDAVTVAEAFNKDLALTGV 244
Cdd:TIGR01425 165 SDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQAAFGQAKAFKDSVEVGSV 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 245 VLTKMDGDARGGAALSIKSVTGASVKYVGVGEKLSDLEVFHPERVAGRILGMGDMLTLIEKAQSSFEAEEAEAMAKKLQK 324
Cdd:TIGR01425 245 IITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLGMGDLKGLIDKVQDLALNDEEKTLIEHLKE 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 325 ATFDFEDFRTQMRRMKKIGSLENILKLIPGLGGLTSKLGDLKAPEQEMARTEAVINSMTMKERRNPDLI---NGSRRQRI 401
Cdd:TIGR01425 325 GTFTLRDWYEQFQNLLKMGPLGNIMSMIPGLSHPMMSKGNEEETSAKIKVFMTIMDSMTDRELDSTAKTmlkDPSRIRRV 404
|
410
....*....|....*....
gi 2192366591 402 AAGSGTTVAQVNQVLRQFT 420
Cdd:TIGR01425 405 ARGSGRDIREVNELLEQYK 423
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
3-295 |
5.38e-79 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 249.17 E-value: 5.38e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 3 ESLSDRLSSAFrslSGRAQLTEENirdgLREVRLALLEADVNFKVVKEFVERVRERVlgqeVEKSLTPTQQLVKAVHDEL 82
Cdd:COG0552 14 SGLGEKLKSLF---SGKKKIDEDL----LEELEELLIEADVGVETTEEIIEELRERV----KRKKLKDPEELKEALKEEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 83 VTLLGGETTELNLRGAQPGVIMMVGLQGSGKTTSAGKLANLLRKQKMRPYLVPVDVYRPAAIDQLRTLARQLDIPCFASS 162
Cdd:COG0552 83 LEILDPVDKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPVIAQK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 163 --ADmkPVDIVRAALEDAKEKQCTVVILDTAGRLHIDAPLMQELVDIKSAVQ------PQEILFVADAMTGQDAVTVAEA 234
Cdd:COG0552 163 egAD--PAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKkldpdaPHEVLLVLDATTGQNALSQAKV 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2192366591 235 FNKDLALTGVVLTKMDGDARGGAALSIKSVTGASVKYVGVGEKLSDLEVFHPERVAGRILG 295
Cdd:COG0552 241 FNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
102-293 |
1.06e-74 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 234.19 E-value: 1.06e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 102 VIMMVGLQGSGKTTSAGKLANLLRKQKMRPYLVPVDVYRPAAIDQLRTLARQLDIPCFASSADMKPVDIVRAALEDAKEK 181
Cdd:cd03115 2 VILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 182 QCTVVILDTAGRLHIDAPLMQELVDIKSAVQPQEILFVADAMTGQDAVTVAEAFNKDLALTGVVLTKMDGDARGGAALSI 261
Cdd:cd03115 82 GYDVLLVDTAGRLQKDEPLMEELKKVKEVESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKGGAALSI 161
|
170 180 190
....*....|....*....|....*....|..
