|
Name |
Accession |
Description |
Interval |
E-value |
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
3-219 |
2.52e-57 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 181.38 E-value: 2.52e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTA-PRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD-AVRDVKALRRTVGFVFANPAAQMVMPTVRED 80
Cdd:COG1122 17 LDDVSLSIEKgEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDiTKKNLRELRRKVGLVFQNPDDQLFAPTVEED 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 81 VELTVKSL---RDDAGRRLAKddvaarvaaALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDG 157
Cdd:COG1122 97 VAFGPENLglpREEIRERVEE---------ALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEVLVLDEPTAGLDP 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2158298083 158 RHRRIVADRLLAADPSapdGFQLLLVTHDLELARA-CDEAVWIHGGHVERTGPAEDVVEAYER 219
Cdd:COG1122 168 RGRRELLELLKRLNKE---GKTVIIVTHDLDLVAElADRVIVLDDGRIVADGTPREVFSDYEL 227
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
2-203 |
5.01e-48 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 157.24 E-value: 5.01e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTA-PRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD-AVRDVKALRRTVGFVFANPAAQMVMPTVRE 79
Cdd:cd03225 16 ALDDISLTIKKgEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDlTKLSLKELRRKVGLVFQNPDDQFFGPTVEE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 80 DVELTVKSL---RDDAGRRLAKDdvaarvaaaLEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLD 156
Cdd:cd03225 96 EVAFGLENLglpEEEIEERVEEA---------LELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLD 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2158298083 157 GRHRRIVADRL--LAAdpsapDGFQLLLVTHDLELARA-CDEAVWIHGGH 203
Cdd:cd03225 167 PAGRRELLELLkkLKA-----EGKTIIIVTHDLDLLLElADRVIVLEDGK 211
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
2-202 |
1.36e-40 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 137.77 E-value: 1.36e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRdvKALRRTVGFVFANPAAQMVMPTVRED 80
Cdd:cd03226 15 ILDDLSLDLYAGEIiALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA--KERRKSIGYVMQDVDYQLFTDSVREE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 81 VELTVKSLRDDAGRrlakddvaarVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHR 160
Cdd:cd03226 93 LLLGLKELDAGNEQ----------AETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNM 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2158298083 161 RIVAD--RLLAADPSApdgfqLLLVTHDLE-LARACDEAVWIHGG 202
Cdd:cd03226 163 ERVGEliRELAAQGKA-----VIVITHDYEfLAKVCDRVLLLANG 202
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
3-213 |
2.45e-37 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 136.19 E-value: 2.45e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD----AVRDVKALRRTVGFVFANPAAQMV-MPT 76
Cdd:COG1123 281 VDDVSLTLRRGEtLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDltklSRRSLRELRRRVQMVFQDPYSSLNpRMT 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 77 VREDVELTVKSLRDDAGRRLAKddvaaRVAAALEEHRLTA-LADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLL 155
Cdd:COG1123 361 VGDIIAEPLRLHGLLSRAERRE-----RVAELLERVGLPPdLADRYPHELSGGQRQRVAIARALALEPKLLILDEPTSAL 435
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2158298083 156 DGRHRRIVADRL--LAADpsapDGFQLLLVTHDLELARA-CDEAVWIHGGHVERTGPAEDV 213
Cdd:COG1123 436 DVSVQAQILNLLrdLQRE----LGLTYLFISHDLAVVRYiADRVAVMYDGRIVEDGPTEEV 492
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
3-219 |
2.94e-34 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 127.71 E-value: 2.94e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTA-PRVAVIGENGSGKSTLARAIAGLAD---VVAGEVSVHGVDAVRDVKALR-RTVGFVFANPAAQMVMPTV 77
Cdd:COG1123 22 VDGVSLTIAPgETVALVGESGSGKSTLALALMGLLPhggRISGEVLLDGRDLLELSEALRgRRIGMVFQDPMTQLNPVTV 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 78 REDVELTVKslrddaGRRLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDG 157
Cdd:COG1123 102 GDQIAEALE------NLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALDPDLLIADEPTTALDV 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2158298083 158 RHRRIVADRLlaADPSAPDGFQLLLVTHDLEL-ARACDEAVWIHGGHVERTGPAEDVVEAYER 219
Cdd:COG1123 176 TTQAEILDLL--RELQRERGTTVLLITHDLGVvAEIADRVVVMDDGRIVEDGPPEEILAAPQA 236
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
3-213 |
3.21e-33 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 120.61 E-value: 3.21e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRD--VKALRRTVGFVFANPAAQMVMPTVRE 79
Cdd:TIGR04520 18 LKNVSLSIEKGEfVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGLDTLDEenLWEIRKKVGMVFQNPDNQFVGATVED 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 80 DV----E-LTVKslRDDAGRRLAKddvaarvaaALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSL 154
Cdd:TIGR04520 98 DVafglEnLGVP--REEMRKRVDE---------ALKLVGMEDFRDREPHLLSGGQKQRVAIAGVLAMRPDIIILDEATSM 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2158298083 155 LD--GRH------RRIVADRllaadpsapdGFQLLLVTHDLELARACDEAVWIHGGHVERTGPAEDV 213
Cdd:TIGR04520 167 LDpkGRKevletiRKLNKEE----------GITVISITHDMEEAVLADRVIVMNKGKIVAEGTPREI 223
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
3-219 |
3.45e-32 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 117.27 E-value: 3.45e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDVKALRRTVGFVFANPAaqmvMP---TVR 78
Cdd:COG4555 17 LKDVSFTAKDGEItGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQIGVLPDERG----LYdrlTVR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 79 EDVELTvKSLRDDAGRRLAKDDVAARVAAALEEHRltalaDRACLSLSSGQAQRLAM-CSVMTAgPSLVIADEPTSLLDG 157
Cdd:COG4555 93 ENIRYF-AELYGLFDEELKKRIEELIELLGLEEFL-----DRRVGELSTGMKKKVALaRALVHD-PKVLLLDEPTNGLDV 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2158298083 158 RHRRIVADRLLAAdpsAPDGFQLLLVTHDL-ELARACDEAVWIHGGHVERTGPAEDVVEAYER 219
Cdd:COG4555 166 MARRLLREILRAL---KKEGKTVLFSSHIMqEVEALCDRVVILHKGKVVAQGSLDELREEIGE 225
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
3-204 |
1.85e-31 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 114.51 E-value: 1.85e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVR-DVKAL----RRTVGFVFANPAaqmVMP- 75
Cdd:cd03255 20 LKGVSLSIEKGEfVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKlSEKELaafrRRHIGFVFQSFN---LLPd 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 76 -TVREDVELT---VKSLRDDAGRRLAKDdvaarvaaaLEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEP 151
Cdd:cd03255 97 lTALENVELPlllAGVPKKERRERAEEL---------LERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEP 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2158298083 152 TSLLDGRHRRIVADRLLaaDPSAPDGFQLLLVTHDLELARACDEAVWIHGGHV 204
Cdd:cd03255 168 TGNLDSETGKEVMELLR--ELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
3-222 |
2.10e-31 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 116.27 E-value: 2.10e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGV----DAVRDVkalRRTVGFVFANPAAQMVMPTV 77
Cdd:PRK13635 23 LKDVSFSVYEGEwVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMvlseETVWDV---RRQVGMVFQNPDNQFVGATV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 78 REDVELTVKSL---RDDAGRRLakddvaarvAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSL 154
Cdd:PRK13635 100 QDDVAFGLENIgvpREEMVERV---------DQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSM 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 155 LDGRHRRIVAD--RLLAADpsapDGFQLLLVTHDLELARACDEAVWIHGGHVERTGPAEDVVEAYERFLD 222
Cdd:PRK13635 171 LDPRGRREVLEtvRQLKEQ----KGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSGHMLQE 236
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
3-204 |
3.19e-31 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 114.14 E-value: 3.19e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTA-PRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAV----RDVKALRRTVGFVFANPAAQM--VMp 75
Cdd:cd03257 21 LDDVSFSIKKgETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLklsrRLRKIRRKEIQMVFQDPMSSLnpRM- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 76 TVREDVELTVKSLRDDAGRRLAKDDVAARVAA-ALEEHRLTALADRaclsLSSGQAQRLAMCSVMTAGPSLVIADEPTSL 154
Cdd:cd03257 100 TIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGvGLPEEVLNRYPHE----LSGGQRQRVAIARALALNPKLLIADEPTSA 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2158298083 155 LDgrhrRIVADRLLA--ADPSAPDGFQLLLVTHDLELARA-CDEAVWIHGGHV 204
Cdd:cd03257 176 LD----VSVQAQILDllKKLQEELGLTLLFITHDLGVVAKiADRVAVMYAGKI 224
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
3-223 |
7.96e-31 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 113.62 E-value: 7.96e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDVKALRRTVGFVFANPAAQMVMpTVREDV 81
Cdd:COG1131 16 LDGVSLTVEPGEIfGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRRIGYVPQEPALYPDL-TVRENL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 82 ELtVKSLRDDAGRRLAKddvaaRVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRR 161
Cdd:COG1131 95 RF-FARLYGLPRKEARE-----RIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPTSGLDPEARR 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2158298083 162 IVADRL--LAADPSApdgfqLLLVTHDL-ELARACDEAVWIHGGHVERTGPAEDVVEAY--ERFLDH 223
Cdd:COG1131 169 ELWELLreLAAEGKT-----VLLSTHYLeEAERLCDRVAIIDKGRIVADGTPDELKARLleDVFLEL 230
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
3-230 |
1.43e-30 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 112.97 E-value: 1.43e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTA-PRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD-AVRDVKALRRTVGFVFANPAAQmVMP--TVR 78
Cdd:COG1124 21 LKDVSLEVAPgESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPvTRRRRKAFRRRVQMVFQDPYAS-LHPrhTVD 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 79 EDVELTVKSLR-DDAGRRLAKddvaarvaaALEEHRLT-ALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLD 156
Cdd:COG1124 100 RILAEPLRIHGlPDREERIAE---------LLEQVGLPpSFLDRYPHQLSGGQRQRVAIARALILEPELLLLDEPTSALD 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2158298083 157 GRHRRIVADRLlaADPSAPDGFQLLLVTHDLEL-ARACDEAVWIHGGHVERTGPAEDVVEAyerfLDHAVAAELR 230
Cdd:COG1124 171 VSVQAEILNLL--KDLREERGLTYLFVSHDLAVvAHLCDRVAVMQNGRIVEELTVADLLAG----PKHPYTRELL 239
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
2-214 |
4.65e-30 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 112.06 E-value: 4.65e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVR-DVKALRRTVGFVFANPAAQMVMpTVRE 79
Cdd:COG1120 16 VLDDVSLSLPPGEVtALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASlSRRELARRIAYVPQEPPAPFGL-TVRE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 80 DVEL------TVKSLRDDAGRRLAkddvaarvAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTS 153
Cdd:COG1120 95 LVALgryphlGLFGRPSAEDREAV--------EEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPLLLLDEPTS 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2158298083 154 LLDGRHRRIVADRL--LAADpsapDGFQLLLVTHDLELA-RACDEAVWIHGGHVERTGPAEDVV 214
Cdd:COG1120 167 HLDLAHQLEVLELLrrLARE----RGRTVVMVLHDLNLAaRYADRLVLLKDGRIVAQGPPEEVL 226
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
2-203 |
6.58e-29 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 106.18 E-value: 6.58e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTA-PRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD-AVRDVKALRRTVGFVFanpaaqmvmptvre 79
Cdd:cd00267 14 ALDNVSLTLKAgEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDiAKLPLEELRRRIGYVP-------------- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 80 dveltvkslrddagrrlakddvaarvaaaleehrltaladraclSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRH 159
Cdd:cd00267 80 --------------------------------------------QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPAS 115
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2158298083 160 RRIVADRLLAAdpsAPDGFQLLLVTHDLELA-RACDEAVWIHGGH 203
Cdd:cd00267 116 RERLLELLREL---AEEGRTVIIVTHDPELAeLAADRVIVLKDGK 157
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
2-195 |
9.49e-27 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 102.17 E-value: 9.49e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDVKALRRTVGFVFANPAAQMVMpTVRED 80
Cdd:COG4133 17 LFSGLSFTLAAGEaLALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRLAYLGHADGLKPEL-TVREN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 81 VELTVKSLRDDAGRRLAkddvaarvAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHR 160
Cdd:COG4133 96 LRFWAALYGLRADREAI--------DEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEPFTALDAAGV 167
|
170 180 190
....*....|....*....|....*....|....*
gi 2158298083 161 RIVADRLLAAdpsAPDGFQLLLVTHDLELARACDE 195
Cdd:COG4133 168 ALLAELIAAH---LARGGAVLLTTHQPLELAAARV 199
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
2-220 |
6.38e-26 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 105.30 E-value: 6.38e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAP-RVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDaVR--DVKALRRTVGFVFANPaaQMVMPTVR 78
Cdd:COG2274 490 VLDNISLTIKPGeRVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGID-LRqiDPASLRRQIGVVLQDV--FLFSGTIR 566
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 79 EDVELTVKSLRDDAGRRLAKDDVAARVAAALEEHRLTALADRAcLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGR 158
Cdd:COG2274 567 ENITLGDPDATDEEIIEAARLAGLHDFIEALPMGYDTVVGEGG-SNLSGGQRQRLAIARALLRNPRILILDEATSALDAE 645
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2158298083 159 HRRIVADRLLAADPsapdGFQLLLVTHDLELARACDEAVWIHGGHVERTGPAEDVVEAYERF 220
Cdd:COG2274 646 TEAIILENLRRLLK----GRTVIIIAHRLSTIRLADRIIVLDKGRIVEDGTHEELLARKGLY 703
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
3-206 |
1.71e-25 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 99.35 E-value: 1.71e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAP-RVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVR-DVKAL----RRTVGFVFanpaaQM--VM 74
Cdd:COG1136 24 LRGVSLSIEAGeFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSlSERELarlrRRHIGFVF-----QFfnLL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 75 P--TVREDVELtvkslrddaGRRLAKDDVAARVAAALE-------EHRLTALADRaclsLSSGQAQRLAMCSVMTAGPSL 145
Cdd:COG1136 99 PelTALENVAL---------PLLLAGVSRKERRERAREllervglGDRLDHRPSQ----LSGGQQQRVAIARALVNRPKL 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2158298083 146 VIADEPTSLLDGRHRRIVAD--RLLAADpsapDGFQLLLVTHDLELARACDEAVWIHGGHVER 206
Cdd:COG1136 166 ILADEPTGNLDSKTGEEVLEllRELNRE----LGTTIVMVTHDPELAARADRVIRLRDGRIVS 224
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
2-204 |
1.81e-25 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 97.89 E-value: 1.81e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD-AVRDVKALRRTVGFVfanpaaqmvmPTVre 79
Cdd:cd03214 14 VLDDLSLSIEAGEiVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDlASLSPKELARKIAYV----------PQA-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 80 dveltvkslrddagrrlakddvaarvaaaLEEHRLTALADRACLSLSSGQAQR--LAMCsvMTAGPSLVIADEPTSLLDG 157
Cdd:cd03214 82 -----------------------------LELLGLAHLADRPFNELSGGERQRvlLARA--LAQEPPILLLDEPTSHLDI 130
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2158298083 158 RHRRIVADRL--LAADpsapDGFQLLLVTHDLELA-RACDEAVWIHGGHV 204
Cdd:cd03214 131 AHQIELLELLrrLARE----RGKTVVMVLHDLNLAaRYADRVILLKDGRI 176
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
3-204 |
3.15e-25 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 97.08 E-value: 3.15e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDVKALRRTVGFVFANPaaqMVMPtvredv 81
Cdd:cd03230 16 LDDISLTVEKGEIyGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEP---SLYE------ 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 82 ELTVkslrddagrrlakddvaarvaaalEEHrltaladracLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRR 161
Cdd:cd03230 87 NLTV------------------------REN----------LKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRR 132
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2158298083 162 IVADRL--LAADPSApdgfqLLLVTHDL-ELARACDEAVWIHGGHV 204
Cdd:cd03230 133 EFWELLreLKKEGKT-----ILLSSHILeEAERLCDRVAILNNGRI 173
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
3-216 |
1.06e-24 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 97.41 E-value: 1.06e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTL-TAPRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVrDVKALRRTVGFVFANPAAQMVMpTVREDV 81
Cdd:cd03296 18 LDDVSLDIpSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDAT-DVPVQERNVGFVFQHYALFRHM-TVFDNV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 82 ELTVKSLRddAGRRLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHR- 160
Cdd:cd03296 96 AFGLRVKP--RSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRk 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2158298083 161 ------RIVADRLlaadpsapdGFQLLLVTHD----LELAracDEAVWIHGGHVERTGPAEDVVEA 216
Cdd:cd03296 174 elrrwlRRLHDEL---------HVTTVFVTHDqeeaLEVA---DRVVVMNKGRIEQVGTPDEVYDH 227
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
2-204 |
2.80e-24 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 95.65 E-value: 2.80e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAP-RVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD-AVRDVKALRRTVGFVFANPAaqMVMPTVRE 79
Cdd:COG4619 15 ILSPVSLTLEAGeCVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPlSAMPPPEWRRQVAYVPQEPA--LWGGTVRD 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 80 DVELtVKSLRDDAGRRlakddvaARVAAALEEHRLTA-LADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGR 158
Cdd:COG4619 93 NLPF-PFQLRERKFDR-------ERALELLERLGLPPdILDKPVERLSGGERQRLALIRALLLQPDVLLLDEPTSALDPE 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2158298083 159 HRRIVADRLlaADPSAPDGFQLLLVTHDLE-LARACDEAVWIHGGHV 204
Cdd:COG4619 165 NTRRVEELL--REYLAEEGRAVLWVSHDPEqIERVADRVLTLEAGRL 209
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
1-216 |
3.52e-24 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 98.30 E-value: 3.52e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 1 MLLDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGL--ADvvAGEVSVHGVDAVRDVKALRRTVGFVFANPAAqmvMP-- 75
Cdd:COG1118 16 TLLDDVSLEIASGElVALLGPSGSGKTTLLRIIAGLetPD--SGRIVLNGRDLFTNLPPRERRVGFVFQHYAL---FPhm 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 76 TVREDVELTVKSLRDDAGRRLAKddvaarVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLL 155
Cdd:COG1118 91 TVAENIAFGLRVRPPSKAEIRAR------VEELLELVQLEGLADRYPSQLSGGQRQRVALARALAVEPEVLLLDEPFGAL 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2158298083 156 DGRHR---RIVADRLLaadpsapDGFQL--LLVTHDLELA-RACDEAVWIHGGHVERTGPAEDVVEA 216
Cdd:COG1118 165 DAKVRkelRRWLRRLH-------DELGGttVFVTHDQEEAlELADRVVVMNQGRIEQVGTPDEVYDR 224
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
7-224 |
3.78e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 96.60 E-value: 3.78e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 7 DLTLTAPR---VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRD-VKALRRTVGFVFANPAAQMVMPTVREDVE 82
Cdd:PRK13632 27 NVSFEINEgeyVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKEnLKEIRKKIGIIFQNPDNQFIGATVEDDIA 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 83 LTVKSlrddagRRLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRI 162
Cdd:PRK13632 107 FGLEN------KKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKRE 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2158298083 163 VADRLLAADPSAPDgfQLLLVTHDLELARACDEAVWIHGGHVERTGPAEDVVEAyERFLDHA 224
