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Conserved domains on  [gi|2178850368|ref|WP_234597083|]
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MULTISPECIES: DUF1145 domain-containing protein [Shewanella]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1145 super family cl11481
Protein of unknown function (DUF1145); This family consists of several hypothetical bacterial ...
 5-85 5.01e-14

Protein of unknown function (DUF1145); This family consists of several hypothetical bacterial proteins of unknown function.


The actual alignment was detected with superfamily member COG3776:

Pssm-ID: 472200  Cd Length: 91  Bit Score: 61.47  E-value: 5.01e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178850368   5 LVLGKLATLLAWVLMFFNLFSPFEGNIGVILTILLGVTAMMHGLQVLIFHTIFCQ-LLPLKAKDYLNAFLFGVFALLDYR 83
Cdd:COG3776     3 INLGRLLMLFVWGFLLLNLVHPFPKPLNIFLNVALGFMVLMHGLQLLLLKGTLPKdGPKLSKWDQLRIFLFGVFELLAWQ 82


                  ..
gi 2178850368  84 QR 85
Cdd:COG3776    83 KK 84
 
Name Accession Description Interval E-value
YhhL COG3776
Uncharacterized conserved protein YhhL, DUF1145 family [Function unknown];
5-85 5.01e-14

Uncharacterized conserved protein YhhL, DUF1145 family [Function unknown];


Pssm-ID: 442990  Cd Length: 91  Bit Score: 61.47  E-value: 5.01e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178850368   5 LVLGKLATLLAWVLMFFNLFSPFEGNIGVILTILLGVTAMMHGLQVLIFHTIFCQ-LLPLKAKDYLNAFLFGVFALLDYR 83
Cdd:COG3776     3 INLGRLLMLFVWGFLLLNLVHPFPKPLNIFLNVALGFMVLMHGLQLLLLKGTLPKdGPKLSKWDQLRIFLFGVFELLAWQ 82


                  ..
gi 2178850368  84 QR 85
Cdd:COG3776    83 KK 84
DUF1145 pfam06611
Protein of unknown function (DUF1145); This family consists of several hypothetical bacterial ...
 3-57 1.32e-08

Protein of unknown function (DUF1145); This family consists of several hypothetical bacterial proteins of unknown function.


Pssm-ID: 429030  Cd Length: 58  Bit Score: 46.85  E-value: 1.32e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2178850368   3 AVLVLGKLATLLAWVLMFFNLFSPFEGNIGVILTILLGVTAMMHGLQVLIFHTIF 57
Cdd:pfam06611   1 MLINLGKLLMLGFWGVLLFNLVHPFPGPLNIFLNIAGGFLVLMHGLQLLLFKAAL 55
PRK10910 PRK10910
DUF1145 family protein;
7-85 1.05e-05

DUF1145 family protein;


Pssm-ID: 182831  Cd Length: 89  Bit Score: 40.37  E-value: 1.05e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178850368   7 LGKLATLLAWVLMFFNLFSPFEGNIGVILTILLGVTAMMHGLQ-VLIFHTIFCQLLPLKAKDYLNAFLFGVFALLDYRQR 85
Cdd:PRK10910    5 LGRLLMLCVWGFLILNLVHPFPRPLNIFVNVALIFMVLMHGLQlALLKSTQPKDGPQLSGLEQVRIFLFGVFELLAWQKK 84
 
Name Accession Description Interval E-value
YhhL COG3776
Uncharacterized conserved protein YhhL, DUF1145 family [Function unknown];
5-85 5.01e-14

Uncharacterized conserved protein YhhL, DUF1145 family [Function unknown];


Pssm-ID: 442990  Cd Length: 91  Bit Score: 61.47  E-value: 5.01e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178850368   5 LVLGKLATLLAWVLMFFNLFSPFEGNIGVILTILLGVTAMMHGLQVLIFHTIFCQ-LLPLKAKDYLNAFLFGVFALLDYR 83
Cdd:COG3776     3 INLGRLLMLFVWGFLLLNLVHPFPKPLNIFLNVALGFMVLMHGLQLLLLKGTLPKdGPKLSKWDQLRIFLFGVFELLAWQ 82


                  ..
gi 2178850368  84 QR 85
Cdd:COG3776    83 KK 84
DUF1145 pfam06611
Protein of unknown function (DUF1145); This family consists of several hypothetical bacterial ...
 3-57 1.32e-08

Protein of unknown function (DUF1145); This family consists of several hypothetical bacterial proteins of unknown function.


Pssm-ID: 429030  Cd Length: 58  Bit Score: 46.85  E-value: 1.32e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2178850368   3 AVLVLGKLATLLAWVLMFFNLFSPFEGNIGVILTILLGVTAMMHGLQVLIFHTIF 57
Cdd:pfam06611   1 MLINLGKLLMLGFWGVLLFNLVHPFPGPLNIFLNIAGGFLVLMHGLQLLLFKAAL 55
PRK10910 PRK10910
DUF1145 family protein;
7-85 1.05e-05

DUF1145 family protein;


Pssm-ID: 182831  Cd Length: 89  Bit Score: 40.37  E-value: 1.05e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2178850368   7 LGKLATLLAWVLMFFNLFSPFEGNIGVILTILLGVTAMMHGLQ-VLIFHTIFCQLLPLKAKDYLNAFLFGVFALLDYRQR 85
Cdd:PRK10910    5 LGRLLMLCVWGFLILNLVHPFPRPLNIFVNVALIFMVLMHGLQlALLKSTQPKDGPQLSGLEQVRIFLFGVFELLAWQKK 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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