gi 2192366591 262 KSVTGASVKYVGVGEKLSDLEVFHPERVAGRI 293
Cdd:cd03115 162 VAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
6-295 |
1.93e-68 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 222.28 E-value: 1.93e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 6 SDRLSSAFRSLSGRAQLTEENIrDGLREvrlALLEADVNFKVVKEFVERVRERVlgqeVEKSLTPTQQLVKAVHDELVTL 85
Cdd:PRK10416 28 RENFGEGINGLFAKKKIDEDLL-EELEE---LLIEADVGVETTEEIIEELRERV----KRKNLKDPEELKELLKEELAEI 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 86 LGGETTELNLRGAQPGVIMMVGLQGSGKTTSAGKLANLLRKQKMRPYLVPVDVYRPAAIDQLRTLARQLDIPCFASS--A 163
Cdd:PRK10416 100 LEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKegA 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 164 DmkPVDIVRAALEDAKEKQCTVVILDTAGRLHIDAPLMQELVDIKSAVQ------PQEILFVADAMTGQDAVTVAEAFNK 237
Cdd:PRK10416 180 D--PASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKkadpdaPHEVLLVLDATTGQNALSQAKAFHE 257
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 2192366591 238 DLALTGVVLTKMDGDARGGAALSIKSVTGASVKYVGVGEKLSDLEVFHPERVAGRILG 295
Cdd:PRK10416 258 AVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
22-295 |
4.68e-67 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 219.46 E-value: 4.68e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 22 LTEENIRDGLREVRLALLEADVNFKVVKEFVERVRERVLGQEVEKSLTPTQQLVKAVHDELVTLLG-GETTEL---NLRG 97
Cdd:PRK14974 58 IKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSvGDLFDLieeIKSK 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 98 AQPGVIMMVGLQGSGKTTSAGKLANLLRKQKMRPYLVPVDVYRPAAIDQLRTLARQLDIPCFASSADMKPVDIVRAALED 177
Cdd:PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEH 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 178 AKEKQCTVVILDTAGRLHIDAPLMQELVDIKSAVQPQEILFVADAMTGQDAVTVAEAFNKDLALTGVVLTKMDGDARGGA 257
Cdd:PRK14974 218 AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGA 297
|
250 260 270
....*....|....*....|....*....|....*...
gi 2192366591 258 ALSIKSVTGASVKYVGVGEKLSDLEVFHPERVAGRILG 295
Cdd:PRK14974 298 ALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
102-293 |
1.21e-65 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 210.51 E-value: 1.21e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 102 VIMMVGLQGSGKTTSAGKLANLLRKQKMRPYLVPVDVYRPAAIDQLRTLARQLDIPCFASSADMKPVDIVRAALEDAKEK 181
Cdd:cd17875 2 VIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKKE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 182 QCTVVILDTAGRLHIDAPLMQELVDIKSAVQPQEILFVADAMTGQDAVTVAEAFNKDLALTGVVLTKMDGDARGGAALSI 261
Cdd:cd17875 82 KFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGGALSA 161
|
170 180 190
....*....|....*....|....*....|..
gi 2192366591 262 KSVTGASVKYVGVGEKLSDLEVFHPERVAGRI 293
Cdd:cd17875 162 VAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
29-288 |
6.69e-64 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 209.03 E-value: 6.69e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 29 DGLREVRLALLEADVNFKVVKEFVERVRERVLGQEVEKSLTPTQQLVKAVHDELVTLLGGETT-ELNLRGAQPGVIMMVG 107
Cdd:TIGR00064 5 DFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNTDlELIVEENKPNVILFVG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 108 LQGSGKTTSAGKLANLLRKQKMRPYLVPVDVYRPAAIDQLRTLARQLDIPCFASSADMKPVDIVRAALEDAKEKQCTVVI 187
Cdd:TIGR00064 85 VNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 188 LDTAGRLHIDAPLMQELVDIKSAVQ------PQEILFVADAMTGQDAVTVAEAFNKDLALTGVVLTKMDGDARGGAALSI 261
Cdd:TIGR00064 165 IDTAGRLQNKVNLMDELKKIKRVIKkvdkdaPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGIILSI 244
|
250 260
....*....|....*....|....*..
gi 2192366591 262 KSVTGASVKYVGVGEKLSDLEVFHPER 288
Cdd:TIGR00064 245 AYELKLPIKFIGVGEKIDDLAPFDADW 271
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
102-287 |
5.20e-59 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 193.56 E-value: 5.20e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 102 VIMMVGLQGSGKTTSAGKLANLLRKQKMRPYLVPVDVYRPAAIDQLRTLARQLDIPCFASSADMKPVDIVRAALEDAKEK 181
Cdd:cd17874 2 VILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 182 QCTVVILDTAGRLHIDAPLMQELVDIKSAVQ------PQEILFVADAMTGQDAVTVAEAFNKDLALTGVVLTKMDGDARG 255
Cdd:cd17874 82 GIDVVLIDTAGRLHTKKNLMEELKKIKRVIKkkdpeaPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAKG 161
|
170 180 190
....*....|....*....|....*....|..