Cdd:PRK13632 181 IKKIMVDLRKTRKK--TLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN-KEILEKA 239
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
2-203 |
5.32e-24 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 93.99 E-value: 5.32e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAP-RVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDaVRDV--KALRRTVGFVFANPaaQMVMPTVR 78
Cdd:cd03228 17 VLKDVSLTIKPGeKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVD-LRDLdlESLRKNIAYVPQDP--FLFSGTIR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 79 EDVeltvkslrddagrrlakddvaarvaaaleehrltaladraclsLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGR 158
Cdd:cd03228 94 ENI-------------------------------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPE 130
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2158298083 159 HRRIVADRLLAadpsAPDGFQLLLVTHDLELARACDEAVWIHGGH 203
Cdd:cd03228 131 TEALILEALRA----LAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
3-153 |
1.09e-23 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 92.33 E-value: 1.09e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTA-PRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD-AVRDVKALRRTVGFVFANPAaqmVMP--TVR 78
Cdd:pfam00005 1 LKNVSLTLNPgEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDlTDDERKSLRKEIGYVFQDPQ---LFPrlTVR 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2158298083 79 EDVELTVKslrddaGRRLAKDDVAARVAAALEEHRLTALADRACL----SLSSGQAQRLAMCSVMTAGPSLVIADEPTS 153
Cdd:pfam00005 78 ENLRLGLL------LKGLSKREKDARAEEALEKLGLGDLADRPVGerpgTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
16-222 |
1.37e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 95.20 E-value: 1.37e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 16 AVIGENGSGKSTLARAIAGLADVVAGEV--SVHGVDAvRDVKALRRTVGFVFANPAAQMVMPTVREDVELTVKSL---RD 90
Cdd:PRK13648 39 SIVGHNGSGKSTIAKLMIGIEKVKSGEIfyNNQAITD-DNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHavpYD 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 91 DAGRRLAKDdvaarvaaaLEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRIVADrlLAA 170
Cdd:PRK13648 118 EMHRRVSEA---------LKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLD--LVR 186
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2158298083 171 DPSAPDGFQLLLVTHDLELARACDEAVWIHGGHVERTGPAEDVVEAYERFLD 222
Cdd:PRK13648 187 KVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEELTR 238
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
2-216 |
1.54e-23 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 98.29 E-value: 1.54e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAP-RVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD-AVRDVKALRRTVGFVFANPaaQMVMPTVRE 79
Cdd:COG4988 352 ALDGLSLTIPPGeRVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDlSDLDPASWRRQIAWVPQNP--YLFAGTIRE 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 80 DVELTVKSLRDDAGRRLAKDDVAARVAAALEEHRLTALADRAcLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRH 159
Cdd:COG4988 430 NLRLGRPDASDEELEAALEAAGLDEFVAALPDGLDTPLGEGG-RGLSGGQAQRLALARALLRDAPLLLLDEPTAHLDAET 508
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2158298083 160 RRIVADRLLAadpsAPDGFQLLLVTHDLELARACDEAVWIHGGHVERTGPAEDVVEA 216
Cdd:COG4988 509 EAEILQALRR----LAKGRTVILITHRLALLAQADRILVLDDGRIVEQGTHEELLAK 561
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
15-214 |
1.66e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 95.05 E-value: 1.66e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 15 VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDA--VRDVKALRRTVGFVFANPAAQMVMPTVREDVELTVKSL---- 88
Cdd:PRK13644 31 IGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTgdFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLclpp 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 89 ---RDDAGRRLAKDDvaarvaaaLEEHRltalaDRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRIVAD 165
Cdd:PRK13644 111 ieiRKRVDRALAEIG--------LEKYR-----HRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLE 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2158298083 166 RLLAADPSapdGFQLLLVTHDLELARACDEAVWIHGGHVERTGPAEDVV 214
Cdd:PRK13644 178 RIKKLHEK---GKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVL 223
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
7-208 |
3.29e-23 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 92.97 E-value: 3.29e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 7 DLTLTAPR---VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDaVRDVKALRRTVGFVFANPAaqmVMP--TVREDV 81
Cdd:cd03259 18 DLSLTVEPgefLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRD-VTGVPPERRNIGMVFQDYA---LFPhlTVAENI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 82 ELTVKSlrddagRRLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRR 161
Cdd:cd03259 94 AFGLKL------RGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLRE 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2158298083 162 IVADRLLAADPSApdGFQLLLVTHDLELA-RACDEAVWIHGGHVERTG 208
Cdd:cd03259 168 ELREELKELQREL--GITTIYVTHDQEEAlALADRIAVMNEGRIVQVG 213
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
3-204 |
4.77e-23 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 92.59 E-value: 4.77e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTA-PRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGV---DAVRDVKALRRTVGFVFA--NPAAQMvmpT 76
Cdd:cd03262 16 LKGIDLTVKKgEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLkltDDKKNINELRQKVGMVFQqfNLFPHL---T 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 77 VREDVEL---TVKSLRDDAGRRLAKddvaarvaAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTS 153
Cdd:cd03262 93 VLENITLapiKVKGMSKAEAEERAL--------ELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTS 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2158298083 154 LLDGRHRRIVADRLLAAdpsAPDGFQLLLVTHDLELAR-ACDEAVWIHGGHV 204
Cdd:cd03262 165 ALDPELVGEVLDVMKDL---AEEGMTMVVVTHEMGFAReVADRVIFMDDGRI 213
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
3-216 |
7.30e-23 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 92.84 E-value: 7.30e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGvdavRDVKALRRTVGFVFANPAAQMVMP-TVRED 80
Cdd:COG1121 22 LEDVSLTIPPGEfVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFG----KPPRRARRRIGYVPQRAEVDWDFPiTVRDV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 81 VELtvkslrddaGR-------RLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTS 153
Cdd:COG1121 98 VLM---------GRygrrglfRRPSRADREAVDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQDPDLLLLDEPFA 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2158298083 154 LLDGRHRRIVADRL--LAAdpsapDGFQLLLVTHDLELARA-CDEAVWIHGGHVeRTGPAEDVVEA 216
Cdd:COG1121 169 GVDAATEEALYELLreLRR-----EGKTILVVTHDLGAVREyFDRVLLLNRGLV-AHGPPEEVLTP 228
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
1-208 |
2.45e-22 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 90.72 E-value: 2.45e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 1 MLLDGVDLTLTAPRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDVKALRRTVGFVfanPAAQMVMP--TVR 78
Cdd:cd03264 14 RALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYL---PQEFGVYPnfTVR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 79 EDVElTVKSLRDDAGRRLAKDDVAARVAAALEEHrltalADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDG- 157
Cdd:cd03264 91 EFLD-YIAWLKGIPSKEVKARVDEVLELVNLGDR-----AKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPe 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2158298083 158 ---RHRRIVADrlLAADPSapdgfqLLLVTHDLE-LARACDEAVWIHGGHVERTG 208
Cdd:cd03264 165 eriRFRNLLSE--LGEDRI------VILSTHIVEdVESLCNQVAVLNKGKLVFEG 211
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
3-203 |
2.96e-22 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 89.55 E-value: 2.96e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTA-PRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD---AVRDVKALRRTVGFVFANPAaqmVMP--T 76
Cdd:cd03229 16 LNDVSLNIEAgEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDltdLEDELPPLRRRIGMVFQDFA---LFPhlT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 77 VREDVEltvkslrddagrrlakddvaarvaaaleehrltaladracLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLD 156
Cdd:cd03229 93 VLENIA----------------------------------------LGLSGGQQQRVALARALAMDPDVLLLDEPTSALD 132
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2158298083 157 GRHRRIVadRLLAADPSAPDGFQLLLVTHDLELA-RACDEAVWIHGGH 203
Cdd:cd03229 133 PITRREV--RALLKSLQAQLGITVVLVTHDLDEAaRLADRVVVLRDGK 178
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
3-213 |
3.26e-22 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 90.72 E-value: 3.26e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAV----RDVKALRRTVGFVFanpaaQ----MV 73
Cdd:cd03258 21 LKDVSLSVPKGEIfGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTllsgKELRKARRRIGMIF-----QhfnlLS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 74 MPTVREDVELTVKslrddagrrLAKDDVAARVAAALEEHRLTALADRACL---SLSSGQAQRLAMCSVMTAGPSLVIADE 150
Cdd:cd03258 96 SRTVFENVALPLE---------IAGVPKAEIEERVLELLELVGLEDKADAypaQLSGGQKQRVGIARALANNPKVLLCDE 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2158298083 151 PTSLLDGRHRRIVADRLLaaDPSAPDGFQLLLVTHDLELARA-CDEAVWIHGGHVERTGPAEDV 213
Cdd:cd03258 167 ATSALDPETTQSILALLR--DINRELGLTIVLITHEMEVVKRiCDRVAVMEKGEVVEEGTVEEV 228
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
6-208 |
5.62e-22 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 89.66 E-value: 5.62e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 6 VDLTLTAPRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDVKAL-----RRTVGFVFANPAaqmVMP--TVR 78
Cdd:cd03297 17 IDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKInlppqQRKIGLVFQQYA---LFPhlNVR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 79 EDVELTVKSLRDDAGRRLAkddvaarvAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDgr 158
Cdd:cd03297 94 ENLAFGLKRKRNREDRISV--------DELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALD-- 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2158298083 159 hrRIVADRLLAADPSAPDGFQL--LLVTHDL-ELARACDEAVWIHGGHVERTG 208
Cdd:cd03297 164 --RALRLQLLPELKQIKKNLNIpvIFVTHDLsEAEYLADRIVVMEDGRLQYIG 214
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
7-213 |
5.81e-22 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 89.93 E-value: 5.81e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 7 DLTLTAPR---VAVIGENGSGKSTLARAIAGLADV-----VAGEVSVHGVDAV---RDVKALRRTVGFVFANPAaqMVMP 75
Cdd:cd03260 18 DISLDIPKgeiTALIGPSGCGKSTLLRLLNRLNDLipgapDEGEVLLDGKDIYdldVDVLELRRRVGMVFQKPN--PFPG 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 76 TVREDVELTVKsLRDDAGRRLAKDdvaarvaaaLEEHRLT--ALADRAC-----LSLSSGQAQRLAMCSVMTAGPSLVIA 148
Cdd:cd03260 96 SIYDNVAYGLR-LHGIKLKEELDE---------RVEEALRkaALWDEVKdrlhaLGLSGGQQQRLCLARALANEPEVLLL 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2158298083 149 DEPTSLLDGRHRRIVADRL--LAADPSapdgfqLLLVTHDLELA-RACDEAVWIHGGHVERTGPAEDV 213
Cdd:cd03260 166 DEPTSALDPISTAKIEELIaeLKKEYT------IVIVTHNMQQAaRVADRTAFLLNGRLVEFGPTEQI 227
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
7-213 |
8.18e-22 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 91.68 E-value: 8.18e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 7 DLTLTAPR---VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRdVKALRRTVGFVFANPAAQMVMpTVREDVE- 82
Cdd:PRK10851 20 DISLDIPSgqmVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSR-LHARDRKVGFVFQHYALFRHM-TVFDNIAf 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 83 -LTVKSLRddagRRLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHR- 160
Cdd:PRK10851 98 gLTVLPRR----ERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRk 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 161 ------RIVADRLlaadpsapdGFQLLLVTHDLELA-RACDEAVWIHGGHVERTGPAEDV 213
Cdd:PRK10851 174 elrrwlRQLHEEL---------KFTSVFVTHDQEEAmEVADRVVVMSQGNIEQAGTPDQV 224
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
2-213 |
1.50e-21 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 89.45 E-value: 1.50e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDaVRDVK----ALRR-------TVGFVFanpa 69
Cdd:PRK13548 17 LLDDVSLTLRPGEVvAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRP-LADWSpaelARRRavlpqhsSLSFPF---- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 70 aqmvmpTVREDVEL--TVKSLRDDAGRRLAkddvaarvAAALEEHRLTALADRACLSLSSGQAQR------LAMCSVMTA 141
Cdd:PRK13548 92 ------TVEEVVAMgrAPHGLSRAEDDALV--------AAALAQVDLAHLAGRDYPQLSGGEQQRvqlarvLAQLWEPDG 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2158298083 142 GPSLVIADEPTSLLDGRHRRIVADrlLAADPSAPDGFQLLLVTHDLELA-RACDEAVWIHGGHVERTGPAEDV 213
Cdd:PRK13548 158 PPRWLLLDEPTSALDLAHQHHVLR--LARQLAHERGLAVIVVLHDLNLAaRYADRIVLLHQGRLVADGTPAEV 228
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
3-197 |
2.05e-21 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 88.30 E-value: 2.05e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGvdavRDVKALRRTVGFVFANPAaqmVMP--TVRE 79
Cdd:cd03293 20 LEDISLSVEEGEfVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDG----EPVTGPGPDRGYVFQQDA---LLPwlTVLD 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 80 DVELTVKslrddaGRRLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRH 159
Cdd:cd03293 93 NVALGLE------LQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALT 166
|
170 180 190
....*....|....*....|....*....|....*...
gi 2158298083 160 RRIVADRLLAAdpSAPDGFQLLLVTHDLelaracDEAV 197
Cdd:cd03293 167 REQLQEELLDI--WRETGKTVLLVTHDI------DEAV 196
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
3-215 |
4.35e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 88.61 E-value: 4.35e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD-AVRDVKALRRTVGFVFANPAAQMVMPTVRED 80
Cdd:PRK13642 23 LNGVSFSITKGEwVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELlTAENVWNLRRKIGMVFQNPDNQFVGATVEDD 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 81 VELTVKSlrddagRRLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHR 160
Cdd:PRK13642 103 VAFGMEN------QGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGR 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2158298083 161 rivaDRLLAADPSAPDGFQL--LLVTHDLELARACDEAVWIHGGHV-------ERTGPAEDVVE 215
Cdd:PRK13642 177 ----QEIMRVIHEIKEKYQLtvLSITHDLDEAASSDRILVMKAGEIikeaapsELFATSEDMVE 236
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
3-216 |
4.47e-21 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 88.01 E-value: 4.47e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTL-TAPRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD----AVRDVKALRRTVGFVFANPA---AQMVM 74
Cdd:cd03256 17 LKDVSLSInPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDinklKGKALRQLRRQIGMIFQQFNlieRLSVL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 75 PTV---REDVELTVKSLrddagRRLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEP 151
Cdd:cd03256 97 ENVlsgRLGRRSTWRSL-----FGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEP 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2158298083 152 TSLLDGRHRRIVADRLLAAdpSAPDGFQLLLVTHDLELARA-CDEAVWIHGGHVERTGPAEDVVEA 216
Cdd:cd03256 172 VASLDPASSRQVMDLLKRI--NREEGITVIVSLHQVDLAREyADRIVGLKDGRIVFDGPPAELTDE 235
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
15-222 |
6.06e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 88.25 E-value: 6.06e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 15 VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRD-VKALRRTVGFVFANPAAQMVMPTVREDVELTVKSlrddag 93
Cdd:PRK13650 36 LSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEEnVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLEN------ 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 94 RRLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRivadRLLAADPS 173
Cdd:PRK13650 110 KGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRL----ELIKTIKG 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2158298083 174 APDGFQL--LLVTHDLELARACDEAVWIHGGHVERTGPAEDVVEAYERFLD 222
Cdd:PRK13650 186 IRDDYQMtvISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGNDLLQ 236
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
3-197 |
6.11e-21 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 87.84 E-value: 6.11e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGvdavRDVKALRRTVGFVFANPAaqmVMP--TVRE 79
Cdd:COG1116 27 LDDVSLTVAAGEfVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDG----KPVTGPGPDRGVVFQEPA---LLPwlTVLD 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 80 DVELTVKslrddaGRRLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRH 159
Cdd:COG1116 100 NVALGLE------LRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDPEVLLMDEPFGALDALT 173
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2158298083 160 RRIVAD---RLLAAdpsapDGFQLLLVTHDLelaracDEAV 197
Cdd:COG1116 174 RERLQDellRLWQE-----TGKTVLFVTHDV------DEAV 203
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
3-223 |
6.48e-21 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 87.46 E-value: 6.48e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRVAV-IGENGSGKSTLARAIAGLADVVAGEVSVHGV---DAVRDVKALRRTVGFVFA--NPAAQMvmpT 76
Cdd:PRK09493 17 LHNIDLNIDQGEVVViIGPSGSGKSTLLRCINKLEEITSGDLIVDGLkvnDPKVDERLIRQEAGMVFQqfYLFPHL---T 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 77 VREDV---ELTVKSLRDDAGRRLAKDDvaarvaaaLEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTS 153
Cdd:PRK09493 94 ALENVmfgPLRVRGASKEEAEKQAREL--------LAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTS 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2158298083 154 LLDG--RHRRIVADRLLAAdpsapDGFQLLLVTHDLELAR-ACDEAVWIHGGHVERTGPAEDVVEA--YER---FLDH 223
Cdd:PRK09493 166 ALDPelRHEVLKVMQDLAE-----EGMTMVIVTHEIGFAEkVASRLIFIDKGRIAEDGDPQVLIKNppSQRlqeFLQH 238
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
7-218 |
6.99e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 88.32 E-value: 6.99e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 7 DLTLTAPR---VAVIGENGSGKSTLARAIAGLA---DVVAGEVSVHGVDAVRD-VKALRRTVGFVFANPAAQMVMPTVRE 79
Cdd:PRK13640 25 DISFSIPRgswTALIGHNGSGKSTISKLINGLLlpdDNPNSKITVDGITLTAKtVWDIREKVGIVFQNPDNQFVGATVGD 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 80 DVELTVKSlrddagRRLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLD--G 157
Cdd:PRK13640 105 DVAFGLEN------RAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDpaG 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2158298083 158 RHRRIVADRLLAADpsapDGFQLLLVTHDLELARACDEAVWIHGGHVERTGPAEDVVEAYE 218
Cdd:PRK13640 179 KEQILKLIRKLKKK----NNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSKVE 235
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
3-197 |
1.38e-20 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 89.65 E-value: 1.38e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTA-PRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD-AVRDVKALRRTVGFVFANPaaQMVMPTVRED 80
Cdd:TIGR02857 338 LRPVSFTVPPgERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPlADADADSWRDQIAWVPQHP--FLFAGTIAEN 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 81 VELTVKSLRDDAGRRLAKDDVAARVAAALEEHRLTALADRAClSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHR 160
Cdd:TIGR02857 416 IRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGA-GLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETE 494
|
170 180 190
....*....|....*....|....*....|....*..
