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Conserved domains on  [gi|2181799839|ref|WP_235422812|]
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peptidoglycan-binding protein [Collinsella tanakaei]

Protein Classification

peptidoglycan-binding domain-containing protein( domain architecture ID 11465558)

peptidoglycan-binding domain-containing protein may function as a peptidoglycan hydrolase

CATH:  1.10.101.10
Gene Ontology:  GO:0042834
SCOP:  3001357

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PGRP COG3409
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope ...
 88-146 1.87e-17

Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442635 [Multi-domain]  Cd Length: 69  Bit Score: 74.94  E-value: 1.87e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2181799839  88 HGADVHALQQALNVLGFACGSDDGYFGPHTEAALQQFQENVGLFADGMAFQDTFAYIER 146
Cdd:COG3409    11 SGEDVRELQQRLNALGYYPGPVDGIFGPATEAAVRAFQRANGLPVDGIVGPATWAALRA 69
PGRP COG3409
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope ...
 6-68 9.24e-09

Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442635 [Multi-domain]  Cd Length: 69  Bit Score: 51.06  E-value: 9.24e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2181799839   6 KGMQGPAVEDVQSRLTRLDFSIEPAEleGKlFGDSTAQAVRAFRADNDLMPGDEVDSACWSAL 68
Cdd:COG3409     8 LGDSGEDVRELQQRLNALGYYPGPVD--GI-FGPATEAAVRAFQRANGLPVDGIVGPATWAAL 67
 
Name Accession Description Interval E-value
PGRP COG3409
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope ...
 88-146 1.87e-17

Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442635 [Multi-domain]  Cd Length: 69  Bit Score: 74.94  E-value: 1.87e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2181799839  88 HGADVHALQQALNVLGFACGSDDGYFGPHTEAALQQFQENVGLFADGMAFQDTFAYIER 146
Cdd:COG3409    11 SGEDVRELQQRLNALGYYPGPVDGIFGPATEAAVRAFQRANGLPVDGIVGPATWAALRA 69
PG_binding_1 pfam01471
Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This ...
 88-142 6.20e-12

Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.


Pssm-ID: 460223 [Multi-domain]  Cd Length: 57  Bit Score: 59.45  E-value: 6.20e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2181799839  88 HGADVHALQQALNVLGFACGSDDGYFGPHTEAALQQFQENVGLFADGMAFQDTFA 142
Cdd:pfam01471   1 SGEDVKELQRYLNRLGYYPGPVDGYFGPSTEAAVKAFQRAFGLPVDGIVDPETLA 55
PGRP COG3409
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope ...
 6-68 9.24e-09

Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442635 [Multi-domain]  Cd Length: 69  Bit Score: 51.06  E-value: 9.24e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2181799839   6 KGMQGPAVEDVQSRLTRLDFSIEPAEleGKlFGDSTAQAVRAFRADNDLMPGDEVDSACWSAL 68
Cdd:COG3409     8 LGDSGEDVRELQQRLNALGYYPGPVD--GI-FGPATEAAVRAFQRANGLPVDGIVGPATWAAL 67
PG_binding_1 pfam01471
Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This ...
 9-68 1.48e-04

Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.


Pssm-ID: 460223 [Multi-domain]  Cd Length: 57  Bit Score: 39.04  E-value: 1.48e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2181799839   9 QGPAVEDVQSRLTRLDFSIEPAElegKLFGDSTAQAVRAFRADNDLmPGD-EVDSACWSAL 68
Cdd:pfam01471   1 SGEDVKELQRYLNRLGYYPGPVD---GYFGPSTEAAVKAFQRAFGL-PVDgIVDPETLAAL 57
 
Name Accession Description Interval E-value
PGRP COG3409
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope ...
 88-146 1.87e-17

Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442635 [Multi-domain]  Cd Length: 69  Bit Score: 74.94  E-value: 1.87e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2181799839  88 HGADVHALQQALNVLGFACGSDDGYFGPHTEAALQQFQENVGLFADGMAFQDTFAYIER 146
Cdd:COG3409    11 SGEDVRELQQRLNALGYYPGPVDGIFGPATEAAVRAFQRANGLPVDGIVGPATWAALRA 69
PG_binding_1 pfam01471
Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This ...
 88-142 6.20e-12

Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.


Pssm-ID: 460223 [Multi-domain]  Cd Length: 57  Bit Score: 59.45  E-value: 6.20e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2181799839  88 HGADVHALQQALNVLGFACGSDDGYFGPHTEAALQQFQENVGLFADGMAFQDTFA 142
Cdd:pfam01471   1 SGEDVKELQRYLNRLGYYPGPVDGYFGPSTEAAVKAFQRAFGLPVDGIVDPETLA 55
PGRP COG3409
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope ...
 6-68 9.24e-09

Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442635 [Multi-domain]  Cd Length: 69  Bit Score: 51.06  E-value: 9.24e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2181799839   6 KGMQGPAVEDVQSRLTRLDFSIEPAEleGKlFGDSTAQAVRAFRADNDLMPGDEVDSACWSAL 68
Cdd:COG3409     8 LGDSGEDVRELQQRLNALGYYPGPVD--GI-FGPATEAAVRAFQRANGLPVDGIVGPATWAAL 67
PG_binding_1 pfam01471
Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This ...
 9-68 1.48e-04

Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.


Pssm-ID: 460223 [Multi-domain]  Cd Length: 57  Bit Score: 39.04  E-value: 1.48e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2181799839   9 QGPAVEDVQSRLTRLDFSIEPAElegKLFGDSTAQAVRAFRADNDLmPGD-EVDSACWSAL 68
Cdd:pfam01471   1 SGEDVKELQRYLNRLGYYPGPVD---GYFGPSTEAAVKAFQRAFGL-PVDgIVDPETLAAL 57
YcbB COG2989
Murein L,D-transpeptidase YcbB/YkuD [Cell wall/membrane/envelope biogenesis];
65-149 5.75e-03

Murein L,D-transpeptidase YcbB/YkuD [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442228 [Multi-domain]  Cd Length: 529  Bit Score: 38.00  E-value: 5.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2181799839  65 WSALVDA-SYRLGDRtlylrlpnfhGADVHALQQALNVLGF---ACGSDDGYFGPHTEAALQQFQENVGLFADGMAFQDT 140
Cdd:COG2989   195 WPPVPAGpTLRPGDS----------DPRVPALRERLAALGDlpaDAPSDSDVYDAELVEAVKRFQARHGLKADGVIGPAT 264

                          90       100
                  ....*....|....*....|....
gi 2181799839 141 FAY---------------IERLRH 149
Cdd:COG2989   265 LAAlnvspeerirqlalnLERLRW 288
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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