gi 2192366591 256 GAALSIKSVTGASVKYVGVGEKLSDLEVFHPE 287
Cdd:cd17874 162 GIVLSIADELKIPVKFVGVGEGIDDLRPFDPE 193
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
102-290 |
3.09e-40 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 144.29 E-value: 3.09e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 102 VIMMVGLQGSGKTTSAGKLANLLRKQKMRPYLVPVDVYRPAAIDQLRTLARQLDIPCFASSADMKPVDIVRAALEDAKEK 181
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARDQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 182 QCTVVILDTAGRLHIDAPLMQELVDIKSAVQPQEILFVADAMTGQDAVTVAEAFNKDLA----------LTGVVLTKMDG 251
Cdd:cd17876 82 GFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFNQALAdyspsdnprlIDGIVLTKFDT 161
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2192366591 252 -DARGGAALSIKSVTGASVKYVGVGEKLSDLEVFHPERVA 290
Cdd:cd17876 162 iDDKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVV 201
|
|
| SRP_SPB |
pfam02978 |
Signal peptide binding domain; |
326-419 |
1.01e-38 |
|
Signal peptide binding domain;
Pssm-ID: 460771 [Multi-domain] Cd Length: 95 Bit Score: 136.37 E-value: 1.01e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 326 TFDFEDFRTQMRRMKKIGSLENILKLIPGLGGLTSKLGDlkapEQEMARTEAVINSMTMKERRNPDLINGSRRQRIAAGS 405
Cdd:pfam02978 1 KFTLRDFLEQLQQIKKMGPLSKILSMIPGMGKKDDDIDS----EKKLKRIEAIIDSMTPKERDNPDIINASRKRRIARGS 76
|
90
....*....|....
gi 2192366591 406 GTTVAQVNQVLRQF 419
Cdd:pfam02978 77 GTSVQEVNRLLKQF 90
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
3-295 |
8.67e-37 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 139.23 E-value: 8.67e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 3 ESLSDRLSSAFRSLSGRAQLTEENirdgLREVRLALLEADVNFKVVKEFVERVRERVlgqeveksltPTQQLVKAVHDEL 82
Cdd:COG1419 84 AELKELLEEQLSGLAGESARLPPE----LAELLERLLEAGVSPELARELLEKLPEDL----------SAEEAWRALLEAL 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 83 VTLLGGETTELnlrGAQPGVIMMVGLQGSGKTTSAGKLA-NLLRKQKMRPYLVPVDVYRPAAIDQLRTLARQLDIPCFA- 160
Cdd:COG1419 150 ARRLPVAEDPL---LDEGGVIALVGPTGVGKTTTIAKLAaRFVLRGKKKVALITTDTYRIGAVEQLKTYARILGVPVEVa 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 161 -SSADMkpvdivRAALEdaKEKQCTVVILDTAGRLHIDAPLMQELVDIKSAVQPQEILFVADA-MTGQDAVTVAEAFnKD 238
Cdd:COG1419 227 yDPEEL------KEALE--RLRDKDLVLIDTAGRSPRDPELIEELKALLDAGPPIEVYLVLSAtTKYEDLKEIVEAF-SS 297
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 2192366591 239 LALTGVVLTKMDGDARGGAALSIKSVTGASVKYVGVGEKL-SDLEVFHPERVAGRILG 295
Cdd:COG1419 298 LGLDGLILTKLDETASLGSILNLLIRTGLPLSYITNGQRVpEDIEVADPERLARLLLG 355
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
101-293 |
1.69e-29 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 114.57 E-value: 1.69e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 101 GVIMMVGLQGSGKTTSAGKLANLLR-KQKMRPYLVPVDVYRPAAIDQLRTLARQLDIPCFA--SSADMKpvdivrAALED 177
Cdd:cd17873 1 RVIALVGPTGVGKTTTLAKLAARYVlKKGKKVALITTDTYRIGAVEQLKTYAEIMGIPVEVaeDPEDLA------DALER 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 178 AKEkqCTVVILDTAGRLHIDAPLMQELVDIKSAVQPQEILFVADAMT-GQDAVTVAEAFnKDLALTGVVLTKMDGDARGG 256
Cdd:cd17873 75 LSD--RDLILIDTAGRSPRDKEQLEELKELLGAGEDIEVHLVLSATTkAKDLKEIIERF-SPLGYRGLILTKLDETTSLG 151
|
170 180 190
....*....|....*....|....*....|....*...
