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Conserved domains on  [gi|2181506979|ref|WP_235303144|]
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DUF3945 domain-containing protein [Phocaeicola barnesiae]

Protein Classification

DUF3945 domain-containing protein( domain architecture ID 10595322)

DUF3945 domain-containing protein with a DUF4099 domain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4099 pfam13351
Protein of unknown function (DUF4099); A family of uncharacterized proteins found by ...
 193-273 8.34e-26

Protein of unknown function (DUF4099); A family of uncharacterized proteins found by clustering human gut metagenomic sequences. The C-terminal repeat region of this family is DUF4098, pfam13345.


:

Pssm-ID: 433137  Cd Length: 80  Bit Score: 101.09  E-value: 8.34e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2181506979 193 NENMINWEELGKFGISKEMLEQSGQLDSMLKGYKTNrTMPLTLNIPGvLTAKLDARLSFISN-GGQVMLGIHGIRKEPEL 271
Cdd:pfam13351   1 DEEDIDWKDLEKLGISKEQLEKSGLLDALLNGYKTP-LVPVSIEFGG-EVISLDARLSLVPGdDGNVVLMIHPIRKEPQL 78


                  ..
gi 2181506979 272 DR 273
Cdd:pfam13351  79 DR 80
DUF3945 pfam13101
Protein of unknown function (DUF3945); A family of uncharacterized proteins found by ...
 309-364 4.13e-20

Protein of unknown function (DUF3945); A family of uncharacterized proteins found by clustering human gut metagenomic sequences. This is a C-terminal repeated region.


:

Pssm-ID: 463786  Cd Length: 59  Bit Score: 84.19  E-value: 4.13e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2181506979 309 PCLISIDKNTNELVAVRQEHVYIPNEIKGVTLTPDEIQKLKNGEQIFVDGMKSNQG 364
Cdd:pfam13101   4 PSFVSIDKLTNELVAMRVEKIKIPDEIKGVKLTEQQKQDLREGKPVLLEGMISRKG 59
DUF3945 pfam13101
Protein of unknown function (DUF3945); A family of uncharacterized proteins found by ...
 425-487 4.58e-18

Protein of unknown function (DUF3945); A family of uncharacterized proteins found by clustering human gut metagenomic sequences. This is a C-terminal repeated region.


:

Pssm-ID: 463786  Cd Length: 59  Bit Score: 78.03  E-value: 4.58e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2181506979 425 ELFSSFVTMDKVTGGLQYTRhnpeTGEIYIPKEICSVQLTPEDKEALRKGQPIYLENMINRKG 487
Cdd:pfam13101   1 EEFPSFVSIDKLTNELVAMR----VEKIKIPDEIKGVKLTEQQKQDLREGKPVLLEGMISRKG 59
DUF3945 pfam13101
Protein of unknown function (DUF3945); A family of uncharacterized proteins found by ...
 488-553 1.08e-16

Protein of unknown function (DUF3945); A family of uncharacterized proteins found by clustering human gut metagenomic sequences. This is a C-terminal repeated region.


:

Pssm-ID: 463786  Cd Length: 59  Bit Score: 74.18  E-value: 1.08e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2181506979 488 EEFSSFVKLDLASGRPQYSRTpdgfnerQAPTIPAEVYGHLLSAQERANLQDGKAILVTGMKGPNG 553
Cdd:pfam13101   1 EEFPSFVSIDKLTNELVAMRV-------EKIKIPDEIKGVKLTEQQKQDLREGKPVLLEGMISRKG 59
 
Name Accession Description Interval E-value
DUF4099 pfam13351
Protein of unknown function (DUF4099); A family of uncharacterized proteins found by ...
 193-273 8.34e-26

Protein of unknown function (DUF4099); A family of uncharacterized proteins found by clustering human gut metagenomic sequences. The C-terminal repeat region of this family is DUF4098, pfam13345.


Pssm-ID: 433137  Cd Length: 80  Bit Score: 101.09  E-value: 8.34e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2181506979 193 NENMINWEELGKFGISKEMLEQSGQLDSMLKGYKTNrTMPLTLNIPGvLTAKLDARLSFISN-GGQVMLGIHGIRKEPEL 271
Cdd:pfam13351   1 DEEDIDWKDLEKLGISKEQLEKSGLLDALLNGYKTP-LVPVSIEFGG-EVISLDARLSLVPGdDGNVVLMIHPIRKEPQL 78


                  ..
gi 2181506979 272 DR 273
Cdd:pfam13351  79 DR 80
DUF3945 pfam13101
Protein of unknown function (DUF3945); A family of uncharacterized proteins found by ...
 309-364 4.13e-20

Protein of unknown function (DUF3945); A family of uncharacterized proteins found by clustering human gut metagenomic sequences. This is a C-terminal repeated region.


Pssm-ID: 463786  Cd Length: 59  Bit Score: 84.19  E-value: 4.13e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2181506979 309 PCLISIDKNTNELVAVRQEHVYIPNEIKGVTLTPDEIQKLKNGEQIFVDGMKSNQG 364
Cdd:pfam13101   4 PSFVSIDKLTNELVAMRVEKIKIPDEIKGVKLTEQQKQDLREGKPVLLEGMISRKG 59
DUF3945 pfam13101
Protein of unknown function (DUF3945); A family of uncharacterized proteins found by ...
 425-487 4.58e-18

Protein of unknown function (DUF3945); A family of uncharacterized proteins found by clustering human gut metagenomic sequences. This is a C-terminal repeated region.


