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Conserved domains on  [gi|2165679068|ref|WP_232041190|]
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MULTISPECIES: ATP-binding protein [Ralstonia]

Protein Classification

COG4315 family protein( domain architecture ID 11468205)

COG4315 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4315 COG4315
Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) [Function unknown];
44-144 1.07e-48

Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) [Function unknown];


:

Pssm-ID: 443456 [Multi-domain]  Cd Length: 108  Bit Score: 151.98  E-value: 1.07e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165679068  44 PSAVKVTNGTLTDQHGMALYTFDRD-AMAGKSACNGKCAENWPPLAANDADKPSG----DYTIITRDDGKKQWAYRGKPL 118
Cdd:COG4315     1 TAASTELGPVLVDADGMTLYTFDKDtAGPGKSACDGACAANWPPLLADGDAKASGldtgDFGTITRADGTKQWTYKGWPL 80

                          90       100
                  ....*....|....*....|....*.
gi 2165679068 119 YLWTKDKMPGDQTGDGFMNVWHIAKP 144
Cdd:COG4315    81 YYYAGDKKPGDTKGDGVGGVWHVVKP 106
 
Name Accession Description Interval E-value
COG4315 COG4315
Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) [Function unknown];
44-144 1.07e-48

Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) [Function unknown];


Pssm-ID: 443456 [Multi-domain]  Cd Length: 108  Bit Score: 151.98  E-value: 1.07e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165679068  44 PSAVKVTNGTLTDQHGMALYTFDRD-AMAGKSACNGKCAENWPPLAANDADKPSG----DYTIITRDDGKKQWAYRGKPL 118
Cdd:COG4315     1 TAASTELGPVLVDADGMTLYTFDKDtAGPGKSACDGACAANWPPLLADGDAKASGldtgDFGTITRADGTKQWTYKGWPL 80

                          90       100
                  ....*....|....*....|....*.
gi 2165679068 119 YLWTKDKMPGDQTGDGFMNVWHIAKP 144
Cdd:COG4315    81 YYYAGDKKPGDTKGDGVGGVWHVVKP 106
SCO0930_lipo NF040526
SCO0930 family lipoprotein; Members of this family are full-length homologs to the lipoprotein ...
 54-144 2.24e-19

SCO0930 family lipoprotein; Members of this family are full-length homologs to the lipoprotein SCO0930, Streptomyces coelicolor A3(2). SCO0930 contains four copies of the repeat described by Pfam model PF03640. By comparison, PA5359 from Pseudomonas aeruginosa PAO1 has only two copies of the repeat, differs substantially in several regions, and is excluded from this family.


Pssm-ID: 468525 [Multi-domain]  Cd Length: 310  Bit Score: 81.66  E-value: 2.24e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165679068  54 LTDQHGMALYTFDRD-AMAGKSACNGKCAENWPPLAANDADK----PSGDYTIITRDDGKKQWAYRGKPLYLWTKDKMPG 128
Cdd:NF040526  208 VVDKNGMTVYRFTKDsAWPMKTACTGACLEKWPPVAPVDKNDtkgiDKKGLMTFTRPDGTKQQTVDCWPVYTFAGDKKPG 287

                          90
                  ....*....|....*.
gi 2165679068 129 DQTGDGFMNVWHIAKP 144
Cdd:NF040526  288 DTNGQGVGGTWYAVEP 303
SCO0930_lipo NF040526
SCO0930 family lipoprotein; Members of this family are full-length homologs to the lipoprotein ...
 54-144 2.09e-18

SCO0930 family lipoprotein; Members of this family are full-length homologs to the lipoprotein SCO0930, Streptomyces coelicolor A3(2). SCO0930 contains four copies of the repeat described by Pfam model PF03640. By comparison, PA5359 from Pseudomonas aeruginosa PAO1 has only two copies of the repeat, differs substantially in several regions, and is excluded from this family.


Pssm-ID: 468525 [Multi-domain]  Cd Length: 310  Bit Score: 79.34  E-value: 2.09e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165679068  54 LTDQHGMALYTFDRD-AMAGKSACNGKCAENWPPLAANDADKPSG-DYTI---ITRDDGKKQWAYRGKPLYLWTKDKMPG 128
Cdd:NF040526   82 LTDSAGLTLYRFDKDtAEPPKSNCDGDCATTWPPVPADDAVAAAGvDKALlgeVTRADGTKQLTVGGWPAYRYAKDTKAG 161

                          90
                  ....*....|....*.
gi 2165679068 129 DQTGDGFMNVWHIAKP 144
Cdd:NF040526  162 DAKGQGVGGTWYALAP 177
Lipoprotein_15 pfam03640
Secreted repeat of unknown function; This family occurs as tandem repeats in a set of ...
 101-142 8.73e-15

Secreted repeat of unknown function; This family occurs as tandem repeats in a set of lipoproteins. The alignment contains a Y-X4-D motif.