gi 2192366591 257 AALSIKSVTGASVKYVGVGEKL-SDLEVFHPERVAGRI 293
Cdd:cd17873 152 SVLSVLAESQLPVSYVTTGQRVpEDIEVASPLRLARLL 189
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
5-82 |
3.78e-23 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 92.92 E-value: 3.78e-23
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2192366591 5 LSDRLSSAFRSLSGRAQLTEENIRDGLREVRLALLEADVNFKVVKEFVERVRERVLGqevEKSLTPTQQLVKAVHDEL 82
Cdd:pfam02881 1 LGEKLSSLFKGLRGKGKIDEEDLEEALKELEEALLEADVGVEVVKKIIERLREKAVG---EKKLKPPQEVKKILKEEL 75
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
9-86 |
4.38e-21 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 87.22 E-value: 4.38e-21
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2192366591 9 LSSAFRSLSGRAQLTEENIRDGLREVRLALLEADVNFKVVKEFVERVRERVLGqEVEKSLTPTQQLVKAVHDELVTLL 86
Cdd:smart00963 1 LSKALGKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKG-EVLKGLTPKQEVKKILKEELVKIL 77
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
24-295 |
9.61e-19 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 88.41 E-value: 9.61e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 24 EENIRDGLREVRLALLEADVNFKVVKEFVERVRERVLGQEVEksltptqqLVKAVHDELVTLLGGETTELNLRGaqpGVI 103
Cdd:PRK05703 156 VERIPPEFAELYKRLKRSGLSPEIAEKLLKLLLEHMPPRERT--------AWRYLLELLANMIPVRVEDILKQG---GVV 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 104 MMVGLQGSGKTTS----AGKLANLLRKQKMRpyLVPVDVYRPAAIDQLRTLARQLDIpcfassadmkPVDIV--RAALED 177
Cdd:PRK05703 225 ALVGPTGVGKTTTlaklAARYALLYGKKKVA--LITLDTYRIGAVEQLKTYAKIMGI----------PVEVVydPKELAK 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 178 AKE--KQCTVVILDTAGRLHIDAPLMQELVD-IKSAVQPQEILFVAdAMTGQ--DAVTVAEAFnKDLALTGVVLTKMDGD 252
Cdd:PRK05703 293 ALEqlRDCDVILIDTAGRSQRDKRLIEELKAlIEFSGEPIDVYLVL-SATTKyeDLKDIYKHF-SRLPLDGLIFTKLDET 370
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 2192366591 253 ARGGAALSIKSVTGASVKYVGVGEKL-SDLEVFHPERVAGRILG 295
Cdd:PRK05703 371 SSLGSILSLLIESGLPISYLTNGQRVpDDIKVANPEELVRLLLG 414
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
20-192 |
4.04e-16 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 78.53 E-value: 4.04e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 20 AQLTEENIRDGLREVRLALLEADVNFKVVKEFVERVRERvlgqevekslTPTQQLVKAVHDELVTLLGGETTELNLrGAQ 99
Cdd:TIGR03499 125 AGLAWLQRPPERAKLYERLLEAGVSEELARELLEKLPED----------ADAEDAWRWLREALEGMLPVKPEEDPI-LEQ 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 100 PGVIMMVGLQGSGKTTSAGKLAN--LLRKQKMRPYLVPVDVYRPAAIDQLRTLARQLDIpcfassadmkPVDIVR--AAL 175
Cdd:TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAArfALEHGKKKVALITTDTYRIGAVEQLKTYAEILGI----------PVKVARdpKEL 263
|
170
....*....|....*....