gi 2158298083 161 RIVADRLLAadpsAPDGFQLLLVTHDLELARACDEAV 197
Cdd:TIGR02857 495 AEVLEALRA----LAQGRTVLLVTHRLALAALADRIV 527
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
2-194 |
2.20e-20 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 85.99 E-value: 2.20e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLT-APRVAVIGENGSGKSTLARAIAGLADVVAGEV-----SVHGVDAVRDVKALRRTVGFVFanpAAQMVMP 75
Cdd:PRK10584 25 ILTGVELVVKrGETIALIGESGSGKSTLLAILAGLDDGSSGEVslvgqPLHQMDEEARAKLRAKHVGFVF---QSFMLIP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 76 TV--REDVELTVkSLRDDAGRRLAKDDVAARVAAALEEhRLTALADRaclsLSSGQAQRLAMCSVMTAGPSLVIADEPTS 153
Cdd:PRK10584 102 TLnaLENVELPA-LLRGESSRQSRNGAKALLEQLGLGK-RLDHLPAQ----LSGGEQQRVALARAFNGRPDVLFADEPTG 175
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2158298083 154 LLDGRHRRIVADRLLAADPSApdGFQLLLVTHDLELARACD 194
Cdd:PRK10584 176 NLDRQTGDKIADLLFSLNREH--GTTLILVTHDLQLAARCD 214
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
15-211 |
3.90e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 86.29 E-value: 3.90e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 15 VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDA--VRDVKALRRTVGFVFANPAAQMVMPTVREDVELTVKSLRDDA 92
Cdd:PRK13633 39 LVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTsdEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPP 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 93 gRRLAKDDVAARVAAALEEHRltalaDRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRIVADRLlaADP 172
Cdd:PRK13633 119 -EEIRERVDESLKKVGMYEYR-----RHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTI--KEL 190
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2158298083 173 SAPDGFQLLLVTHDLELARACDEAVWIHGGHVERTG-PAE 211
Cdd:PRK13633 191 NKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGtPKE 230
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
3-213 |
4.48e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 86.25 E-value: 4.48e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTL-TAPRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDaVRDVKA----LRRTVGFVFANPAAQMVMPTV 77
Cdd:PRK13637 23 LDNVNIEIeDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVD-ITDKKVklsdIRKKVGLVFQYPEYQLFEETI 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 78 REDVELTVKSL---RDDAGRRLAKDDVAARVAAAleehrltALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSL 154
Cdd:PRK13637 102 EKDIAFGPINLglsEEEIENRVKRAMNIVGLDYE-------DYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAG 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2158298083 155 LDGRHRrivaDRLLAADPSAPDGFQL--LLVTHDLE-LARACDEAVWIHGGHVERTGPAEDV 213
Cdd:PRK13637 175 LDPKGR----DEILNKIKELHKEYNMtiILVSHSMEdVAKLADRIIVMNKGKCELQGTPREV 232
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
3-213 |
4.75e-20 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 84.86 E-value: 4.75e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLtaPR---VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVR----DVKALRRTVGFVFANPAAQMVMp 75
Cdd:cd03261 16 LKGVDLDV--RRgeiLAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGlseaELYRLRRRMGMLFQSGALFDSL- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 76 TVREDVELtvkSLRDDagRRLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLL 155
Cdd:cd03261 93 TVFENVAF---PLREH--TRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGL 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2158298083 156 DgrhrRIVADRL--LAADPSAPDGFQLLLVTHDL-ELARACDEAVWIHGGHVERTGPAEDV 213
Cdd:cd03261 168 D----PIASGVIddLIRSLKKELGLTSIMVTHDLdTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
15-213 |
5.39e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 85.84 E-value: 5.39e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 15 VAVIGENGSGKSTLARAIAGLADVVAGEVSVhGVDAV------RDVKALRRTVGFVFANPAAQMVMPTVREDVELTVKSL 88
Cdd:PRK13634 36 VAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI-GERVItagkknKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 89 ---RDDAGRRLAKddvaARVAAALEEhrltALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRIVAD 165
Cdd:PRK13634 115 gvsEEDAKQKARE----MIELVGLPE----ELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMME 186
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2158298083 166 ---RLlaadpSAPDGFQLLLVTHDLE-LARACDEAVWIHGGHVERTGPAEDV 213
Cdd:PRK13634 187 mfyKL-----HKEKGLTTVLVTHSMEdAARYADQIVVMHKGTVFLQGTPREI 233
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
3-216 |
1.35e-19 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 85.10 E-value: 1.35e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLAD---VVAGEVSVHGVDAV----RDVKALR-RTVGFVFANPAAQM- 72
Cdd:COG0444 21 VDGVSFDVRRGEtLGLVGESGSGKSTLARAILGLLPppgITSGEILFDGEDLLklseKELRKIRgREIQMIFQDPMTSLn 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 73 -VMpTVREDVELTVKslrddAGRRLAKDDVAARVAAALEEHRLTALADRACL---SLSSGQAQRLAMCSVMTAGPSLVIA 148
Cdd:COG0444 101 pVM-TVGDQIAEPLR-----IHGGLSKAEARERAIELLERVGLPDPERRLDRyphELSGGMRQRVMIARALALEPKLLIA 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2158298083 149 DEPTSLLDGRHRRIVADRL--LAADpsapDGFQLLLVTHDLELARA-CDEAVWIHGGH-VErTGPAEDVVEA 216
Cdd:COG0444 175 DEPTTALDVTIQAQILNLLkdLQRE----LGLAILFITHDLGVVAEiADRVAVMYAGRiVE-EGPVEELFEN 241
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
7-202 |
1.57e-19 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 83.32 E-value: 1.57e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 7 DLTLTAPR---VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDVKALRRTVGFVfanPAAQMVMP--TVREDV 81
Cdd:cd03263 20 DLSLNVYKgeiFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC---PQFDALFDelTVREHL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 82 EL--TVKSLRDDAGRRLAKddvaarvaAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRH 159
Cdd:cd03263 97 RFyaRLKGLPKSEIKEEVE--------LLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2158298083 160 RRIVADRLLAADPSAPdgfqLLLVTHDLELARA-CDEAVWIHGG 202
Cdd:cd03263 169 RRAIWDLILEVRKGRS----IILTTHSMDEAEAlCDRIAIMSDG 208
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
3-211 |
1.70e-19 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 83.64 E-value: 1.70e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD----------AVRdvkalRRTVGFVFANpaaQ 71
Cdd:COG4181 28 LKGISLEVEAGEsVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDlfaldedaraRLR-----ARHVGFVFQS---F 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 72 MVMP--TVREDV----ELtvKSLRDDAGRRLAkddvaarvaaALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSL 145
Cdd:COG4181 100 QLLPtlTALENVmlplEL--AGRRDARARARA----------LLERVGLGHRLDHYPAQLSGGEQQRVALARAFATEPAI 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2158298083 146 VIADEPTSLLDGRHRRIVADRLLAADPSApdGFQLLLVTHDLELARACDEAVWIHGGHVERTGPAE 211
Cdd:COG4181 168 LFADEPTGNLDAATGEQIIDLLFELNRER--GTTLVLVTHDPALAARCDRVLRLRAGRLVEDTAAT 231
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
3-189 |
1.78e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 84.47 E-value: 1.78e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTltAPR---VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVR-DVKALRRTVGFVFANPAAQMVMPTVR 78
Cdd:PRK13652 20 LNNINFI--APRnsrIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKeNIREVRKFVGLVFQNPDDQIFSPTVE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 79 EDV----------ELTVKSLRDDAGRRLAkddvaarvaaaLEEHRltalaDRACLSLSSGQAQRLAMCSVMTAGPSLVIA 148
Cdd:PRK13652 98 QDIafgpinlgldEETVAHRVSSALHMLG-----------LEELR-----DRVPHHLSGGEKKRVAIAGVIAMEPQVLVL 161
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2158298083 149 DEPTSLLDGRHRRIVADRLlaADPSAPDGFQLLLVTHDLEL 189
Cdd:PRK13652 162 DEPTAGLDPQGVKELIDFL--NDLPETYGMTVIFSTHQLDL 200
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
3-197 |
2.08e-19 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 82.97 E-value: 2.08e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDvkalRRTVGFVFANPAAQMVMP-TVRED 80
Cdd:cd03235 15 LEDVSFEVKPGEfLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKE----RKRIGYVPQRRSIDRDFPiSVRDV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 81 VELTvkSLRDDAGRRLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQR--LAMCSVMTagPSLVIADEPTSLLDGR 158
Cdd:cd03235 91 VLMG--LYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRvlLARALVQD--PDLLLLDEPFAGVDPK 166
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2158298083 159 HRRIVADRL--LAAdpsapDGFQLLLVTHDLELA-RACDEAV 197
Cdd:cd03235 167 TQEDIYELLreLRR-----EGMTILVVTHDLGLVlEYFDRVL 203
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
3-219 |
3.73e-19 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 84.38 E-value: 3.73e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLtAPR--VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDaVRDVKALRRTVGFVFANPAaqmVMP--TVR 78
Cdd:COG3842 21 LDDVSLSI-EPGefVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRD-VTGLPPEKRNVGMVFQDYA---LFPhlTVA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 79 EDVE--LTVKSL-RDDAGRRLAKddvaarvaaALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLL 155
Cdd:COG3842 96 ENVAfgLRMRGVpKAEIRARVAE---------LLELVGLEGLADRYPHQLSGGQQQRVALARALAPEPRVLLLDEPLSAL 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2158298083 156 DGRHRRIVAD---RLLAadpsapdgfQL----LLVTHDLElaracdEAVWI-------HGGHVERTGPAEDVveaYER 219
Cdd:COG3842 167 DAKLREEMREelrRLQR---------ELgitfIYVTHDQE------EALALadriavmNDGRIEQVGTPEEI---YER 226
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
2-220 |
3.89e-19 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 85.59 E-value: 3.89e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTA-PRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDaVRDV--KALRRTVGFVFANP---AAqmvmp 75
Cdd:COG4987 350 VLDGLSLTLPPgERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVD-LRDLdeDDLRRRIAVVPQRPhlfDT----- 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 76 TVREDVELTvkslRDDAGrrlakddvaarvaaaleEHRLTALADRACLS--------------------LSSGQAQRLAM 135
Cdd:COG4987 424 TLRENLRLA----RPDAT-----------------DEELWAALERVGLGdwlaalpdgldtwlgeggrrLSGGERRRLAL 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 136 CSVMTAGPSLVIADEPTSLLDGRHRRIVADRLLAADPsapdGFQLLLVTHDLELARACDEAVWIHGGHVERTGPAEDVVE 215
Cdd:COG4987 483 ARALLRDAPILLLDEPTEGLDAATEQALLADLLEALA----GRTVLLITHRLAGLERMDRILVLEDGRIVEQGTHEELLA 558
|
....*
gi 2158298083 216 AYERF 220
Cdd:COG4987 559 QNGRY 563
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
3-208 |
9.89e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 82.75 E-value: 9.89e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRVA-VIGENGSGKSTLARAIAGLADVVAGEVSV------HGVDAVRDVKALRRTVGFVFANPAAQMVMP 75
Cdd:PRK13645 27 LNNTSLTFKKNKVTcVIGTTGSGKSTMIQLTNGLIISETGQTIVgdyaipANLKKIKEVKRLRKEIGLVFQFPEYQLFQE 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 76 TVREDVELTVKSLRDDAGRRLAKDDVAARVAAALEEHrltalADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLL 155
Cdd:PRK13645 107 TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDY-----VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGL 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2158298083 156 DGRHRRIVADRLLAADPSApdGFQLLLVTHDL-ELARACDEAVWIHGGHVERTG 208
Cdd:PRK13645 182 DPKGEEDFINLFERLNKEY--KKRIIMVTHNMdQVLRIADEVIVMHEGKVISIG 233
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
3-190 |
1.12e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 82.09 E-value: 1.12e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTL-TAPRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD-AVRDVKALRRTVGFVFANPAAQMVMPTVRED 80
Cdd:PRK13647 21 LKGLSLSIpEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREvNAENEKWVRSKVGLVFQDPDDQVFSSTVWDD 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 81 VELTVKSLRddagrrLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHR 160
Cdd:PRK13647 101 VAFGPVNMG------LDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQ 174
|
170 180 190
....*....|....*....|....*....|
gi 2158298083 161 RIVADRLlaaDPSAPDGFQLLLVTHDLELA 190
Cdd:PRK13647 175 ETLMEIL---DRLHNQGKTVIVATHDVDLA 201
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
3-213 |
2.41e-18 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 81.93 E-value: 2.41e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVR----DVKALRRTVGFVFANPAA-----QM 72
Cdd:PRK11308 31 LDGVSFTLERGKtLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKadpeAQKLLRQKIQIVFQNPYGslnprKK 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 73 VMPTVREDVELTVKslrDDAGRRLAKDDVAARVAAALEEHrltalADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPT 152
Cdd:PRK11308 111 VGQILEEPLLINTS---LSAAERREKALAMMAKVGLRPEH-----YDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPV 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2158298083 153 SLLDGRHRRIVADrlLAADPSAPDGFQLLLVTHDLELAR-ACDEAVWIHGGHVERTGPAEDV 213
Cdd:PRK11308 183 SALDVSVQAQVLN--LMMDLQQELGLSYVFISHDLSVVEhIADEVMVMYLGRCVEKGTKEQI 242
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
3-212 |
2.70e-18 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 80.11 E-value: 2.70e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDVKALRRTVGFVFANPAAQMVMpTVREDV 81
Cdd:cd03265 16 VRGVSFRVRRGEIfGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDEL-TGWENL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 82 ELTVKsLRDDAGRRLAKddvaaRVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRR 161
Cdd:cd03265 95 YIHAR-LYGVPGAERRE-----RIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRA 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2158298083 162 IVADRLlaADPSAPDGFQLLLVTHDLELARA-CDEAVWIHGGHVERTGPAED 212
Cdd:cd03265 169 HVWEYI--EKLKEEFGMTILLTTHYMEEAEQlCDRVAIIDHGRIIAEGTPEE 218
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
2-213 |
4.22e-18 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 80.06 E-value: 4.22e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD-AVRDVKALRRTVGFVfanpAAQMVMP---T 76
Cdd:PRK11231 17 ILNDLSLSLPTGKItALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPiSMLSSRQLARRLALL----PQHHLTPegiT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 77 VREDVELtvkslrddaGR--------RLAkDDVAARVAAALEEHRLTALADRACLSLSSGQAQR--LAMcsVMTAGPSLV 146
Cdd:PRK11231 93 VRELVAY---------GRspwlslwgRLS-AEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRafLAM--VLAQDTPVV 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 147 IADEPTSLLDGRHRRIVAD--RLLAAdpsapDGFQLLLVTHDLELA-RACDEAVWIHGGHVERTGPAEDV 213
Cdd:PRK11231 161 LLDEPTTYLDINHQVELMRlmRELNT-----QGKTVVTVLHDLNQAsRYCDHLVVLANGHVMAQGTPEEV 225
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
3-209 |
4.81e-18 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 80.12 E-value: 4.81e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD----AVRDVKALRRTVGFVFAN-PAAQMVMPT 76
Cdd:PRK10419 28 LNNVSLSLKSGEtVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPlaklNRAQRKAFRRDIQMVFQDsISAVNPRKT 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 77 VREDVELTVKSLRD-DAGRRLAKDDVAARVAAALEEHrltalADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLL 155
Cdd:PRK10419 108 VREIIREPLRHLLSlDKAERLARASEMLRAVDLDDSV-----LDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNL 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2158298083 156 DgRHRRIVADRLLaADPSAPDGFQLLLVTHDLELA-RACDEAVWIHGGHVERTGP 209
Cdd:PRK10419 183 D-LVLQAGVIRLL-KKLQQQFGTACLFITHDLRLVeRFCQRVMVMDNGQIVETQP 235
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
3-221 |
6.98e-18 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 79.36 E-value: 6.98e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTA-PRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHG-VDAVRDVkalrrTVGFvfaNPAAqmvmpTVRED 80
Cdd:COG1134 42 LKDVSFEVERgESVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVNGrVSALLEL-----GAGF---HPEL-----TGREN 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 81 VELT----------VKSLRDD----AGrrlakddvaarvaaaLEEHrltalADRACLSLSSGQAQRLAMcSVMTA-GPSL 145
Cdd:COG1134 109 IYLNgrllglsrkeIDEKFDEivefAE---------------LGDF-----IDQPVKTYSSGMRARLAF-AVATAvDPDI 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2158298083 146 VIADEPTSLLDGRHRRIVADRL--LAADPSApdgfqLLLVTHDLELARA-CDEAVWIHGGHVERTGPAEDVVEAYERFL 221
Cdd:COG1134 168 LLVDEVLAVGDAAFQKKCLARIreLRESGRT-----VIFVSHSMGAVRRlCDRAIWLEKGRLVMDGDPEEVIAAYEALL 241
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
2-213 |
1.50e-17 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 78.59 E-value: 1.50e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTA-PRVAVIGENGSGKSTLARAIAG-LADVVAGEVSVHGVDAVR-DVKALRRTVGFVfaNPAAQMVMP--- 75
Cdd:COG1119 18 ILDDISWTVKPgEHWAILGPNGAGKSTLLSLITGdLPPTYGNDVRLFGERRGGeDVWELRKRIGLV--SPALQLRFPrde 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 76 TVReDVELT--VKSLR-----DDAGRRLAKddvaarvaAALEEHRLTALADRACLSLSSGQAQRL----AMcsvMTaGPS 144
Cdd:COG1119 96 TVL-DVVLSgfFDSIGlyrepTDEQRERAR--------ELLELLGLAHLADRPFGTLSQGEQRRVliarAL---VK-DPE 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2158298083 145 LVIADEPTSLLDGRHRRIVADRL--LAADPSApdgfQLLLVTHDLELARAC-DEAVWIHGGHVERTGPAEDV 213
Cdd:COG1119 163 LLILDEPTAGLDLGARELLLALLdkLAAEGAP----TLVLVTHHVEEIPPGiTHVLLLKDGRVVAAGPKEEV 230
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
3-213 |
1.61e-17 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 77.86 E-value: 1.61e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLtaPR---VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD--AVRDVKALRRTVGFVfanPAAQMVMP-- 75
Cdd:cd03224 16 LFGVSLTV--PEgeiVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDitGLPPHERARAGIGYV---PEGRRIFPel 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 76 TVREDVELTVKSLRDDAGRRlakddvaarvaaALEE-----HRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADE 150
Cdd:cd03224 91 TVEENLLLGAYARRRAKRKA------------RLERvyelfPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2158298083 151 PTSLLDGRHRRIVADRL--LAAdpsapDGFQLLLVTHDLELARA-CDEAVWIHGGHVERTGPAEDV 213
Cdd:cd03224 159 PSEGLAPKIVEEIFEAIreLRD-----EGVTILLVEQNARFALEiADRAYVLERGRVVLEGTAAEL 219
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-213 |
1.64e-17 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 78.42 E-value: 1.64e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLtAPRV--AVIGENGSGKSTLARAIAGLADV-----VAGEVSVHGVDAVR-DVKALRRTVGFVFA--NPAAQ 71
Cdd:PRK14247 18 VLDGVNLEI-PDNTitALMGPSGSGKSTLLRVFNRLIELypearVSGEVYLDGQDIFKmDVIELRRRVQMVFQipNPIPN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 72 MvmpTVREDVELTVKSLRDDAGRR--LAKDDVAARVAAALEE--HRLTALADRaclsLSSGQAQRLAMCSVMTAGPSLVI 147
Cdd:PRK14247 97 L---SIFENVALGLKLNRLVKSKKelQERVRWALEKAQLWDEvkDRLDAPAGK----LSGGQQQRLCIARALAFQPEVLL 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2158298083 148 ADEPTSLLDGRHRRIVADRLLAADPSapdgFQLLLVTH-DLELARACDEAVWIHGGHVERTGPAEDV 213