Pssm-ID: 463786  Cd Length: 59  Bit Score: 78.03  E-value: 4.58e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2181506979 425 ELFSSFVTMDKVTGGLQYTRhnpeTGEIYIPKEICSVQLTPEDKEALRKGQPIYLENMINRKG 487
Cdd:pfam13101   1 EEFPSFVSIDKLTNELVAMR----VEKIKIPDEIKGVKLTEQQKQDLREGKPVLLEGMISRKG 59
DUF3945 pfam13101
Protein of unknown function (DUF3945); A family of uncharacterized proteins found by ...
 488-553 1.08e-16

Protein of unknown function (DUF3945); A family of uncharacterized proteins found by clustering human gut metagenomic sequences. This is a C-terminal repeated region.


Pssm-ID: 463786  Cd Length: 59  Bit Score: 74.18  E-value: 1.08e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2181506979 488 EEFSSFVKLDLASGRPQYSRTpdgfnerQAPTIPAEVYGHLLSAQERANLQDGKAILVTGMKGPNG 553
Cdd:pfam13101   1 EEFPSFVSIDKLTNELVAMRV-------EKIKIPDEIKGVKLTEQQKQDLREGKPVLLEGMISRKG 59
 
Name Accession Description Interval E-value
DUF4099 pfam13351
Protein of unknown function (DUF4099); A family of uncharacterized proteins found by ...
 193-273 8.34e-26

Protein of unknown function (DUF4099); A family of uncharacterized proteins found by clustering human gut metagenomic sequences. The C-terminal repeat region of this family is DUF4098, pfam13345.


Pssm-ID: 433137  Cd Length: 80  Bit Score: 101.09  E-value: 8.34e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2181506979 193 NENMINWEELGKFGISKEMLEQSGQLDSMLKGYKTNrTMPLTLNIPGvLTAKLDARLSFISN-GGQVMLGIHGIRKEPEL 271
Cdd:pfam13351   1 DEEDIDWKDLEKLGISKEQLEKSGLLDALLNGYKTP-LVPVSIEFGG-EVISLDARLSLVPGdDGNVVLMIHPIRKEPQL 78


                  ..
gi 2181506979 272 DR 273
Cdd:pfam13351  79 DR 80
DUF3945 pfam13101
Protein of unknown function (DUF3945); A family of uncharacterized proteins found by ...
 309-364 4.13e-20

Protein of unknown function (DUF3945); A family of uncharacterized proteins found by clustering human gut metagenomic sequences. This is a C-terminal repeated region.


Pssm-ID: 463786  Cd Length: 59  Bit Score: 84.19  E-value: 4.13e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2181506979 309 PCLISIDKNTNELVAVRQEHVYIPNEIKGVTLTPDEIQKLKNGEQIFVDGMKSNQG 364
Cdd:pfam13101   4 PSFVSIDKLTNELVAMRVEKIKIPDEIKGVKLTEQQKQDLREGKPVLLEGMISRKG 59
DUF3945 pfam13101
Protein of unknown function (DUF3945); A family of uncharacterized proteins found by ...
 425-487 4.58e-18

Protein of unknown function (DUF3945); A family of uncharacterized proteins found by clustering human gut metagenomic sequences. This is a C-terminal repeated region.


Pssm-ID: 463786  Cd Length: 59  Bit Score: 78.03  E-value: 4.58e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2181506979 425 ELFSSFVTMDKVTGGLQYTRhnpeTGEIYIPKEICSVQLTPEDKEALRKGQPIYLENMINRKG 487
Cdd:pfam13101   1 EEFPSFVSIDKLTNELVAMR----VEKIKIPDEIKGVKLTEQQKQDLREGKPVLLEGMISRKG 59
DUF3945 pfam13101
Protein of unknown function (DUF3945); A family of uncharacterized proteins found by ...
 488-553 1.08e-16

Protein of unknown function (DUF3945); A family of uncharacterized proteins found by clustering human gut metagenomic sequences. This is a C-terminal repeated region.


Pssm-ID: 463786  Cd Length: 59  Bit Score: 74.18  E-value: 1.08e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2181506979 488 EEFSSFVKLDLASGRPQYSRTpdgfnerQAPTIPAEVYGHLLSAQERANLQDGKAILVTGMKGPNG 553
Cdd:pfam13101   1 EEFPSFVSIDKLTNELVAMRV-------EKIKIPDEIKGVKLTEQQKQDLREGKPVLLEGMISRKG 59
Toprim_Crpt pfam13342
C-terminal repeat of topoisomerase;
519-565 8.35e-03

C-terminal repeat of topoisomerase;


Pssm-ID: 463851 [Multi-domain]  Cd Length: 60  Bit Score: 35.15  E-value: 8.35e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2181506979 519 TIPAEVYGHLLSAQE-RANLQDGKAILVTGMKGPNGKPFDSYLKVNAN 565
Cdd:pfam13342   5 SIGKTIAGKKLSEEQvKELLTKGKTGLIKGFKSKKGKKFDAYLVLDDD 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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