gi 2192366591 176 EDAKE--KQCTVVILDTAG 192
Cdd:TIGR03499 264 REALDrlRDKDLILIDTAG 282
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
24-294 |
1.79e-11 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 64.77 E-value: 1.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 24 EENIRDGLREVRLALLEADVNFKVVKEFVERVRERVlgqevEKSLTPTQQLVKAVHDELVTLLGGEttelNLRGAQPGVI 103
Cdd:PRK06731 8 QESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKF-----ENATMITEEVIEYILEDMSSHFNTE----NVFEKEVQTI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 104 MMVGLQGSGKTTSAGKLANLLRKQKMRPYLVPVDVYRPAAIDQLRTLARQLDIPCFASSADMKpvdIVRAALEDAKEKQC 183
Cdd:PRK06731 79 ALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAA---MTRALTYFKEEARV 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 184 TVVILDTAGRLHIDAPLMQELVDIKSAVQPQEI-LFVADAMTGQDAVTVAEAFnKDLALTGVVLTKMDGDARGGAALSIK 262
Cdd:PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYIcLTLSASMKSKDMIEIITNF-KDIHIDGIVFTKFDETASSGELLKIP 234
|
250 260 270
....*....|....*....|....*....|...
gi 2192366591 263 SVTGASVKYVGVGEKL-SDLEVFHPERVAGRIL 294
Cdd:PRK06731 235 AVSSAPIVLMTDGQDVkKNIHIATAEHLAKQML 267
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
1-277 |
2.35e-11 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 66.36 E-value: 2.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 1 MFESLSDRLSSAFRSLSGRaqlteENIRDGLREvrlALLEADVNFKVVKEFVERVRervLGQEVEKSLTptqqlvkAVHD 80
Cdd:PRK14723 105 MLERQLAGLLWAAGEVAGR-----DPLRASLFR---WLLGAGFSGQLARALLERLP---VGYDRPAAMA-------WIRN 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 81 ELVTLLGGETTELNLRgAQPGVIMMVGLQGSGKTTSAGKLAN--LLRKQKMRPYLVPVDVYRPAAIDQLRTLARQLDIPC 158
Cdd:PRK14723 167 ELATHLPVLRDEDALL-AQGGVLALVGPTGVGKTTTTAKLAArcVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 159 FAssadMKPVDIVRAALEDAKEKQctVVILDTAGRLHIDAPLMQELVDIKSAVQPQEILFVADAMTGQDAVT-VAEAFNK 237
Cdd:PRK14723 246 HA----VKDAADLRFALAALGDKH--LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNeVVHAYRH 319
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 2192366591 238 DLA--LTGVVLTKMDGDARGGAALSIKSVTGASVKYVGVGEK 277
Cdd:PRK14723 320 GAGedVDGCIITKLDEATHLGPALDTVIRHRLPVHYVSTGQK 361
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
103-269 |
1.32e-10 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 63.55 E-value: 1.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 103 IMMVGLQGSGKTTSAGKLANLLRKQKMRPYLVPVDVYRPAAIDQLRTLARQLDIPCFASSADMKpvdIVRAALEDAKEKQ 182
Cdd:PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAA---MTRALTYFKEEAR 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 183 CTVVILDTAGRLHIDAPLMQELVDIKSAVQPQEI-LFVADAMTGQDAVTVAEAFnKDLALTGVVLTKMDGDARGGAALSI 261
Cdd:PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYIcLTLSASMKSKDMIEIITNF-KDIHIDGIVFTKFDETASSGELLKI 399
|
....*...