Cdd:PRK14247 170 ADEPTANLDPENTAKIESLFLELKKD----MTIVLVTHfPQQAARISDYVAFLYKGQIVEWGPTREV 232
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
3-211 |
2.13e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 78.67 E-value: 2.13e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAV-----RDVKALRRTVGFVFANPAAQMVMPT 76
Cdd:PRK13646 23 IHDVNTEFEQGKYyAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITIThktkdKYIRPVRKRIGMVFQFPESQLFEDT 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 77 VREDVE-------LTVKSLRDDAGRRLakddvaarvaaaLEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIAD 149
Cdd:PRK13646 103 VEREIIfgpknfkMNLDEVKNYAHRLL------------MDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLD 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2158298083 150 EPTSLLDGRHRRIVADrlLAADPSAPDGFQLLLVTHDL-ELARACDEAVWIHGGH-VERTGPAE 211
Cdd:PRK13646 171 EPTAGLDPQSKRQVMR--LLKSLQTDENKTIILVSHDMnEVARYADEVIVMKEGSiVSQTSPKE 232
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
3-213 |
2.16e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 78.58 E-value: 2.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLT-APRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDVKAL---RRTVGFVFANPAAQMVMPTVR 78
Cdd:PRK13639 18 LKGINFKAEkGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLlevRKTVGIVFQNPDDQLFAPTVE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 79 EDVE---LTVKSLRDDAGRRLAKddvaarvaaALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLL 155
Cdd:PRK13639 98 EDVAfgpLNLGLSKEEVEKRVKE---------ALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGL 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2158298083 156 DGRHRRIVADRLLAADpsaPDGFQLLLVTHDLELARACDEAVW-IHGGHVERTGPAEDV 213
Cdd:PRK13639 169 DPMGASQIMKLLYDLN---KEGITIIISTHDVDLVPVYADKVYvMSDGKIIKEGTPKEV 224
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
3-216 |
3.06e-17 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 79.73 E-value: 3.06e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADvVAGEVSVHGVDAV----RDVKALRRTVGFVFANPAA----QMv 73
Cdd:COG4172 302 VDGVSLTLRRGEtLGLVGESGSGKSTLGLALLRLIP-SEGEIRFDGQDLDglsrRALRPLRRRMQVVFQDPFGslspRM- 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 74 mpTVREDVE--LTVKSLRDDAGRRLAKddvaarVAAALEEHRLT-ALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADE 150
Cdd:COG4172 380 --TVGQIIAegLRVHGPGLSAAERRAR------VAEALEEVGLDpAARHRYPHEFSGGQRQRIAIARALILEPKLLVLDE 451
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2158298083 151 PTSLLDgrhRRIVADRL-LAADPSAPDGFQLLLVTHDLELARA-CDEAVWIHGGHVERTGPAEDVVEA 216
Cdd:COG4172 452 PTSALD---VSVQAQILdLLRDLQREHGLAYLFISHDLAVVRAlAHRVMVMKDGKVVEQGPTEQVFDA 516
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
6-213 |
3.08e-17 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 78.99 E-value: 3.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 6 VDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHG---VDAVR--DVKALRRTVGFVFANPAaqmVMPtvre 79
Cdd:COG4148 18 VDFTLPGRGVtALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGevlQDSARgiFLPPHRRRIGYVFQEAR---LFP---- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 80 dvELTVKSLRDDAGRRLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRH 159
Cdd:COG4148 91 --HLSVRGNLLYGRKRAPRAERRISFDEVVELLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLAR 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2158298083 160 RRIVADRL--LAADPSAPdgfqLLLVTHDL-ELARACDEAVWIHGGHVERTGPAEDV 213
Cdd:COG4148 169 KAEILPYLerLRDELDIP----ILYVSHSLdEVARLADHVVLLEQGRVVASGPLAEV 221
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
3-204 |
5.27e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 77.95 E-value: 5.27e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAV-----RDVKALRRTVGFVFANPAAQMVMPT 76
Cdd:PRK13641 23 LDNISFELEEGSfVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITpetgnKNLKKLRKKVSLVFQFPEAQLFENT 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 77 VREDVELTVKSL--RDDAGRRLAKDDVAARVAAaleehrlTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSL 154
Cdd:PRK13641 103 VLKDVEFGPKNFgfSEDEAKEKALKWLKKVGLS-------EDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAG 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2158298083 155 LDGRHRRIVADRLLAADPSapdGFQLLLVTHDL-ELARACDEAVWIHGGHV 204
Cdd:PRK13641 176 LDPEGRKEMMQLFKDYQKA---GHTVILVTHNMdDVAEYADDVLVLEHGKL 223
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
2-204 |
6.24e-17 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 75.33 E-value: 6.24e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVR-DVKALRRTVGFVfanpaAQmvmptvre 79
Cdd:cd03246 17 VLRNVSFSIEPGEsLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQwDPNELGDHVGYL-----PQ-------- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 80 DVELTVKSLRDDAgrrlakddvaarvaaaleehrltaladraclsLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRH 159
Cdd:cd03246 84 DDELFSGSIAENI--------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEG 131
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2158298083 160 RRIVADRLLAADPSapdGFQLLLVTHDLELARACDEAVWIHGGHV 204
Cdd:cd03246 132 ERALNQAIAALKAA---GATRIVIAHRPETLASADRILVLEDGRV 173
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
3-215 |
6.28e-17 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 76.51 E-value: 6.28e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDaVRDVKALRRTVGFVFANPAaqmVMP--TVRE 79
Cdd:cd03300 16 LDGVSLDIKEGEfFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKD-ITNLPPHKRPVNTVFQNYA---LFPhlTVFE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 80 DVE--LTVKSL-RDDAGRRLAKDdvaarvaaaLEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLD 156
Cdd:cd03300 92 NIAfgLRLKKLpKAEIKERVAEA---------LDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2158298083 157 GRHR-------RIVADRLlaadpsapdGFQLLLVTHDLELARA-CDEAVWIHGGHVERTGPAEDVVE 215
Cdd:cd03300 163 LKLRkdmqlelKRLQKEL---------GITFVFVTHDQEEALTmSDRIAVMNKGKIQQIGTPEEIYE 220
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
16-226 |
7.50e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 77.47 E-value: 7.50e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 16 AVIGENGSGKSTLARAIAGL-----ADVVAGEVSVHGVDAVRDVKALRRTVGFVFANPAAQMVMPTVREDVELTVKSLrd 90
Cdd:PRK13643 36 ALIGHTGSGKSTLLQHLNGLlqpteGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNF-- 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 91 dagrRLAKDDVAARVAAALEEHRLTA-LADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRrivADRLLA 169
Cdd:PRK13643 114 ----GIPKEKAEKIAAEKLEMVGLADeFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKAR---IEMMQL 186
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2158298083 170 ADPSAPDGFQLLLVTHDL-ELARACDEAVWIHGGHVERTGPAEDVVEAYERFLDHAVA 226
Cdd:PRK13643 187 FESIHQSGQTVVLVTHLMdDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELG 244
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
2-197 |
7.89e-17 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 75.35 E-value: 7.89e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHGvdavrdvkalRRTVGFVFANPAAQMVMP-TVRE 79
Cdd:NF040873 7 VLHGVDLTIPAGSLtAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAG----------GARVAYVPQRSEVPDSLPlTVRD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 80 DVELTVKSlRDDAGRRLAKdDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRH 159
Cdd:NF040873 77 LVAMGRWA-RRGLWRRLTR-DDRAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTGLDAES 154
|
170 180 190
....*....|....*....|....*....|....*...
gi 2158298083 160 RRIVADRLLAAdpsAPDGFQLLLVTHDLELARACDEAV 197
Cdd:NF040873 155 RERIIALLAEE---HARGATVVVVTHDLELVRRADPCV 189
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
3-216 |
1.81e-16 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 75.34 E-value: 1.81e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDaVRDVKA--LRRTVGFVfanpaAQMVM---PT 76
Cdd:cd03251 18 LRDISLDIPAGEtVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHD-VRDYTLasLRRQIGLV-----SQDVFlfnDT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 77 VREDVELTVKSLRDDAGRRLAKDDVAARVAAALEEHRLTALADRAcLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLD 156
Cdd:cd03251 92 VAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERG-VKLSGGQRQRIAIARALLKDPPILILDEATSALD 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2158298083 157 GRHRRIVADRL--LAADPSApdgfqlLLVTHDLELARACDEAVWIHGGHVERTGPAEDVVEA 216
Cdd:cd03251 171 TESERLVQAALerLMKNRTT------FVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
3-216 |
2.13e-16 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 77.51 E-value: 2.13e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLtAP--RVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDaVRDV--KALRRTVGFVFANPaaQMVMPTVR 78
Cdd:COG1132 356 LKDISLTI-PPgeTVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVD-IRDLtlESLRRQIGVVPQDT--FLFSGTIR 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 79 EDVELTVKSLRDDAGRRLAKDDVAARVAAALEEHRLTALADRAcLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGR 158
Cdd:COG1132 432 ENIRYGRPDATDEEVEEAAKAAQAHEFIEALPDGYDTVVGERG-VNLSGGQRQRIAIARALLKDPPILILDEATSALDTE 510
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 159 HRRIVADRL--LAADPSApdgfqlLLVTHDLELARACDEAVWIHGGHVERTGPAEDVVEA 216
Cdd:COG1132 511 TEALIQEALerLMKGRTT------IVIAHRLSTIRNADRILVLDDGRIVEQGTHEELLAR 564
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
3-213 |
2.14e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 75.94 E-value: 2.14e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLT-LTAPRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAV-----RDVKALRRTVGFVFANPAAQMVMPT 76
Cdd:PRK13649 23 LFDVNLTiEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITstsknKDIKQIRKKVGLVFQFPESQLFEET 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 77 VREDVELTVKS--LRDDAGRRLAKddvaarvaaalEEHRLTALA----DRACLSLSSGQAQRLAMCSVMTAGPSLVIADE 150
Cdd:PRK13649 103 VLKDVAFGPQNfgVSQEEAEALAR-----------EKLALVGISeslfEKNPFELSGGQMRRVAIAGILAMEPKILVLDE 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2158298083 151 PTSLLDGRHRRIVADRLLAADPSapdGFQLLLVTHDL-ELARACDEAVWIHGGHVERTGPAEDV 213
Cdd:PRK13649 172 PTAGLDPKGRKELMTLFKKLHQS---GMTIVLVTHLMdDVANYADFVYVLEKGKLVLSGKPKDI 232
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-203 |
3.77e-16 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 76.02 E-value: 3.77e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDVKALRRTVGFV--FANPaaqmvmptvr 78
Cdd:PRK13536 56 VVNGLSFTVASGECfGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVpqFDNL---------- 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 79 eDVELTVKSLRDDAGR--RLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLD 156
Cdd:PRK13536 126 -DLEFTVRENLLVFGRyfGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLD 204
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2158298083 157 GRHRRIVADRLLAAdpsAPDGFQLLLVTHDLELA-RACDEAVWIHGGH 203
Cdd:PRK13536 205 PHARHLIWERLRSL---LARGKTILLTTHFMEEAeRLCDRLCVLEAGR 249
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
2-213 |
3.83e-16 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 75.01 E-value: 3.83e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHG--VDAVRD------------VKALRRTVGFVFA 66
Cdd:PRK10619 20 VLKGVSLQANAGDViSIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGqtINLVRDkdgqlkvadknqLRLLRTRLTMVFQ 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 67 N-------PAAQMVMPTVREDVELTVKSLRDDAGRRLAKDDVAARVAAALEEHrltaladraclsLSSGQAQRLAMCSVM 139
Cdd:PRK10619 100 HfnlwshmTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVH------------LSGGQQQRVSIARAL 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2158298083 140 TAGPSLVIADEPTSLLDgrhRRIVADRLLAADPSAPDGFQLLLVTHDLELAR-ACDEAVWIHGGHVERTGPAEDV 213
Cdd:PRK10619 168 AMEPEVLLFDEPTSALD---PELVGEVLRIMQQLAEEGKTMVVVTHEMGFARhVSSHVIFLHQGKIEEEGAPEQL 239
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
3-214 |
5.13e-16 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 74.01 E-value: 5.13e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTA-PRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD--AVRDVKALRRTVGFVFANPA--AQMvmpTV 77
Cdd:cd03219 16 LDDVSFSVRPgEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDitGLPPHEIARLGIGRTFQIPRlfPEL---TV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 78 REDVELTV----KSLRDDAGRRLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTS 153
Cdd:cd03219 93 LENVMVAAqartGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAA 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2158298083 154 LLDGRHRRIVADRLLAAdpsAPDGFQLLLVTHDLELARA-CDEAVWIHGGHVERTGPAEDVV 214
Cdd:cd03219 173 GLNPEETEELAELIREL---RERGITVLLVEHDMDVVMSlADRVTVLDQGRVIAEGTPDEVR 231
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
7-215 |
5.15e-16 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 74.18 E-value: 5.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 7 DLTLTAPR---VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDaVRDV--KALRRTVGFVFANPaaqMVMP-TVRED 80
Cdd:cd03254 21 DINFSIKPgetVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGID-IRDIsrKSLRSMIGVVLQDT---FLFSgTIMEN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 81 VELTVKSLRDDAGRRLAKDDVAARVAAALEEHRLTALADRACLsLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHR 160
Cdd:cd03254 97 IRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGN-LSQGERQLLAIARAMLRDPKILILDEATSNIDTETE 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2158298083 161 RIVADRLLaadpSAPDGFQLLLVTHDLELARACDEAVWIHGGHVERTGPAEDVVE 215
Cdd:cd03254 176 KLIQEALE----KLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
2-210 |
5.65e-16 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 74.40 E-value: 5.65e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHGV--DAVRD-------VKALRRTVGFVFAN---- 67
Cdd:PRK11264 18 VLHGIDLEVKPGEVvAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDItiDTARSlsqqkglIRQLRQHVGFVFQNfnlf 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 68 PAaQMVMPTVREDVELTVKSLRDDA---GRRLakddvaarvaaaLEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPS 144
Cdd:PRK11264 98 PH-RTVLENIIEGPVIVKGEPKEEAtarAREL------------LAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPE 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2158298083 145 LVIADEPTSLLDgrhRRIVADRLLAADPSAPDGFQLLLVTHDLELAR-ACDEAVWIHGGHVERTGPA 210
Cdd:PRK11264 165 VILFDEPTSALD---PELVGEVLNTIRQLAQEKRTMVIVTHEMSFARdVADRAIFMDQGRIVEQGPA 228
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
3-225 |
5.75e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 75.27 E-value: 5.75e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSV-----------------HGVDAVRDVKALRRTVGFV 64
Cdd:PRK13631 42 LNNISYTFEKNKIyFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVgdiyigdkknnhelitnPYSKKIKNFKELRRRVSMV 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 65 FANPAAQMVMPTVRED-----VELTVKSLRddaGRRLAKddvAARVAAALEEHRLtalaDRACLSLSSGQAQRLAMCSVM 139
Cdd:PRK13631 122 FQFPEYQLFKDTIEKDimfgpVALGVKKSE---AKKLAK---FYLNKMGLDDSYL----ERSPFGLSGGQKRRVAIAGIL 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 140 TAGPSLVIADEPTSLLDGRHRRIVADRLLAADPSapdGFQLLLVTHDLE-LARACDEAVWIHGGHVERTGpaedvvEAYE 218
Cdd:PRK13631 192 AIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN---NKTVFVITHTMEhVLEVADEVIVMDKGKILKTG------TPYE 262
|
....*..
gi 2158298083 219 RFLDHAV 225
Cdd:PRK13631 263 IFTDQHI 269
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
3-219 |
6.43e-16 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 75.49 E-value: 6.43e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLtAPR--VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDaVRDVKALRRTVGFVFANPAaqmVMP--TVR 78
Cdd:COG3839 19 LKDIDLDI-EDGefLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRD-VTDLPPKDRNIAMVFQSYA---LYPhmTVY 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 79 EDVELtvkSLRddaGRRLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGR 158
Cdd:COG3839 94 ENIAF---PLK---LRKVPKAEIDRRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVREPKVFLLDEPLSNLDAK 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2158298083 159 ------------HRRIvadrllaadpsapdGFQLLLVTHDLE----LAracDEAVWIHGGHVERTGPAEDVveaYER 219
Cdd:COG3839 168 lrvemraeikrlHRRL--------------GTTTIYVTHDQVeamtLA---DRIAVMNDGRIQQVGTPEEL---YDR 224
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
3-202 |
1.20e-15 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 73.01 E-value: 1.20e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTA-PRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVR-DVKALRRTVGFVFANPaaQMVMPTVRED 80
Cdd:cd03245 20 LDNVSLTIRAgEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQlDPADLRRNIGYVPQDV--TLFYGTLRDN 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 81 VELTVKSLRDDAGRRLAKDDVAARVAAALEEHRLTALADRAClSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHR 160
Cdd:cd03245 98 ITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGR-GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSE 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2158298083 161 RIVADRL--LAADPSapdgfqLLLVTHDLELARACDEAVWIHGG 202
Cdd:cd03245 177 ERLKERLrqLLGDKT------LIIITHRPSLLDLVDRIIVMDSG 214
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
3-215 |
1.27e-15 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 75.22 E-value: 1.27e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDVKALR--------RTVGFVFANPAA--- 70
Cdd:TIGR03269 300 VDNVSLEVKEGEIfGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGpdgrgrakRYIGILHQEYDLyph 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 71 QMVMPTVREDVELtvkSLRDDAGRRLAkddVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADE 150
Cdd:TIGR03269 380 RTVLDNLTEAIGL---ELPDELARMKA---VITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDE 453
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2158298083 151 PTSLLDGRHRRIVADRLLAADPSAPDGFqlLLVTHDLELAR-ACDEAVWIHGGHVERTGPAEDVVE 215
Cdd:TIGR03269 454 PTGTMDPITKVDVTHSILKAREEMEQTF--IIVSHDMDFVLdVCDRAALMRDGKIVKIGDPEEIVE 517
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
3-187 |
1.43e-15 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 75.09 E-value: 1.43e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTA-PRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVR-DVKALRRTVGFVfaNPAAQMVMPTVRED 80
Cdd:TIGR02868 351 LDGVSLDLPPgERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSlDQDEVRRRVSVC--AQDAHLFDTTVREN 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 81 VELTVKSLRDDAGRRLAKDDVAARVAAALEEHRLTALADRAClSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRhr 160
Cdd:TIGR02868 429 LRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGA-RLSGGERQRLALARALLADAPILLLDEPTEHLDAE-- 505
|
170 180
....*....|....*....|....*..