Pssm-ID: 427419 [Multi-domain]  Cd Length: 45  Bit Score: 63.80  E-value: 8.73e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2165679068 101 IITRDDGKKQWAYRGKPLYLWTKDKMPGDQTGDGFM---NVWHIA 142
Cdd:pfam03640   1 TVTRDDGTKQVAYKGMPLYTFAKDTKPGDKTGDGVGacaGVWPPV 45
 
Name Accession Description Interval E-value
COG4315 COG4315
Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) [Function unknown];
44-144 1.07e-48

Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) [Function unknown];


Pssm-ID: 443456 [Multi-domain]  Cd Length: 108  Bit Score: 151.98  E-value: 1.07e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165679068  44 PSAVKVTNGTLTDQHGMALYTFDRD-AMAGKSACNGKCAENWPPLAANDADKPSG----DYTIITRDDGKKQWAYRGKPL 118
Cdd:COG4315     1 TAASTELGPVLVDADGMTLYTFDKDtAGPGKSACDGACAANWPPLLADGDAKASGldtgDFGTITRADGTKQWTYKGWPL 80

                          90       100
                  ....*....|....*....|....*.
gi 2165679068 119 YLWTKDKMPGDQTGDGFMNVWHIAKP 144
Cdd:COG4315    81 YYYAGDKKPGDTKGDGVGGVWHVVKP 106
SCO0930_lipo NF040526
SCO0930 family lipoprotein; Members of this family are full-length homologs to the lipoprotein ...
 54-144 2.24e-19

SCO0930 family lipoprotein; Members of this family are full-length homologs to the lipoprotein SCO0930, Streptomyces coelicolor A3(2). SCO0930 contains four copies of the repeat described by Pfam model PF03640. By comparison, PA5359 from Pseudomonas aeruginosa PAO1 has only two copies of the repeat, differs substantially in several regions, and is excluded from this family.


Pssm-ID: 468525 [Multi-domain]  Cd Length: 310  Bit Score: 81.66  E-value: 2.24e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165679068  54 LTDQHGMALYTFDRD-AMAGKSACNGKCAENWPPLAANDADK----PSGDYTIITRDDGKKQWAYRGKPLYLWTKDKMPG 128
Cdd:NF040526  208 VVDKNGMTVYRFTKDsAWPMKTACTGACLEKWPPVAPVDKNDtkgiDKKGLMTFTRPDGTKQQTVDCWPVYTFAGDKKPG 287

                          90
                  ....*....|....*.
gi 2165679068 129 DQTGDGFMNVWHIAKP 144
Cdd:NF040526  288 DTNGQGVGGTWYAVEP 303
SCO0930_lipo NF040526
SCO0930 family lipoprotein; Members of this family are full-length homologs to the lipoprotein ...
 54-144 2.09e-18

SCO0930 family lipoprotein; Members of this family are full-length homologs to the lipoprotein SCO0930, Streptomyces coelicolor A3(2). SCO0930 contains four copies of the repeat described by Pfam model PF03640. By comparison, PA5359 from Pseudomonas aeruginosa PAO1 has only two copies of the repeat, differs substantially in several regions, and is excluded from this family.


Pssm-ID: 468525 [Multi-domain]  Cd Length: 310  Bit Score: 79.34  E-value: 2.09e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2165679068  54 LTDQHGMALYTFDRD-AMAGKSACNGKCAENWPPLAANDADKPSG-DYTI---ITRDDGKKQWAYRGKPLYLWTKDKMPG 128
Cdd:NF040526   82 LTDSAGLTLYRFDKDtAEPPKSNCDGDCATTWPPVPADDAVAAAGvDKALlgeVTRADGTKQLTVGGWPAYRYAKDTKAG 161

                          90
                  ....*....|....*.
gi 2165679068 129 DQTGDGFMNVWHIAKP 144
Cdd:NF040526  162 DAKGQGVGGTWYALAP 177
Lipoprotein_15 pfam03640
Secreted repeat of unknown function; This family occurs as tandem repeats in a set of ...
 101-142 8.73e-15

Secreted repeat of unknown function; This family occurs as tandem repeats in a set of lipoproteins. The alignment contains a Y-X4-D motif.


Pssm-ID: 427419 [Multi-domain]  Cd Length: 45  Bit Score: 63.80  E-value: 8.73e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2165679068 101 IITRDDGKKQWAYRGKPLYLWTKDKMPGDQTGDGFM---NVWHIA 142
Cdd:pfam03640   1 TVTRDDGTKQVAYKGMPLYTFAKDTKPGDKTGDGVGacaGVWPPV 45
Lipoprotein_15 pfam03640
Secreted repeat of unknown function; This family occurs as tandem repeats in a set of ...
 46-87 1.38e-08

Secreted repeat of unknown function; This family occurs as tandem repeats in a set of lipoproteins. The alignment contains a Y-X4-D motif.


Pssm-ID: 427419 [Multi-domain]  Cd Length: 45  Bit Score: 48.01  E-value: 1.38e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2165679068  46 AVKVTNGT-LTDQHGMALYTFDRDAMAG--KSACNGKCAENWPPL 87
Cdd:pfam03640   1 TVTRDDGTkQVAYKGMPLYTFAKDTKPGdkTGDGVGACAGVWPPV 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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