gi 2192366591 262 KSVTGASV 269
Cdd:PRK11889 400 PAVSSAPI 407
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
99-261 |
5.85e-10 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 61.54 E-value: 5.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 99 QPGVIMMVGLQGSGKTTSAGKLANLLRKQKM--RPYLVPVDVYRPAAIDQLRTLARQLDIPCFASSADMKPVDIVRaALE 176
Cdd:PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAprDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLE-RLR 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 177 DAKekqctVVILDTAGRLHIDAPLMQELVDIKSAVQPQEILFVADAMTGQDAVTVAEAFNKdLALTGVVLTKMDGDARGG 256
Cdd:PRK12727 428 DYK-----LVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRFAH-AKPQGVVLTKLDETGRFG 501
|
....*
gi 2192366591 257 AALSI 261
Cdd:PRK12727 502 SALSV 506
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
99-218 |
3.49e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 55.46 E-value: 3.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 99 QPGVIMMVGLQGSGKTTSAGKLANLLRKQKMRPYLVPVDVYRPAAIDQLRTLARQLDIPCFASsadmkpVDIVRAALEDA 178
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSG------ELRLRLALALA 74
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2192366591 179 KEKQCTVVILDTAGRLHIDAPLMQELVDIKSAVQPQEILF 218
Cdd:smart00382 75 RKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSE 114
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
99-278 |
9.45e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 57.67 E-value: 9.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 99 QPGVIMMVGLQGSGKTTSAGKLA---NLLRKQKMRPYlvPVDVYRPAAIDQLRTLARQLDIPcFASSADMKPVDivRAAL 175
Cdd:PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAakyFLHMGKSVSLY--TTDNYRIAAIEQLKRYADTMGMP-FYPVKDIKKFK--ETLA 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 176 EDAKEkqctVVILDTAGRLHIDA---PLMQELVDIKSAVQPQEILFVADAMTGQD-AVTVAEAFnKDLALTGVVLTKMDG 251
Cdd:PRK12724 297 RDGSE----LILIDTAGYSHRNLeqlERMQSFYSCFGEKDSVENLLVLSSTSSYHhTLTVLKAY-ESLNYRRILLTKLDE 371
|
170 180
....*....|....*....|....*..
gi 2192366591 252 DARGGAALSIKSVTGASVKYVGVGEKL 278
Cdd:PRK12724 372 ADFLGSFLELADTYSKSFTYLSVGQEV 398
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
101-280 |
1.09e-08 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 57.04 E-value: 1.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 101 GVIMMVGLQGSGKTTSAGKLAN--LLRKQKMRPYLVPVDVYRPAAIDQLRTLARQLDIPCFAssadMKPVDIVRAALEDA 178
Cdd:PRK14722 138 GVFALMGPTGVGKTTTTAKLAArcVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA----VKDGGDLQLALAEL 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 179 KEKQctVVILDTAGRLHIDAPLMQELVDIKSAVQPQEILFVADAMTGQDAVT-VAEAFNKDLA--------LTGVVLTKM 249
Cdd:PRK14722 214 RNKH--MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNeVVQAYRSAAGqpkaalpdLAGCILTKL 291
|
170 180 190
....*....|....*....|....*....|.
gi 2192366591 250 DGDARGGAALSIKSVTGASVKYVGVGEKLSD 280
Cdd:PRK14722 292 DEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 322
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
93-294 |
2.25e-08 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 56.11 E-value: 2.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 93 LNLRGA-------QPGVIMMVGLQGSGKTTSAGKLAN--LLRKQKMRPYLVPVDVYRPAAIDQLRTLARQLDIpcfaSSA 163
Cdd:PRK14721 177 LNLRTIggdeiieQGGVYALIGPTGVGKTTTTAKLAAraVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGV----SVR 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 164 DMKPVDIVRAALEDAKEKQctVVILDTAGRLHIDAPLMQELVDIKSA-VQPQEILFVADAMTGQDAVTVAEAFNKDlALT 242
Cdd:PRK14721 253 SIKDIADLQLMLHELRGKH--MVLIDTVGMSQRDQMLAEQIAMLSQCgTQVKHLLLLNATSSGDTLDEVISAYQGH-GIH 329
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2192366591 243 GVVLTKMDGDARGGAALSIKSVTGASVKYVGVGEKL-SDLEVFHPERVAGRIL 294
Cdd:PRK14721 330 GCIITKVDEAASLGIALDAVIRRKLVLHYVTNGQKVpEDLHEANSRYLLHRIF 382
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
99-259 |
7.19e-06 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 48.42 E-value: 7.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 99 QPGVIMMVGLQGSGKTTSAGKLAN--LLRKQKMRPYLVPVDVYRPAAIDQLRTLARQLDIPCFA--SSADMkpvdivRAA 174
Cdd:PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAArcVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAvkDAADL------RLA 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 175 LEDAKEKQctVVILDTAGRLHIDaPLMQELVDIKSAVQP--QEILFVADAMTGQDAVTVAEAFnKDLALTGVVLTKMDGD 252
Cdd:PRK06995 329 LSELRNKH--IVLIDTIGMSQRD-RMVSEQIAMLHGAGApvKRLLLLNATSHGDTLNEVVQAY-RGPGLAGCILTKLDEA 404
|
....*..