gi 2158298083 161 riVADRLLAADPSAPDGFQLLLVTHDL 187
Cdd:TIGR02868 506 --TADELLEDLLAALSGRTVVLITHHL 530
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
2-216 |
1.97e-15 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 74.49 E-value: 1.97e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLT-APRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD-AVRDVKALRRTVGFVFANPAAQMVMpTVRE 79
Cdd:PRK09536 18 VLDGVDLSVReGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDvEALSARAASRRVASVPQDTSLSFEF-DVRQ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 80 DVE------LTVKSLRDDAGRRLAKddvaarvaAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTS 153
Cdd:PRK09536 97 VVEmgrtphRSRFDTWTETDRAAVE--------RAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTA 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2158298083 154 LLDGRHrrivADRLLA-ADPSAPDGFQLLLVTHDLEL-ARACDEAVWIHGGHVERTGPAEDVVEA 216
Cdd:PRK09536 169 SLDINH----QVRTLElVRRLVDDGKTAVAAIHDLDLaARYCDELVLLADGRVRAAGPPADVLTA 229
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
3-204 |
2.48e-15 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 72.02 E-value: 2.48e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDVKALRRTVGFVFANPAAQMVMpTVREDV 81
Cdd:cd03266 21 VDGVSFTVKPGEVtGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRL-TARENL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 82 EL-----TVKslRDDAGRRLAKDDvaarvaaalEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLD 156
Cdd:cd03266 100 EYfaglyGLK--GDELTARLEELA---------DRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLD 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2158298083 157 GRHRRIVAD---RLLAAdpsapdGFQLLLVTHDL-ELARACDEAVWIHGGHV 204
Cdd:cd03266 169 VMATRALREfirQLRAL------GKCILFSTHIMqEVERLCDRVVVLHRGRV 214
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
1-211 |
3.00e-15 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 72.26 E-value: 3.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 1 MLLDGVDLTLTA-PRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDaVRDVK--ALRRTVGFV------FANpaaq 71
Cdd:cd03253 15 PVLKDVSFTIPAgKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQD-IREVTldSLRRAIGVVpqdtvlFND---- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 72 mvmpTVREDVELTVKSLRDDAGRRLAKDDVAARVAAALEEHRLTALADRAcLSLSSGQAQRLAMCSVMTAGPSLVIADEP 151
Cdd:cd03253 90 ----TIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERG-LKLSGGEKQRVAIARAILKNPPILLLDEA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2158298083 152 TSLLDGRHRRIVADRLLaadpSAPDGFQLLLVTHDLELARACDEAVWIHGGHV-ERTGPAE 211
Cdd:cd03253 165 TSALDTHTEREIQAALR----DVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIvERGTHEE 221
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
7-223 |
3.32e-15 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 71.97 E-value: 3.32e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 7 DLTLTAPR---VAVIGENGSGKSTLARAIAGLADVVAGEVSV--HGVD-----AVRDVKALRRTVGFVFA--NPAAQMvm 74
Cdd:PRK11124 20 DITLDCPQgetLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIagNHFDfsktpSDKAIRELRRNVGMVFQqyNLWPHL-- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 75 pTVRED-VELTVKSLRddagrrLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTS 153
Cdd:PRK11124 98 -TVQQNlIEAPCRVLG------LSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTA 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2158298083 154 LLDgrhRRIVADRLLAADPSAPDGFQLLLVTHDLELAR-ACDEAVWIHGGHVERTGPAEDVV----EAYERFLDH 223
Cdd:PRK11124 171 ALD---PEITAQIVSIIRELAETGITQVIVTHEVEVARkTASRVVYMENGHIVEQGDASCFTqpqtEAFKNYLSH 242
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
3-204 |
3.42e-15 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 70.54 E-value: 3.42e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHG--VDAVRDVKALRRTVGFVFanpaaQmvmptvre 79
Cdd:cd03216 16 LDGVSLSVRRGEVhALLGENGAGKSTLMKILSGLYKPDSGEILVDGkeVSFASPRDARRAGIAMVY-----Q-------- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 80 dveltvkslrddagrrlakddvaarvaaaleehrltaladraclsLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRH 159
Cdd:cd03216 83 ---------------------------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAE 117
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2158298083 160 RRIVAD--RLLAAdpsapDGFQLLLVTHDL-ELARACDEAVWIHGGHV 204
Cdd:cd03216 118 VERLFKviRRLRA-----QGVAVIFISHRLdEVFEIADRVTVLRDGRV 160
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
3-213 |
4.04e-15 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 71.93 E-value: 4.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLtaPR---VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAV----RDVKALRRTVGFVFANPA--AQMv 73
Cdd:COG1127 21 LDGVSLDV--PRgeiLAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITglseKELYELRRRIGMLFQGGAlfDSL- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 74 mpTVREDVELtvkSLRddAGRRLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTS 153
Cdd:COG1127 98 --TVFENVAF---PLR--EHTDLSEAEIRELVLEKLELVGLPGAADKMPSELSGGMRKRVALARALALDPEILLYDEPTA 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2158298083 154 LLDgRHRRIVADRLLAadpSAPDGFQL--LLVTHDLELARA-CDEAVWIHGGHVERTGPAEDV 213
Cdd:COG1127 171 GLD-PITSAVIDELIR---ELRDELGLtsVVVTHDLDSAFAiADRVAVLADGKIIAEGTPEEL 229
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
7-208 |
4.79e-15 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 73.60 E-value: 4.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 7 DLTLT-AP--RVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVR-DVKALRRTVGFVFANPaaQMVMPTVREDVE 82
Cdd:TIGR00958 499 GLTFTlHPgeVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQyDHHYLHRQVALVGQEP--VLFSGSVRENIA 576
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 83 LTVKSLRDDAGRRLAKDDVAARVAAALEEHRLTALADRACLsLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRhrri 162
Cdd:TIGR00958 577 YGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQ-LSGGQKQRIAIARALVRKPRVLILDEATSALDAE---- 651
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2158298083 163 vADRLLAADPSAPDgFQLLLVTHDLELARACDEAVWIHGGHVERTG 208
Cdd:TIGR00958 652 -CEQLLQESRSRAS-RTVLLIAHRLSTVERADQILVLKKGSVVEMG 695
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
3-208 |
4.83e-15 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 71.13 E-value: 4.83e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRVAVI-GENGSGKSTLARAIAGLADVVAGEVSVHGVDaVRDVKALRRTVGFVFANPAAQMVMpTVREDV 81
Cdd:cd03301 16 LDDLNLDIADGEFVVLlGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRD-VTDLPPKDRDIAMVFQNYALYPHM-TVYDNI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 82 ELTVKSlrddagRRLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHR- 160
Cdd:cd03301 94 AFGLKL------RKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRv 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2158298083 161 --RIVADRLLAAdpsapDGFQLLLVTHDLELARA-CDEAVWIHGGHVERTG 208
Cdd:cd03301 168 qmRAELKRLQQR-----LGTTTIYVTHDQVEAMTmADRIAVMNDGQIQQIG 213
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
3-213 |
6.10e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 72.19 E-value: 6.10e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHG--VDAVRD-VKALRRTVGFVFANPAAQMVMPTVR 78
Cdd:PRK13636 22 LKGININIKKGEVtAILGGNGAGKSTLFQNLNGILKPSSGRILFDGkpIDYSRKgLMKLRESVGMVFQDPDNQLFSASVY 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 79 EDVELTVKSLRddagrrLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGR 158
Cdd:PRK13636 102 QDVSFGAVNLK------LPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPM 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2158298083 159 HRRIVADRLLAADPSApdGFQLLLVTHDLEL-ARACDEAVWIHGGHVERTGPAEDV 213
Cdd:PRK13636 176 GVSEIMKLLVEMQKEL--GLTIIIATHDIDIvPLYCDNVFVMKEGRVILQGNPKEV 229
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
3-190 |
6.96e-15 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 71.35 E-value: 6.96e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADV-----VAGEVSVHGVDAVR---DVKALRRTVGFVFANPAAqmv 73
Cdd:PRK14239 21 LNSVSLDFYPNEItALIGPSGSGKSTLLRSINRMNDLnpevtITGSIVYNGHNIYSprtDTVDLRKEIGMVFQQPNP--- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 74 MP-TVREDV--ELTVKSLRDDAgrRLAKDDVAARVAAALEEHRLTALADRAcLSLSSGQAQRLAMCSVMTAGPSLVIADE 150
Cdd:PRK14239 98 FPmSIYENVvyGLRLKGIKDKQ--VLDEAVEKSLKGASIWDEVKDRLHDSA-LGLSGGQQQRVCIARVLATSPKIILLDE 174
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2158298083 151 PTSLLDGRHRRIVADRLLAADpsapDGFQLLLVTHDLELA 190
Cdd:PRK14239 175 PTSALDPISAGKIEETLLGLK----DDYTMLLVTRSMQQA 210
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
3-202 |
2.21e-14 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 69.17 E-value: 2.21e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTL-TAPRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDVKALRRtVGFVFANPAAQMVMpTVREDV 81
Cdd:cd03268 16 LDDISLHVkKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRR-IGALIEAPGFYPNL-TARENL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 82 EL--TVKSLRDDAGRRLakddvaarvaaaLEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLD--G 157
Cdd:cd03268 94 RLlaRLLGIRKKRIDEV------------LDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDpdG 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2158298083 158 RH--RRIVadRLLAAdpsapDGFQLLLVTHDL-ELARACDEAVWIHGG 202
Cdd:cd03268 162 IKelRELI--LSLRD-----QGITVLISSHLLsEIQKVADRIGIINKG 202
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
7-230 |
2.71e-14 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 69.40 E-value: 2.71e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 7 DLTLTA-PRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDaVRDVKALRRTVGFVFA--NPAAQMvmpTVREDVEL 83
Cdd:COG3840 19 DLTIAAgERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQD-LTALPPAERPVSMLFQenNLFPHL---TVAQNIGL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 84 TVK-SLRDDAGRRlakddvaARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRI 162
Cdd:COG3840 95 GLRpGLKLTAEQR-------AQVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEPFSALDPALRQE 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2158298083 163 VADrlLAADPSAPDGFQLLLVTHDLELA-RACDEAVWIHGGHVERTGPAEDvveayerFLDHAVAAELR 230
Cdd:COG3840 168 MLD--LVDELCRERGLTVLMVTHDPEDAaRIADRVLLVADGRIAADGPTAA-------LLDGEPPPALA 227
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
1-215 |
2.71e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 69.87 E-value: 2.71e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 1 MLLDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADV-----VAGEVSVHGVDAVR-DVKAL--RRTVGFVFA--NPA 69
Cdd:PRK14267 18 HVIKGVDLKIPQNGVfALMGPSGCGKSTLLRTFNRLLELneearVEGEVRLFGRNIYSpDVDPIevRREVGMVFQypNPF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 70 AQMvmpTVREDVELTVKSLRDDAGRR-LAKDDVAARVAAALEEHRLTALADRAClSLSSGQAQRLAMCSVMTAGPSLVIA 148
Cdd:PRK14267 98 PHL---TIYDNVAIGVKLNGLVKSKKeLDERVEWALKKAALWDEVKDRLNDYPS-NLSGGQRQRLVIARALAMKPKILLM 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2158298083 149 DEPTSLLDGRHRRIVADRLLaadpSAPDGFQLLLVTHD-LELARACDEAVWIHGGHVERTGPAEDVVE 215
Cdd:PRK14267 174 DEPTANIDPVGTAKIEELLF----ELKKEYTIVLVTHSpAQAARVSDYVAFLYLGKLIEVGPTRKVFE 237
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
3-215 |
4.36e-14 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 70.36 E-value: 4.36e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLT------LTaprvaVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDaVRDVKALRRTVGFVFANPAAQMVMpT 76
Cdd:PRK09452 30 ISNLDLTinngefLT-----LLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQD-ITHVPAENRHVNTVFQSYALFPHM-T 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 77 VREDVELtvkslrddaGRRLAKDDVAARVAAALEEHR---LTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTS 153
Cdd:PRK09452 103 VFENVAF---------GLRMQKTPAAEITPRVMEALRmvqLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLS 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2158298083 154 LLDGRHRRIVADRLLAADPSApdGFQLLLVTHDLELARA-CDEAVWIHGGHVERTGPAEDVVE 215
Cdd:PRK09452 174 ALDYKLRKQMQNELKALQRKL--GITFVFVTHDQEEALTmSDRIVVMRDGRIEQDGTPREIYE 234
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
15-215 |
9.19e-14 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 68.13 E-value: 9.19e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 15 VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDaVRDVKALRRTVGFVFANPAaqmVMP--TVREDVELTVKSLRDDa 92
Cdd:cd03299 28 FVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKD-ITNLPPEKRDISYVPQNYA---LFPhmTVYKNIAYGLKKRKVD- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 93 grrlaKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRIVadRLLAADP 172
Cdd:cd03299 103 -----KKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKL--REELKKI 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2158298083 173 SAPDGFQLLLVTHDLELARA-CDEAVWIHGGHVERTGPAEDVVE 215
Cdd:cd03299 176 RKEFGVTVLHVTHDFEEAWAlADKVAIMLNGKLIQVGKPEEVFK 219
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
15-216 |
1.40e-13 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 67.51 E-value: 1.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 15 VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD-AVRDVKALRRTVGFVFANPAaqMVMPTVREDVELTVKSLRDDAG 93
Cdd:cd03252 31 VGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDlALADPAWLRRQVGVVLQENV--LFNRSIRDNIALADPGMSMERV 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 94 RRLAKDDVAARVAAALEEHRLTALADRAcLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRIVADRLLAadps 173
Cdd:cd03252 109 IEAAKLAGAHDFISELPEGYDTIVGEQG-AGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHD---- 183
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2158298083 174 APDGFQLLLVTHDLELARACDEAVWIHGGHVERTGPAEDVVEA 216
Cdd:cd03252 184 ICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE 226
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
7-215 |
2.00e-13 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 67.33 E-value: 2.00e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 7 DLTLTAPR---VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVR-DVKALRRTVGFVFanpaaQMV--MP--TVR 78
Cdd:cd03295 19 NLNLEIAKgefLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREqDPVELRRKIGYVI-----QQIglFPhmTVE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 79 EDVELTVKSLRDDAGRRLAKDDVAARVAAALEEHrltaLADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGR 158
Cdd:cd03295 94 ENIALVPKLLKWPKEKIRERADELLALVGLDPAE----FADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPI 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2158298083 159 HRRIVADRLLAADPSApdGFQLLLVTHDLELA-RACDEAVWIHGGHVERTG--------PAEDVVE 215
Cdd:cd03295 170 TRDQLQEEFKRLQQEL--GKTIVFVTHDIDEAfRLADRIAIMKNGEIVQVGtpdeilrsPANDFVA 233
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
2-206 |
2.24e-13 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 68.55 E-value: 2.24e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAP-RVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGvdavrdvkalRRTVGFV----FANPAAqmvmpT 76
Cdd:COG0488 13 LLDDVSLSINPGdRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPK----------GLRIGYLpqepPLDDDL-----T 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 77 VREDVELTVKSLR------DDAGRRLAKDDVAARVAAALE-----------EHR----LTAL------ADRACLSLSSGQ 129
Cdd:COG0488 78 VLDTVLDGDAELRaleaelEELEAKLAEPDEDLERLAELQeefealggweaEARaeeiLSGLgfpeedLDRPVSELSGGW 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 130 AQRLAMCSVMTAGPSLVIADEPTSLLDgrhrrivAD------RLLAADPSApdgfqLLLVTHDLE-LARACDEAVWIHGG 202
Cdd:COG0488 158 RRRVALARALLSEPDLLLLDEPTNHLD-------LEsiewleEFLKNYPGT-----VLVVSHDRYfLDRVATRILELDRG 225
|
....
gi 2158298083 203 HVER 206
Cdd:COG0488 226 KLTL 229
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
17-224 |
3.29e-13 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 66.90 E-value: 3.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 17 VIGENGSGKSTLARAIAGLADVVAGEVSVHGVD----AVRDVKALRR-TVGFVFANPAaqmVMP--TVREDVELTVKSLR 89
Cdd:cd03294 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDiaamSRKELRELRRkKISMVFQSFA---LLPhrTVLENVAFGLEVQG 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 90 DDAGRRLAKddvaarVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRIVADRLLA 169
Cdd:cd03294 132 VPRAEREER------AAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLR 205
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2158298083 170 AdpSAPDGFQLLLVTHDLELA-RACDEAVWIHGGHVERTG--------PAEDVVEAYERFLDHA 224
Cdd:cd03294 206 L--QAELQKTIVFITHDLDEAlRLGDRIAIMKDGRLVQVGtpeeiltnPANDYVREFFRGVDRA 267
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
1-156 |
4.19e-13 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 65.59 E-value: 4.19e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 1 MLLDGVDLTLTAPRVAVI-GENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDVKALRRTVGFVFANPAAQMVMpTVRE 79
Cdd:cd03231 14 ALFSGLSFTLAAGEALQVtGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTL-SVLE 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2158298083 80 DVELtvksLRDDAGRrlakddvaARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLD 156
Cdd:cd03231 93 NLRF----WHADHSD--------EQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALD 157
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
15-156 |
4.64e-13 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 65.26 E-value: 4.64e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 15 VAVIGENGSGKSTLARAIAGLADV--VAGEVSVHGVDavRDVKALRRTVGFVfanPAAQMVMP--TVREDVELTVKsLRd 90
Cdd:cd03213 38 TAIMGPSGAGKSTLLNALAGRRTGlgVSGEVLINGRP--LDKRSFRKIIGYV---PQDDILHPtlTVRETLMFAAK-LR- 110
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2158298083 91 dagrrlakddvaarvaaaleehrltaladraclSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLD 156
Cdd:cd03213 111 ---------------------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
3-189 |
5.06e-13 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 65.51 E-value: 5.06e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAV----RDVKALRRTVGFVFANpaaQMVMP-- 75
Cdd:cd03292 17 LDGINISISAGEfVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSdlrgRAIPYLRRKIGVVFQD---FRLLPdr 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 76 TVREDVELTVKSLrdDAGRRLAKDDVAARVAAALEEHRLTALADRaclsLSSGQAQRLAMCSVMTAGPSLVIADEPTSLL 155
Cdd:cd03292 94 NVYENVAFALEVT--GVPPREIRKRVPAALELVGLSHKHRALPAE----LSGGEQQRVAIARAIVNSPTILIADEPTGNL 167
|
170 180 190
....*....|....*....|....*....|....
gi 2158298083 156 DGRHRRIVADRLlaaDPSAPDGFQLLLVTHDLEL 189
Cdd:cd03292 168 DPDTTWEIMNLL---KKINKAGTTVVVATHAKEL 198
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-206 |
1.89e-12 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 66.02 E-value: 1.89e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTA-PRVAVIGENGSGKSTLARAIAGLADVvAGEVSVHGVD-AVRDVKALRRTVGFVFANPaaQMVMPTVRE 79
Cdd:PRK11174 365 LAGPLNFTLPAgQRIALVGPSGAGKTSLLNALLGFLPY-QGSLKINGIElRELDPESWRKHLSWVGQNP--QLPHGTLRD 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 80 DVELTVKSLRDDAGRRLAKDDVAARVAAALEEHRLTALADRAcLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRH 159
Cdd:PRK11174 442 NVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQA-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS 520
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2158298083 160 RRIVadrlLAADPSAPDGFQLLLVTHDLELARACDEaVWI--HGGHVER 206
Cdd:PRK11174 521 EQLV----MQALNAASRRQTTLMVTHQLEDLAQWDQ-IWVmqDGQIVQQ 564
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
3-190 |
2.49e-12 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 65.24 E-value: 2.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDaVRDVKALRRTVGFVFANPAAQMVMpTVREDV 81
Cdd:PRK11607 35 VDDVSLTIYKGEIfALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVD-LSHVPPYQRPINMMFQSYALFPHM-TVEQNI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 82 ELTVKSlrddagRRLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRr 161
Cdd:PRK11607 113 AFGLKQ------DKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLR- 185
|
170 180 190
....*....|....*....|....*....|.
gi 2158298083 162 ivaDR--LLAADPSAPDGFQLLLVTHDLELA 190
Cdd:PRK11607 186 ---DRmqLEVVDILERVGVTCVMVTHDQEEA 213
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-216 |
2.59e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 64.73 E-value: 2.59e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAG-----EVSVHG--VDAVRDVKALRRTVGFVFANP----- 68
Cdd:PRK14271 36 VLDQVSMGFPARAVtSLMGPTGSGKTTFLRTLNRMNDKVSGyrysgDVLLGGrsIFNYRDVLEFRRRVGMLFQRPnpfpm 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 69 -AAQMVMPTVREDVELTVKSLRDDAGRRLAKDDVAARVAAALEEhrltaladrACLSLSSGQAQRLAMCSVMTAGPSLVI 147
Cdd:PRK14271 116 sIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSD---------SPFRLSGGQQQLLCLARTLAVNPEVLL 186
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 148 ADEPTSLLDgrhrRIVADRLLAADPSAPDGFQLLLVTHDL-ELARACDEAVWIHGGHVERTGPAEDVVEA 216
Cdd:PRK14271 187 LDEPTSALD----PTTTEKIEEFIRSLADRLTVIIVTHNLaQAARISDRAALFFDGRLVEEGPTEQLFSS 252
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
2-211 |
2.94e-12 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 64.26 E-value: 2.94e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTL-TAPRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHG--VD-AVRDVKALRRTVGFVFANPAAQMVMPTV 77
Cdd:PRK13638 16 VLKGLNLDFsLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGkpLDySKRGLLALRQQVATVFQDPEQQIFYTDI 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 78 REDVELTVKSL---RDDAGRRLAKDDVAARVAAaleehrltaLADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSL 154
Cdd:PRK13638 96 DSDIAFSLRNLgvpEAEITRRVDEALTLVDAQH---------FRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAG 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2158298083 155 LD--GRHRRIVADRLLAAdpsapDGFQLLLVTHDLELARACDEAVWI--HGGHVERTGPAE 211
Cdd:PRK13638 167 LDpaGRTQMIAIIRRIVA-----QGNHVIISSHDIDLIYEISDAVYVlrQGQILTHGAPGE 222
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
3-208 |
3.10e-12 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 63.71 E-value: 3.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTA-PRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGvdavRDVKALRRTVGFvfaNPAAqmvmpTVREDV 81
Cdd:cd03220 38 LKDVSFEVPRgERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG----RVSSLLGLGGGF---NPEL-----TGRENI 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 82 EL--TVKSLRDDagrRLAKDDVAARVAAALEEHRltalaDRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRH 159
Cdd:cd03220 106 YLngRLLGLSRK---EIDEKIDEIIEFSELGDFI-----DLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAF 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2158298083 160 RRIVADRL--LAADPSApdgfqLLLVTHDLELARA-CDEAVWIHGGHVERTG 208
Cdd:cd03220 178 QEKCQRRLreLLKQGKT-----VILVSHDPSSIKRlCDRALVLEKGKIRFDG 224
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
1-156 |
3.65e-12 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 63.15 E-value: 3.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 1 MLLDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDVKALRRTVGFVFANPAAQMVMpTVRE 79
Cdd:TIGR01189 14 MLFEGLSFTLNAGEaLQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPHENILYLGHLPGLKPEL-SALE 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2158298083 80 DVELtvksLRDDAGrrlakdDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLD 156
Cdd:TIGR01189 93 NLHF----WAAIHG------GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALD 159
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
2-190 |
3.93e-12 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 63.95 E-value: 3.93e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDaVRDVKALRRT--VGFVFANP----AAQMvm 74
Cdd:COG1101 21 ALDGLNLTIEEGDfVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKD-VTKLPEYKRAkyIGRVFQDPmmgtAPSM-- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 75 pTVREDVEL-------------TVKSLRDDAGRRLAKddvaarvaaaLE---EHRLTALADraclSLSSGQAQRLAMcsV 138
Cdd:COG1101 98 -TIEENLALayrrgkrrglrrgLTKKRRELFRELLAT----------LGlglENRLDTKVG----LLSGGQRQALSL--L 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2158298083 139 MT--AGPSLVIADEPTSLLDGRH--------RRIVADRLLAAdpsapdgfqlLLVTHDLELA 190
Cdd:COG1101 161 MAtlTKPKLLLLDEHTAALDPKTaalvleltEKIVEENNLTT----------LMVTHNMEQA 212
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
4-156 |
4.37e-12 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 64.34 E-value: 4.37e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 4 DGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVR----DVKALRRTVGFVFANPAA----QMVM 74
Cdd:PRK15079 38 DGVTLRLYEGEtLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGmkddEWRAVRSDIQMIFQDPLAslnpRMTI 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 75 PTV-------------REDVELTVKSLRDDAGrrlakddvaarvaaaleehRLTALADRACLSLSSGQAQRLAMCSVMTA 141
Cdd:PRK15079 118 GEIiaeplrtyhpklsRQEVKDRVKAMMLKVG-------------------LLPNLINRYPHEFSGGQCQRIGIARALIL 178
|
170
....*....|....*
gi 2158298083 142 GPSLVIADEPTSLLD 156
Cdd:PRK15079 179 EPKLIICDEPVSALD 193
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
2-218 |
5.25e-12 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 62.54 E-value: 5.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLAD--VVAGEVSVHGvdavRDVKAL------RRTVGFVFANPAAqm 72
Cdd:cd03217 15 ILKGVNLTIKKGEVhALMGPNGSGKSTLAKTIMGHPKyeVTEGEILFKG----EDITDLppeeraRLGIFLAFQYPPE-- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 73 vMPTVRedvelTVKSLRD-DAGrrlakddvaarvaaaleehrltaladraclsLSSGQAQRLAMCSVMTAGPSLVIADEP 151
Cdd:cd03217 89 -IPGVK-----NADFLRYvNEG-------------------------------FSGGEKKRNEILQLLLLEPDLAILDEP 131
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2158298083 152 TSLLDGRHRRIVAD---RLLAadpsapDGFQLLLVTHDLELARAC--DEAVWIHGGHVERTGPAEDVVEAYE 218
Cdd:cd03217 132 DSGLDIDALRLVAEvinKLRE------EGKSVLIITHYQRLLDYIkpDRVHVLYDGRIVKSGDKELALEIEK 197
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
3-208 |
5.73e-12 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 62.94 E-value: 5.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDaVRD--VKALRRTVGFVFANPaaQMVMPTVRE 79
Cdd:cd03249 19 LKGLSLTIPPGKtVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVD-IRDlnLRWLRSQIGLVSQEP--VLFDGTIAE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 80 DVELTVKSLRDDAGRRLAKDDVAARVAAALEEHRLTALADRAClSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRH 159
Cdd:cd03249 96 NIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGS-QLSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2158298083 160 RRIVADRLlaadPSAPDGFQLLLVTHDLELARACDEAVWIHGGHVERTG 208
Cdd:cd03249 175 EKLVQEAL----DRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQG 219
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
15-208 |
5.82e-12 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 64.28 E-value: 5.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 15 VAVIGENGSGKSTLARAIAGLADVVAGEVSVhGVDAVRDVKALRRTVGFVFANPAAQMVMpTVREDVELtvkslrddaGR 94
Cdd:PRK11000 32 VVFVGPSGCGKSTLLRMIAGLEDITSGDLFI-GEKRMNDVPPAERGVGMVFQSYALYPHL-SVAENMSF---------GL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 95 RLA---KDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHR---RIVADRL- 167
Cdd:PRK11000 101 KLAgakKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRvqmRIEISRLh 180
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2158298083 168 --LaadpsapdGFQLLLVTHD-LELARACDEAVWIHGGHVERTG 208
Cdd:PRK11000 181 krL--------GRTMIYVTHDqVEAMTLADKIVVLDAGRVAQVG 216
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
3-208 |
5.91e-12 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 61.95 E-value: 5.91e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTA-PRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDVKALRRTVGFvfanpaaqmvmptVREDV 81
Cdd:cd03247 18 LKNLSLELKQgEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV-------------LNQRP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 82 ELTVKSLRDDAGRRlakddvaarvaaaleehrltaladraclsLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDgrhrR 161
Cdd:cd03247 85 YLFDTTLRNNLGRR-----------------------------FSGGERQRLALARILLQDAPIVLLDEPTVGLD----P 131
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2158298083 162 IVADRLLAADPSAPDGFQLLLVTHDLELARACDEAVWIHGGHVERTG 208
Cdd:cd03247 132 ITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
3-229 |
6.39e-12 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 63.94 E-value: 6.39e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAV----RDVKALRRTVGFVFANPAaqmVMP-- 75
Cdd:COG1135 21 LDDVSLTIEKGEIfGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTalseRELRAARRKIGMIFQHFN---LLSsr 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 76 TVREDVELTVKSLRDDAGRRLAKddvaarVAAALEehrLTALADRACL---SLSSGQAQR------LAmcsvmtAGPSLV 146
Cdd:COG1135 98 TVAENVALPLEIAGVPKAEIRKR------VAELLE---LVGLSDKADAypsQLSGGQKQRvgiaraLA------NNPKVL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 147 IADEPTSLLDGRH--------RRIvADRLlaadpsapdGFQLLLVTHDLELARA-CDEAVWIHGGHVERTGPAEDVV--- 214
Cdd:COG1135 163 LCDEATSALDPETtrsildllKDI-NREL---------GLTIVLITHEMDVVRRiCDRVAVLENGRIVEQGPVLDVFanp 232
|
250
....*....|....*..
gi 2158298083 215 --EAYERFLDHAVAAEL 229
Cdd:COG1135 233 qsELTRRFLPTVLNDEL 249
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
3-217 |
6.98e-12 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 63.59 E-value: 6.98e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGL--ADvvAGEVSVHGVDAVRDVkalRRTVGFvfanpaaqmvMP---- 75
Cdd:COG4152 17 VDDVSFTVPKGEIfGLLGPNGAGKTTTIRIILGIlaPD--SGEVLWDGEPLDPED---RRRIGY----------LPeerg 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 76 -----TVREDV----ELtvKSL-RDDAGRRLAKddvaarvaaALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSL 145
Cdd:COG4152 82 lypkmKVGEQLvylaRL--KGLsKAEAKRRADE---------WLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPEL 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2158298083 146 VIADEPTSLLDGRHRRIVADRLLA-ADPSAPdgfqLLLVTHDLELA-RACDEAVWIHGGHVERTGPAEDVVEAY 217
Cdd:COG4152 151 LILDEPFSGLDPVNVELLKDVIRElAAKGTT----VIFSSHQMELVeELCDRIVIINKGRKVLSGSVDEIRRQF 220
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
3-223 |
7.57e-12 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 63.11 E-value: 7.57e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGL----------ADVVAGEVSVHGVDAvRDVKALRRTVGFVFA--NPA 69
Cdd:PRK09984 20 LHAVDLNIHHGEmVALLGPSGSGKSTLLRHLSGLitgdksagshIELLGRTVQREGRLA-RDIRKSRANTGYIFQqfNLV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 70 AQMvmpTVREDVelTVKSLRDDAGRRLA----KDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSL 145
Cdd:PRK09984 99 NRL---SVLENV--LIGALGSTPFWRTCfswfTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKV 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2158298083 146 VIADEPTSLLDGRHRRIVADRLlaADPSAPDGFQLLLVTHDLELA-RACDEAVWIHGGHVERTGPAEDVVEayERFlDH 223
Cdd:PRK09984 174 ILADEPIASLDPESARIVMDTL--RDINQNDGITVVVTLHQVDYAlRYCERIVALRQGHVFYDGSSQQFDN--ERF-DH 247
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
3-204 |
1.03e-11 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 61.91 E-value: 1.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSV--HGVDAvrdvkALRRTVGFVfanPAAQMVMPTVR- 78
Cdd:cd03269 16 LDDISFSVEKGEIfGLLGPNGAGKTTTIRMILGIILPDSGEVLFdgKPLDI-----AARNRIGYL---PEERGLYPKMKv 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 79 EDVELTVKSLRDdagrrLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGR 158
Cdd:cd03269 88 IDQLVYLAQLKG-----LKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPV 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2158298083 159 HRRIVADRLLAAdpsAPDGFQLLLVTHDLELA-RACDEAVWIHGGHV 204
Cdd:cd03269 163 NVELLKDVIREL---ARAGKTVILSTHQMELVeELCDRVLLLNKGRA 206
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
7-212 |
1.05e-11 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 63.20 E-value: 1.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 7 DLTLTAPR---VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDaVRDVKALRRTVGFVFANPAAQMVMpTVREDVEL 83
Cdd:PRK11432 24 NLNLTIKQgtmVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGED-VTHRSIQQRDICMVFQSYALFPHM-SLGENVGY 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 84 TVKSLRddagrrLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRIV 163
Cdd:PRK11432 102 GLKMLG------VPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSM 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2158298083 164 ADRLLAADPSApdGFQLLLVTHDLELARAC-DEAVWIHGGHVERTGPAED 212
Cdd:PRK11432 176 REKIRELQQQF--NITSLYVTHDQSEAFAVsDTVIVMNKGKIMQIGSPQE 223
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
2-203 |
1.37e-11 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 60.15 E-value: 1.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTA-PRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGvdavrdvkalRRTVGFVfanpaAQmvmptvred 80
Cdd:cd03221 15 LLKDISLTINPgDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS----------TVKIGYF-----EQ--------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 81 veltvkslrddagrrlakddvaarvaaaleehrltaladraclsLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHR 160
Cdd:cd03221 71 --------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESI 106
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2158298083 161 RIVADRLLAadpsapdgFQ--LLLVTHDLE-LARACDEAVWIHGGH 203
Cdd:cd03221 107 EALEEALKE--------YPgtVILVSHDRYfLDQVATKIIELEDGK 144
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
2-205 |
1.46e-11 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 63.16 E-value: 1.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAP-RVAVIGENGSGKSTLARAIAGLADVVAGEVSV-HGVdavrdvkalrrTVGFVfanpaAQMvmptvRE 79
Cdd:COG0488 330 LLDDLSLRIDRGdRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKLgETV-----------KIGYF-----DQH-----QE 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 80 --DVELTV----KSLRDDAGrrlakddvaarvaaalEEHRLTAL---------ADRACLSLSSGQAQRLAMCSVMTAGPS 144
Cdd:COG0488 389 elDPDKTVldelRDGAPGGT----------------EQEVRGYLgrflfsgddAFKPVGVLSGGEKARLALAKLLLSPPN 452
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2158298083 145 LVIADEPTSLLDGRHRRIVADRLlaadpsapDGFQ--LLLVTHDLE-LARACDEAVWIHGGHVE 205
Cdd:COG0488 453 VLLLDEPTNHLDIETLEALEEAL--------DDFPgtVLLVSHDRYfLDRVATRILEFEDGGVR 508
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
15-205 |
1.76e-11 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 61.76 E-value: 1.76e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 15 VAVIGENGSGKSTLARAIAGLADVVAGEV-----SVHGVDAVRDVKALRRTVGFVFA--------NPAAQMVMPTvredv 81
Cdd:PRK11629 38 MAIVGSSGSGKSTLLHLLGGLDTPTSGDVifngqPMSKLSSAAKAELRNQKLGFIYQfhhllpdfTALENVAMPL----- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 82 eLTVKSLRDDAGRRlAKDDVAARVAAALEEHRLTaladraclSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHrr 161