gi 2192366591 253 ARGGAAL 259
Cdd:PRK06995 405 ASLGGAL 411
|
|
| GPN1 |
cd17870 |
GPN-loop GTPase 1; GPN-loop GTPase 1 (GPN1, also kown as MBD2-interacting protein or MBDin, ... |
102-145 |
4.82e-04 |
|
GPN-loop GTPase 1; GPN-loop GTPase 1 (GPN1, also kown as MBD2-interacting protein or MBDin, RNAPII-associated protein 4, and XPA-binding protein 1) is a GTPase is required for nuclear targeting of RNA polymerase II. It forms heterodimers with GPN3.
Pssm-ID: 349779 [Multi-domain] Cd Length: 241 Bit Score: 41.78 E-value: 4.82e-04
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 2192366591 102 VIMMVGLQGSGKTTSAGKLANLLRKQKMRPYLVPVDvyrPAAID 145
Cdd:cd17870 2 VIIVVGMAGSGKTTFVQRLNAYLHDNKKPPYVINLD---PAVKS 42
|
|
| CysC |
COG0529 |
Adenylylsulfate kinase or related kinase [Inorganic ion transport and metabolism]; ... |
95-140 |
7.87e-04 |
|
Adenylylsulfate kinase or related kinase [Inorganic ion transport and metabolism]; Adenylylsulfate kinase or related kinase is part of the Pathway/BioSystem: Cysteine biosynthesis
Pssm-ID: 440295 [Multi-domain] Cd Length: 189 Bit Score: 40.46 E-value: 7.87e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 2192366591 95 LRGAQPGVIMMVGLQGSGKTTSAGKLANLLRKQKMRPYLVPVDVYR 140
Cdd:COG0529 11 LKGQKGFVVWFTGLSGSGKSTLANALERRLFERGRHVYLLDGDNVR 56
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
96-207 |
1.25e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 38.86 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 96 RGAQPGVIMMVGLQGSGKTTSAGKLANLLRKQKMRpyLVPVDVYRPAAIDQL-RTLARQLDIPCFASsadmKPVDIVRAA 174
Cdd:pfam13401 1 IRFGAGILVLTGESGTGKTTLLRRLLEQLPEVRDS--VVFVDLPSGTSPKDLlRALLRALGLPLSGR----LSKEELLAA 74
|
90 100 110
....*....|....*....|....*....|....*
gi 2192366591 175 LEDA--KEKQCTVVILDTAGRLHIDAplMQELVDI 207
Cdd:pfam13401 75 LQQLllALAVAVVLIIDEAQHLSLEA--LEELRDL 107
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
99-308 |
1.56e-03 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 41.04 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 99 QPGVIMMVGLQGSGKTTSAGKLANLL----RKQKMRPYLVPVDVYRPAAIDQLRTLARQLDIP--CFASSADMKPvdivr 172
Cdd:PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYginsDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPvkAIESFKDLKE----- 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192366591 173 aalEDAKEKQCTVVILDTAGRLHIDAPLMQELVDIKSAVQPQEILFVADAMTGQdAVTVAEAFNK--DLALTGVVLTKMD 250
Cdd:PRK12723 248 ---EITQSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK-TSDVKEIFHQfsPFSYKTVIFTKLD 323
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2192366591 251 GDARGGAALSIKSVTGASVKYVGVGEKL-SDLEVFHPERVAGRILG--MGDMLTLIEKAQS 308
Cdd:PRK12723 324 ETTCVGNLISLIYEMRKEVSYVTDGQIVpHNISIAEPLTFIKKINGyrISDDAEFIRKLKS 384
|
|
| UMPK_like |
cd02028 |
Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the ... |
102-140 |
6.08e-03 |
|
Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Pssm-ID: 238986 [Multi-domain] Cd Length: 179 Bit Score: 37.67 E-value: 6.08e-03
10 20 30
....*....|....*....|....*....|....*....
gi 2192366591 102 VIMMVGLQGSGKTTSAGKLANLLRKQKMRPYLVPVDVYR 140
Cdd:cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39
|
|
| |