Cdd:PRK11629 113 -LIGKKKPAEINSR-ALEMLAAVGLEHRANHRPS--------ELSGGERQRVAIARALVNNPRLVLADEPTGNLDARN-- 180
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2158298083 162 ivADRL--LAADPSAPDGFQLLLVTHDLELARACDEAVWIHGGHVE 205
Cdd:PRK11629 181 --ADSIfqLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLT 224
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
2-216 |
2.46e-11 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 61.73 E-value: 2.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHG-VDAVRDVKALRRTVGFVFAN-PAAQMVmpTVR 78
Cdd:PRK10575 26 LLHPLSLTFPAGKVtGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAqPLESWSSKAFARKVAYLPQQlPAAEGM--TVR 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 79 EDVELTVKSLRDDAGRRLAKDDVAARVAAALEEhrLTALADRACLSLSSGQAQRlAMCSVMTAGPS-LVIADEPTSLLDG 157
Cdd:PRK10575 104 ELVAIGRYPWHGALGRFGAADREKVEEAISLVG--LKPLAHRLVDSLSGGERQR-AWIAMLVAQDSrCLLLDEPTSALDI 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 158 RHRriVADRLLAADPSAPDGFQLLLVTHDLEL-ARACDEAVWIHGGHVERTGPAEDVVEA 216
Cdd:PRK10575 181 AHQ--VDVLALVHRLSQERGLTVIAVLHDINMaARYCDYLVALRGGEMIAQGTPAELMRG 238
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
7-197 |
3.66e-11 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 60.58 E-value: 3.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 7 DLTLT-APRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDaVRDVKALRRTVGFVFA--NPAAQMvmpTVREDVEL 83
Cdd:cd03298 18 DLTFAqGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVD-VTAAPPADRPVSMLFQenNLFAHL---TVEQNVGL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 84 TVK-SLRDDAGRRLAkddvaarVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRI 162
Cdd:cd03298 94 GLSpGLKLTAEDRQA-------IEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE 166
|
170 180 190
....*....|....*....|....*....|....*
gi 2158298083 163 VADrlLAADPSAPDGFQLLLVTHDLELARACDEAV 197
Cdd:cd03298 167 MLD--LVLDLHAETKMTVLMVTHQPEDAKRLAQRV 199
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
3-206 |
4.18e-11 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 60.45 E-value: 4.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLtaPR---VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVR----DVKALRRTVGFVFanpaaQ---- 71
Cdd:COG2884 18 LSDVSLEI--EKgefVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRlkrrEIPYLRRRIGVVF-----Qdfrl 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 72 ---MvmpTVREDVELTVKSL---RDDAGRRLAKDdvaarvaaaLEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSL 145
Cdd:COG2884 91 lpdR---TVYENVALPLRVTgksRKEIRRRVREV---------LDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPEL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2158298083 146 VIADEPTSLLDGRH-RRIVadRLLAAdpsapdgFQ-----LLLVTHDLELARACDEAVW-IHGGHVER 206
Cdd:COG2884 159 LLADEPTGNLDPETsWEIM--ELLEE-------INrrgttVLIATHDLELVDRMPKRVLeLEDGRLVR 217
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
2-201 |
4.51e-11 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 59.30 E-value: 4.51e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAPRVAVI-GENGSGKSTLARAIAgladVVAGEVSVHGVdaVRDVKALRRTVGFVfanpaaqmvmptvreD 80
Cdd:cd03227 10 YFVPNDVTFGEGSLTIItGPNGSGKSTILDAIG----LALGGAQSATR--RRSGVKAGCIVAAV---------------S 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 81 VELTVkslrddagrrlakddvaarvaaaleehrltaladrACLSLSSGQAQRLAMCSVM----TAGPSLVIADEPTSLLD 156
Cdd:cd03227 69 AELIF-----------------------------------TRLQLSGGEKELSALALILalasLKPRPLYILDEIDRGLD 113
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2158298083 157 GRHRRIVADRLLAadpSAPDGFQLLLVTHDLELAracDEAVWIHG 201
Cdd:cd03227 114 PRDGQALAEAILE---HLVKGAQVIVITHLPELA---ELADKLIH 152
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
3-216 |
5.14e-11 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 61.66 E-value: 5.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVR----DVKALRRT-VGFVFAN-------PA 69
Cdd:PRK10535 24 LKGISLDIYAGEmVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATldadALAQLRREhFGFIFQRyhllshlTA 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 70 AQMV-MPTVREDVELTvkslrddagRRLAKDDVAARvaaaleehRLtALADRACL---SLSSGQAQRLAMCSVMTAGPSL 145
Cdd:PRK10535 104 AQNVeVPAVYAGLERK---------QRLLRAQELLQ--------RL-GLEDRVEYqpsQLSGGQQQRVSIARALMNGGQV 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2158298083 146 VIADEPTSLLDGRHRRIVADRLLAADPSapdGFQLLLVTHDLELARACDEAVWIHGGHVERTGPAEDVVEA 216
Cdd:PRK10535 166 ILADEPTGALDSHSGEEVMAILHQLRDR---GHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKVNV 233
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
7-213 |
5.29e-11 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 60.83 E-value: 5.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 7 DLTLTAPR---VAVIGENGSGKSTLARAIAGLADV------VAGEVSVHGVDAVR-DVKALRRTVGFVFA--NPAAQMvm 74
Cdd:PRK14246 28 DITIKIPNnsiFGIMGPSGSGKSTLLKVLNRLIEIydskikVDGKVLYFGKDIFQiDAIKLRKEVGMVFQqpNPFPHL-- 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 75 pTVREDVELTVKSLRDDAGRRLAKDDVAARVAAAL--EEH-RLTALADRaclsLSSGQAQRLAMCSVMTAGPSLVIADEP 151
Cdd:PRK14246 106 -SIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLwkEVYdRLNSPASQ----LSGGQQQRLTIARALALKPKVLLMDEP 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2158298083 152 TSLLDGRHRRIVaDRLLAadpSAPDGFQLLLVTHD-LELARACDEAVWIHGGHVERTGPAEDV 213
Cdd:PRK14246 181 TSMIDIVNSQAI-EKLIT---ELKNEIAIVIVSHNpQQVARVADYVAFLYNGELVEWGSSNEI 239
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
3-213 |
1.01e-10 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 60.20 E-value: 1.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD----AVRDVKALRRTVGF------------VF 65
Cdd:PRK11153 21 LNNVSLHIPAGEIfGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDltalSEKELRKARRQIGMifqhfnllssrtVF 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 66 ANPAaqmvMP-----TVREDVELTVKSLRDDAGrrlakddvaarvaaaleehrLTALADRACLSLSSGQAQRLAMCSVMT 140
Cdd:PRK11153 101 DNVA----LPlelagTPKAEIKARVTELLELVG--------------------LSDKADRYPAQLSGGQKQRVAIARALA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2158298083 141 AGPSLVIADEPTSLLDGRHRRIVADrlLAADPSAPDGFQLLLVTHDLELARA-CDEAVWIHGGHVERTGPAEDV 213
Cdd:PRK11153 157 SNPKVLLCDEATSALDPATTRSILE--LLKDINRELGLTIVLITHEMDVVKRiCDRVAVIDAGRLVEQGTVSEV 228
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
3-213 |
2.42e-10 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 59.65 E-value: 2.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGL--ADvvAGEVSVHGVDAVRD--VKALRRTVGFVF--ANPAAQMvmp 75
Cdd:COG1129 20 LDGVSLELRPGEVhALLGENGAGKSTLMKILSGVyqPD--SGEILLDGEPVRFRspRDAQAAGIAIIHqeLNLVPNL--- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 76 TVREDV----ELTVKSLRDDAG-RRLAKddvaarvaAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADE 150
Cdd:COG1129 95 SVAENIflgrEPRRGGLIDWRAmRRRAR--------ELLARLGLDIDPDTPVGDLSVAQQQLVEIARALSRDARVLILDE 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2158298083 151 PTSLLDGRHRRIVAD--RLLAAdpsapDGFQLLLVTHDL-ELARACDEAVWIHGGHVERTGPAEDV 213
Cdd:COG1129 167 PTASLTEREVERLFRiiRRLKA-----QGVAIIYISHRLdEVFEIADRVTVLRDGRLVGTGPVAEL 227
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
3-188 |
2.49e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 58.94 E-value: 2.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLT-APRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD-------------------------AVRDVKA 56
Cdd:PRK13651 23 LDNVSVEINqGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDeknkkktkekekvleklviqktrfkKIKKIKE 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 57 LRRTVGFVFANPAAQMVMPTVREDVELTVKSL---RDDAGRRLAKDDVAARvaaaLEEHRLtalaDRACLSLSSGQAQRL 133
Cdd:PRK13651 103 IRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMgvsKEEAKKRAAKYIELVG----LDESYL----QRSPFELSGGQKRRV 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2158298083 134 AMCSVMTAGPSLVIADEPTSLLD--GrhrriVADRLLAADPSAPDGFQLLLVTHDLE 188
Cdd:PRK13651 175 ALAGILAMEPDFLVFDEPTAGLDpqG-----VKEILEIFDNLNKQGKTIILVTHDLD 226
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
17-217 |
4.32e-10 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 58.28 E-value: 4.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 17 VIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDVKALRRTVGFVfanPAAQMVMP--TVREDVELTvkslrddaGR 94
Cdd:PRK13537 38 LLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVV---PQFDNLDPdfTVRENLLVF--------GR 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 95 R--LAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRIVADR---LLA 169
Cdd:PRK13537 107 YfgLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERlrsLLA 186
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2158298083 170 AdpsapdGFQLLLVTHDLELA-RACDEAVWIHGGH-VERTGPAE--------DVVEAY 217
Cdd:PRK13537 187 R------GKTILLTTHFMEEAeRLCDRLCVIEEGRkIAEGAPHAlieseigcDVIEIY 238
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
15-225 |
4.67e-10 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 58.71 E-value: 4.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 15 VAVIGENGSGKSTLARAIAGLADVVAGEVSVHG--VDAVRDVK--ALRRTVGFVFANPAA-----QMVMPTVREDVELTV 85
Cdd:PRK10261 353 LSLVGESGSGKSTTGRALLRLVESQGGEIIFNGqrIDTLSPGKlqALRRDIQFIFQDPYAsldprQTVGDSIMEPLRVHG 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 86 KSLRDDAGRRLAkddVAARVAAALEEHrltalADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRIVAD 165
Cdd:PRK10261 433 LLPGKAAAARVA---WLLERVGLLPEH-----AWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIIN 504
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2158298083 166 RLLaaDPSAPDGFQLLLVTHDLELA-RACDEAVWIHGGHVERTGPAEDVVE----AYERFLDHAV 225
Cdd:PRK10261 505 LLL--DLQRDFGIAYLFISHDMAVVeRISHRVAVMYLGQIVEIGPRRAVFEnpqhPYTRKLMAAV 567
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
3-219 |
5.28e-10 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 58.32 E-value: 5.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRVAVI-GENGSGKSTLARAIAGLADVVAGEVSVHGVDaVRDVKALRRTVGFVFANPAAQMVMpTVREDV 81
Cdd:PRK11650 20 IKGIDLDVADGEFIVLvGPSGCGKSTLLRMVAGLERITSGEIWIGGRV-VNELEPADRDIAMVFQNYALYPHM-SVRENM 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 82 E--LTVKSL-RDDAGRRLAKddvaarVAAALEehrLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGR 158
Cdd:PRK11650 98 AygLKIRGMpKAEIEERVAE------AARILE---LEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAK 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2158298083 159 HRriVADRL--------LAADPsapdgfqlLLVTHD-LE---LAracDEAVWIHGGHVERTG-PaedvVEAYER 219
Cdd:PRK11650 169 LR--VQMRLeiqrlhrrLKTTS--------LYVTHDqVEamtLA---DRVVVMNGGVAEQIGtP----VEVYEK 225
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
3-216 |
7.63e-10 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 58.16 E-value: 7.63e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTA-PRVAVIGENGSGKSTLARAIAGL----ADVVAGEVSVHGVDAVR-DVKALRR----TVGFVFANPaaqM 72
Cdd:COG4172 26 VKGVSFDIAAgETLALVGESGSGKSVTALSILRLlpdpAAHPSGSILFDGQDLLGlSERELRRirgnRIAMIFQEP---M 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 73 -----VMPTVREDVE-LTV-KSLRDDAGRRLAkddvaarvAAALEEHRLTALADRacLS-----LSSGQAQRlamcsVMT 140
Cdd:COG4172 103 tslnpLHTIGKQIAEvLRLhRGLSGAAARARA--------LELLERVGIPDPERR--LDayphqLSGGQRQR-----VMI 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 141 A-----GPSLVIADEPTSLLDGRHRRIVADrlLAADPSAPDGFQLLLVTHDLEL-ARACDEAVWIHGGHVERTGPAEDVV 214
Cdd:COG4172 168 AmalanEPDLLIADEPTTALDVTVQAQILD--LLKDLQRELGMALLLITHDLGVvRRFADRVAVMRQGEIVEQGPTAELF 245
|
..
gi 2158298083 215 EA 216
Cdd:COG4172 246 AA 247
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
15-156 |
8.02e-10 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 58.13 E-value: 8.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 15 VAVIGENGSGKSTLARAIAGLAD---VVAGEVSVHGVdaVRDVKALRRTVGFVFANpaaQMVMP--TVREDveLTVKS-L 88
Cdd:TIGR00955 54 LAVMGSSGAGKTTLMNALAFRSPkgvKGSGSVLLNGM--PIDAKEMRAISAYVQQD---DLFIPtlTVREH--LMFQAhL 126
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2158298083 89 RddAGRRLAKDDVAARVAAALEEHRLTALAD------RACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLD 156
Cdd:TIGR00955 127 R--MPRRVTKKEKRERVDEVLQALGLRKCANtrigvpGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLD 198
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
18-216 |
9.16e-10 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 57.79 E-value: 9.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 18 IGENGSGKST----LARAIAGLADVVAGEVSVHGVDAvRDVKALRRTVGFVFANPAAQM-----VMPTVREDVELTVKSL 88
Cdd:PRK15134 318 VGESGSGKSTtglaLLRLINSQGEIWFDGQPLHNLNR-RQLLPVRHRIQVVFQDPNSSLnprlnVLQIIEEGLRVHQPTL 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 89 rdDAGRRLAKDDVAarvaaaLEEHRL-TALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDgrhrRIVADRL 167
Cdd:PRK15134 397 --SAAQREQQVIAV------MEEVGLdPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD----KTVQAQI 464
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2158298083 168 LAADPSAPDGFQL--LLVTHDLELARA-CDEAVWIHGGHVERTGPAEDVVEA 216
Cdd:PRK15134 465 LALLKSLQQKHQLayLFISHDLHVVRAlCHQVIVLRQGEVVEQGDCERVFAA 516
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
3-204 |
9.21e-10 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 56.96 E-value: 9.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDVKALRRTVGFVFANPAAQMVMPTVREDV 81
Cdd:cd03267 37 LKGISFTIEKGEiVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSF 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 82 ELTVKSLR---DDAGRRLAKDDvaarvaaalEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGR 158
Cdd:cd03267 117 YLLAAIYDlppARFKKRLDELS---------ELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVV 187
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2158298083 159 HRRIVADRLLAADpsAPDGFQLLLVTHDL-ELARACDEAVWIHGGHV 204
Cdd:cd03267 188 AQENIRNFLKEYN--RERGTTVLLTSHYMkDIEALARRVLVIDKGRL 232
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
3-190 |
1.84e-09 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 56.25 E-value: 1.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRVAVI-GENGSGKSTLARAIAGLADVVAGEVSVHGVdAVRDVKALRrtvGFVFANPAaqmVMP--TVRE 79
Cdd:PRK11248 17 LEDINLTLESGELLVVlGPSGCGKTTLLNLIAGFVPYQHGSITLDGK-PVEGPGAER---GVVFQNEG---LLPwrNVQD 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 80 DVELtvkslrddaGRRLAKDDVAARVAAALEEHRLTALA---DRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLD 156
Cdd:PRK11248 90 NVAF---------GLQLAGVEKMQRLEIAHQMLKKVGLEgaeKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD 160
|
170 180 190
....*....|....*....|....*....|....
gi 2158298083 157 GRHRRIVADRLLAAdpSAPDGFQLLLVTHDLELA 190
Cdd:PRK11248 161 AFTREQMQTLLLKL--WQETGKQVLLITHDIEEA 192
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
7-216 |
2.53e-09 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 55.76 E-value: 2.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 7 DLTLTAPR---VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDV-KALRRTVGFVFANPAAQMVMpTVREDVE 82
Cdd:PRK10253 25 NLTVEIPDghfTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYAsKEVARRIGLLAQNATTPGDI-TVQELVA 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 83 --------LTVKSLRDDAgrrlakddvaARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSL 154
Cdd:PRK10253 104 rgryphqpLFTRWRKEDE----------EAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTW 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2158298083 155 LDGRHRrivADRL-LAADPSAPDGFQLLLVTHDLELA-RACDEAVWIHGGHVERTGPAEDVVEA 216
Cdd:PRK10253 174 LDISHQ---IDLLeLLSELNREKGYTLAAVLHDLNQAcRYASHLIALREGKIVAQGAPKEIVTA 234
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
3-216 |
2.70e-09 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 56.07 E-value: 2.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLAD----VVAGEVSVHGVD----AVRDVKAL-RRTVGFVFANPAAQM 72
Cdd:COG4170 23 VDRVSLTLNEGEIrGLVGESGSGKSLIAKAICGITKdnwhVTADRFRWNGIDllklSPRERRKIiGREIAMIFQEPSSCL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 73 ------------VMPTVredvelTVKSL---RDDAGRRLAKDDVaarvaaaleeHRLTALADRACLS-----LSSGQAQR 132
Cdd:COG4170 103 dpsakigdqlieAIPSW------TFKGKwwqRFKWRKKRAIELL----------HRVGIKDHKDIMNsypheLTEGECQK 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 133 lamcsVMTA-----GPSLVIADEPTSLLDGRHR-RIVadRLLAAdPSAPDGFQLLLVTHDLE-LARACDEAVWIHGGHVE 205
Cdd:COG4170 167 -----VMIAmaianQPRLLIADEPTNAMESTTQaQIF--RLLAR-LNQLQGTSILLISHDLEsISQWADTITVLYCGQTV 238
|
250
....*....|.
gi 2158298083 206 RTGPAEDVVEA 216
Cdd:COG4170 239 ESGPTEQILKS 249
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
2-204 |
3.50e-09 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 55.17 E-value: 3.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD-AVRDVKALRRTVGFVFANPaaQMVMPTVRE 79
Cdd:cd03248 29 VLQDVSFTLHPGEVtALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPiSQYEHKYLHSKVSLVGQEP--VLFARSLQD 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 80 DVELTVKSLRDDAGRRLAKDDVAARVAAALEEHRLTALADRACLsLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRH 159
Cdd:cd03248 107 NIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQ-LSGGQKQRVAIARALIRNPQVLILDEATSALDAES 185
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2158298083 160 RRIVaDRLLAADPSAPdgfQLLLVTHDLELARACDEAVWIHGGHV 204
Cdd:cd03248 186 EQQV-QQALYDWPERR---TVLVIAHRLSTVERADQILVLDGGRI 226
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
3-189 |
3.72e-09 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 54.88 E-value: 3.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRVA-VIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVR----DVKALRRTVGFVFANPAAQMVMpTV 77
Cdd:PRK10908 18 LQGVTFHMRPGEMAfLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRlknrEVPFLRRQIGMIFQDHHLLMDR-TV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 78 REDVELTV---KSLRDDAGRRLAkddvaarvaAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSL 154
Cdd:PRK10908 97 YDNVAIPLiiaGASGDDIRRRVS---------AALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGN 167
|
170 180 190
....*....|....*....|....*....|....*
gi 2158298083 155 LDGrhrRIVADRLLAADPSAPDGFQLLLVTHDLEL 189
Cdd:PRK10908 168 LDD---ALSEGILRLFEEFNRVGVTVLMATHDIGL 199
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
15-216 |
3.86e-09 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 55.52 E-value: 3.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 15 VAVIGENGSGKSTLARAIAGLAD----VVAGEVSVHGVDAVRDVKALRRT-----VGFVFANPAAQM---------VMPT 76
Cdd:PRK11022 36 VGIVGESGSGKSVSSLAIMGLIDypgrVMAEKLEFNGQDLQRISEKERRNlvgaeVAMIFQDPMTSLnpcytvgfqIMEA 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 77 VREDVELTVKSLRDDAGRRLAKDDVAArvaaalEEHRLTALADRaclsLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLD 156
Cdd:PRK11022 116 IKVHQGGNKKTRRQRAIDLLNQVGIPD------PASRLDVYPHQ----LSGGMSQRVMIAMAIACRPKLLIADEPTTALD 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2158298083 157 GRHRRIVADRLLaaDPSAPDGFQLLLVTHDLEL-ARACDEAVWIHGGHVERTGPAEDVVEA 216
Cdd:PRK11022 186 VTIQAQIIELLL--ELQQKENMALVLITHDLALvAEAAHKIIVMYAGQVVETGKAHDIFRA 244
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
3-204 |
4.32e-09 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 55.07 E-value: 4.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSvhgvdavrdvkalrrtvgfvfanpAAQMVMPTVREDV 81
Cdd:PRK11247 28 LNQLDLHIPAGQfVAVVGRSGCGKSTLLRLLAGLETPSAGELL------------------------AGTAPLAEAREDT 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 82 ELTV--------KSLRDDAGRRLaKDDVAARVAAALEEhrlTALADRAC---LSLSSGQAQRLAMCSVMTAGPSLVIADE 150
Cdd:PRK11247 84 RLMFqdarllpwKKVIDNVGLGL-KGQWRDAALQALAA---VGLADRANewpAALSGGQKQRVALARALIHRPGLLLLDE 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2158298083 151 PTSLLDGRHRRIVADrlLAADPSAPDGFQLLLVTHDLELARA-CDEAVWIHGGHV 204
Cdd:PRK11247 160 PLGALDALTRIEMQD--LIESLWQQHGFTVLLVTHDVSEAVAmADRVLLIEEGKI 212
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
6-213 |
8.63e-09 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 54.88 E-value: 8.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 6 VDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHG---VDAVRDV--KALRRTVGFVFANpaAQM-----VM 74
Cdd:PRK11144 17 VNLTLPAQGItAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGrvlFDAEKGIclPPEKRRIGYVFQD--ARLfphykVR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 75 PTVREDVELTVKSLRDDAGRRLAkddvaarvaaaleehrLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSL 154
Cdd:PRK11144 95 GNLRYGMAKSMVAQFDKIVALLG----------------IEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2158298083 155 LDGRHRRIVADRL--LAADPSAPdgfqLLLVTHDL-ELARACDEAVWIHGGHVERTGPAEDV 213
Cdd:PRK11144 159 LDLPRKRELLPYLerLAREINIP----ILYVSHSLdEILRLADRVVVLEQGKVKAFGPLEEV 216
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
7-202 |
1.11e-08 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 53.24 E-value: 1.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 7 DLTLTAPR---VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGvdavrdvkalrrTVGFVfanpaAQM--VMP-TVRED 80
Cdd:cd03250 23 DINLEVPKgelVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------------SIAYV-----SQEpwIQNgTIREN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 81 V-----------ELTVK--SLRDDagrrLAkddvaarvaaALEEHRLTALADRAcLSLSSGQAQRLAMCSVMTAGPSLVI 147
Cdd:cd03250 86 IlfgkpfdeeryEKVIKacALEPD----LE----------ILPDGDLTEIGEKG-INLSGGQKQRISLARAVYSDADIYL 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2158298083 148 ADEPTSLLDGRHRRIVADRLLAADPSapDGFQLLLVTHDLELARACDEAVWIHGG 202
Cdd:cd03250 151 LDDPLSAVDAHVGRHIFENCILGLLL--NNKTRILVTHQLQLLPHADQIVVLDNG 203
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
7-156 |
1.12e-08 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 54.02 E-value: 1.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 7 DLTLTAPR---VAVIGENGSGKSTLARAIAGLADV-----VAGEVSVHG-------VDAVrdvkALRRTVGFVFA--NPA 69
Cdd:PRK14243 28 NVWLDIPKnqiTAFIGPSGCGKSTILRCFNRLNDLipgfrVEGKVTFHGknlyapdVDPV----EVRRRIGMVFQkpNPF 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 70 AQMVMPTV---------REDV-ELTVKSLRDDAgrrlakddvaarvaaaLEEHRLTALADRAcLSLSSGQAQRLAMCSVM 139
Cdd:PRK14243 104 PKSIYDNIaygaringyKGDMdELVERSLRQAA----------------LWDEVKDKLKQSG-LSLSGGQQQRLCIARAI 166
|
170
....*....|....*..
gi 2158298083 140 TAGPSLVIADEPTSLLD 156
Cdd:PRK14243 167 AVQPEVILMDEPCSALD 183
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
111-217 |
1.17e-08 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 54.42 E-value: 1.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 111 EHRLTALADraclSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRIVADRLLAAdpSAPDGFQLLLVTHDLE-L 189
Cdd:TIGR03269 159 SHRITHIAR----DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEA--VKASGISMVLTSHWPEvI 232
|
90 100
....*....|....*....|....*...
gi 2158298083 190 ARACDEAVWIHGGHVERTGPAEDVVEAY 217
Cdd:TIGR03269 233 EDLSDKAIWLENGEIKEEGTPDEVVAVF 260
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
16-192 |
1.31e-08 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 54.63 E-value: 1.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 16 AVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDVKALRRTVGFVFANPAAQMVMpTVREDVELTVKsLRDDAGRR 95
Cdd:TIGR01257 1969 GLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLL-TGREHLYLYAR-LRGVPAEE 2046
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 96 LAKDDVAArvaaaLEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRIVADRLLAAdpsAP 175
Cdd:TIGR01257 2047 IEKVANWS-----IQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSI---IR 2118
|
170
....*....|....*..
gi 2158298083 176 DGFQLLLVTHDLELARA 192
Cdd:TIGR01257 2119 EGRAVVLTSHSMEECEA 2135
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
15-191 |
1.35e-08 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 53.78 E-value: 1.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 15 VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD-AVRDVKAL----RRTV-----GFVFANPAAQMVMP-----TVRE 79
Cdd:PRK11701 35 LGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDgQLRDLYALseaeRRRLlrtewGFVHQHPRDGLRMQvsaggNIGE 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 80 DV----ELTVKSLRDDAGRRLAKddvaarvaAALEEHRLtalaDRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLL 155
Cdd:PRK11701 115 RLmavgARHYGDIRATAGDWLER--------VEIDAARI----DDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGL 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2158298083 156 D----GR----HRRIVADRLLAAdpsapdgfqlLLVTHDLELAR 191
Cdd:PRK11701 183 DvsvqARlldlLRGLVRELGLAV----------VIVTHDLAVAR 216
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
3-213 |
1.46e-08 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 54.26 E-value: 1.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGL--ADvvAGEVSVHGvdavRDVK------ALRRTVGFVFANPaaqMV 73
Cdd:COG3845 21 NDDVSLTVRPGEIhALLGENGAGKSTLMKILYGLyqPD--SGEILIDG----KPVRirsprdAIALGIGMVHQHF---ML 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 74 MP--TVREDVELtvkSLRDDAGRRLAKDDvaarvaaalEEHRLTALADRACL---------SLSSGQAQRLAMCSVMTAG 142
Cdd:COG3845 92 VPnlTVAENIVL---GLEPTKGGRLDRKA---------ARARIRELSERYGLdvdpdakveDLSVGEQQRVEILKALYRG 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2158298083 143 PSLVIADEPTSLLDGRHrrivADRL------LAAdpsapDGFQLLLVTHDL-ELARACDEAVWIHGGHVERTGPAEDV 213
Cdd:COG3845 160 ARILILDEPTAVLTPQE----ADELfeilrrLAA-----EGKSIIFITHKLrEVMAIADRVTVLRRGKVVGTVDTAET 228
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
2-170 |
1.59e-08 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 52.95 E-value: 1.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAvrdvkalrrtvgfVFANPAAQMV------- 73
Cdd:PRK13539 17 LFSGLSFTLAAGEaLVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI-------------DDPDVAEACHylghrna 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 74 ---MPTVREDVELTvKSLRDDAGRRLAkddvaarvaAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADE 150
Cdd:PRK13539 84 mkpALTVAENLEFW-AAFLGGEELDIA---------AALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDE 153
|
170 180
....*....|....*....|
gi 2158298083 151 PTSLLDgrhrrIVADRLLAA 170
Cdd:PRK13539 154 PTAALD-----AAAVALFAE 168
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-201 |
2.36e-08 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 53.12 E-value: 2.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVvAGEVSVHG---------VDAVRDVKALRRTVGFVFANPaaQ 71
Cdd:PRK14258 22 ILEGVSMEIYQSKVtAIIGPSGCGKSTFLKCLNRMNEL-ESEVRVEGrveffnqniYERRVNLNRLRRQVSMVHPKP--N 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 72 MVMPTVREDVELTVKSLRDDAGRRLAKDDVAARVAAALEE---HRLtalaDRACLSLSSGQAQRLAMCSVMTAGPSLVIA 148
Cdd:PRK14258 99 LFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDeikHKI----HKSALDLSGGQQQRLCIARALAVKPKVLLM 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2158298083 149 DEPTSLLDG----RHRRIVADRLLAADpsapdgFQLLLVTHDL-ELARACDEAVWIHG 201
Cdd:PRK14258 175 DEPCFGLDPiasmKVESLIQSLRLRSE------LTMVIVSHNLhQVSRLSDFTAFFKG 226
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
1-158 |
2.94e-08 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 51.86 E-value: 2.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 1 MLLDGVD-----LTLTAprvaVIGENGSGKSTLARAIAG--LADVVAGEVSVHGvdaVRDVKALRRTVGFVFANPaAQMV 73
Cdd:cd03232 21 QLLNNISgyvkpGTLTA----LMGESGAGKTTLLDVLAGrkTAGVITGEILING---RPLDKNFQRSTGYVEQQD-VHSP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 74 MPTVREDVELTvkslrddagrrlakddvaarvaaaleehrltaladrACL-SLSSGQAQRLAMCSVMTAGPSLVIADEPT 152
Cdd:cd03232 93 NLTVREALRFS------------------------------------ALLrGLSVEQRKRLTIGVELAAKPSILFLDEPT 136
|
....*.
gi 2158298083 153 SLLDGR 158
Cdd:cd03232 137 SGLDSQ 142
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
7-225 |
2.98e-08 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 52.96 E-value: 2.98e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 7 DLTLTAPR---VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVdAVRdvKALRRT-VGFVFANPAAQMVMPTVREDVE 82
Cdd:PRK15056 25 DASFTVPGgsiAALVGVNGSGKSTLFKALMGFVRLASGKISILGQ-PTR--QALQKNlVAYVPQSEEVDWSFPVLVEDVV 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 83 LTvkslrddaGR-------RLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLL 155
Cdd:PRK15056 102 MM--------GRyghmgwlRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGV 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2158298083 156 DGR-HRRIVADRLLAADpsapDGFQLLLVTHDL-ELARACDEAVWIHG-----GHVERTGPAEDVVEAYERFLDHAV 225
Cdd:PRK15056 174 DVKtEARIISLLRELRD----EGKTMLVSTHNLgSVTEFCDYTVMVKGtvlasGPTETTFTAENLELAFSGVLRHVA 246
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
19-192 |
4.18e-08 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 51.87 E-value: 4.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 19 GENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDVKALRRTVGFVFANPAAQMVMpTVRE----DVELTVKSLRDDAGR 94
Cdd:PRK13540 34 GSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYL-TLREnclyDIHFSPGAVGITELC 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 95 RLAKddvaarvaaaleehrLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRIVADRLLAadpSA 174
Cdd:PRK13540 113 RLFS---------------LEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQE---HR 174
|
170
....*....|....*....
gi 2158298083 175 PDGFQLLLVTH-DLELARA 192
Cdd:PRK13540 175 AKGGAVLLTSHqDLPLNKA 193
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
3-49 |
4.42e-08 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 51.99 E-value: 4.42e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRVAVI-GENGSGKSTLARAIAGLAD--VVAGEVSVHGVD 49
Cdd:COG0396 16 LKGVNLTIKPGEVHAImGPNGSGKSTLAKVLMGHPKyeVTSGSILLDGED 65
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
7-211 |
5.03e-08 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 52.71 E-value: 5.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 7 DLTLTAPR---VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDaVRDVK--ALRRTVGFVFANpaAQMVMPTV---- 77
Cdd:PRK11176 361 NINFKIPAgktVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHD-LRDYTlaSLRNQVALVSQN--VHLFNDTIanni 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 78 ---------REDVEltvkslrddagrRLAKDDVAARVAAALeEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIA 148
Cdd:PRK11176 438 ayarteqysREQIE------------EAARMAYAMDFINKM-DNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILIL 504
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2158298083 149 DEPTSLLDGRHRRIVAdrllaadpSAPDGFQ----LLLVTHDLELARACDEAVWIHGGH-VERTGPAE 211
Cdd:PRK11176 505 DEATSALDTESERAIQ--------AALDELQknrtSLVIAHRLSTIEKADEILVVEDGEiVERGTHAE 564
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
15-221 |
5.41e-08 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 52.59 E-value: 5.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 15 VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVrdvkalrrtvgfvFANPAAQMVMPTVREDVELtvKSLRddagR 94
Cdd:PRK13545 53 VGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL-------------IAISSGLNGQLTGIENIEL--KGLM----M 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 95 RLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRIVADRLlaaDPSA 174
Cdd:PRK13545 114 GLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKM---NEFK 190
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2158298083 175 PDGFQLLLVTHDLELARA-CDEAVWIHGGHVERTGPAEDVVEAYERFL 221
Cdd:PRK13545 191 EQGKTIFFISHSLSQVKSfCTKALWLHYGQVKEYGDIKEVVDHYDEFL 238
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
3-158 |
5.74e-08 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 52.51 E-value: 5.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDaVRDV--KALRRTVGFV--------------- 64
Cdd:COG5265 374 LKGVSFEVPAGKtVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQD-IRDVtqASLRAAIGIVpqdtvlfndtiayni 452
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 65 -FANPAAQmvmptvREDVEltvkslrddagrRLAKDDVAARVAAALEEHRLTALADRAcLSLSSGQAQRLAMCSVMTAGP 143
Cdd:COG5265 453 aYGRPDAS------EEEVE------------AAARAAQIHDFIESLPDGYDTRVGERG-LKLSGGEKQRVAIARTLLKNP 513
|
170
....*....|....*
gi 2158298083 144 SLVIADEPTSLLDGR 158
Cdd:COG5265 514 PILIFDEATSALDSR 528
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
1-216 |
7.38e-08 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 51.62 E-value: 7.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 1 MLLDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLA----DVVAGEVSVHGVDAVrdVKALR-RTVGFVFANPAAQMVm 74
Cdd:PRK10418 17 PLVHGVSLTLQRGRVlALVGGSGSGKSLTCAAALGILpagvRQTAGRVLLDGKPVA--PCALRgRKIATIMQNPRSAFN- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 75 ptvredvelTVKSLRDDAGRRLAKDDVAARVAAALEEHRLTALADRACL------SLSSGQAQRLAMCSVMTAGPSLVIA 148
Cdd:PRK10418 94 ---------PLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVlklypfEMSGGMLQRMMIALALLCEAPFIIA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 149 DEPTSLLDGRHRRIVADrlLAADPSAPDGFQLLLVTHDLE-LARACDE-AVWIHGGHVErTGPAEDVVEA 216
Cdd:PRK10418 165 DEPTTDLDVVAQARILD--LLESIVQKRALGMLLVTHDMGvVARLADDvAVMSHGRIVE-QGDVETLFNA 231
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
2-156 |
1.21e-07 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 50.73 E-value: 1.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLAD---VVAGEVSVHGVDavRDVKALRRTVGFVfanPAAQMVMP-- 75
Cdd:cd03234 22 ILNDVSLHVESGQVmAILGSSGSGKTTLLDAISGRVEgggTTSGQILFNGQP--RKPDQFQKCVAYV---RQDDILLPgl 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 76 TVREDVELTVKSLrddAGRRLAKDDVAARVAAALEEH-RLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSL 154
Cdd:cd03234 97 TVRETLTYTAILR---LPRKSSDAIRKKRVEDVLLRDlALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSG 173
|
..
gi 2158298083 155 LD 156
Cdd:cd03234 174 LD 175
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
15-216 |
1.43e-07 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 50.94 E-value: 1.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 15 VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD-AVRDVKALRRTVGFVFANPA---------AQMVMPTVREDVELt 84
Cdd:PRK15112 42 LAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPlHFGDYSYRSQRIRMIFQDPStslnprqriSQILDFPLRLNTDL- 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 85 vkslrdDAGRRLAKDDVAARVAAALEEHrltalADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRIVA 164
Cdd:PRK15112 121 ------EPEQREKQIIETLRQVGLLPDH-----ASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLI 189
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2158298083 165 DRLLaaDPSAPDGFQLLLVTHDLELAR-ACDEAVWIHGGHVERTGPAEDVVEA 216
Cdd:PRK15112 190 NLML--ELQEKQGISYIYVTQHLGMMKhISDQVLVMHQGEVVERGSTADVLAS 240
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
2-202 |
1.64e-07 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 50.10 E-value: 1.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAPRVAVI-GENGSGKSTLARAIAGLADVVAGEVSVHGVD-AVRDVKALRRTVGFVFANPAaqMVMPTVRE 79
Cdd:PRK10247 22 ILNNISFSLRAGEFKLItGPSGCGKSTLLKIVASLISPTSGTLLFEGEDiSTLKPEIYRQQVSYCAQTPT--LFGDTVYD 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 80 DVELTVKsLRDDAGRRlaKDDVAARVAAALEEHRLtalaDRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRH 159
Cdd:PRK10247 100 NLIFPWQ-IRNQQPDP--AIFLDDLERFALPDTIL----TKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESN 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2158298083 160 RRIVADRL--LAADpsapDGFQLLLVTHDLELARACDEAVWI--HGG 202
Cdd:PRK10247 173 KHNVNEIIhrYVRE----QNIAVLWVTHDKDEINHADKVITLqpHAG 215
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
2-212 |
1.74e-07 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 50.96 E-value: 1.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAP-RVAVIGENGSGKSTLARAIAGLADVVAGEVSVhgvdavrdvkalrrtvgfvfanPAAQ--MVMP--- 75
Cdd:COG4178 378 LLEDLSLSLKPGeRLLITGPSGSGKSTLLRAIAGLWPYGSGRIAR----------------------PAGArvLFLPqrp 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 76 -----TVREDV--ELTVKSLRDDAGRRLakddvaarvaaaLEEHRLTALADRacLS--------LSSGQAQRLAMCSVMT 140
Cdd:COG4178 436 ylplgTLREALlyPATAEAFSDAELREA------------LEAVGLGHLAER--LDeeadwdqvLSLGEQQRLAFARLLL 501
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2158298083 141 AGPSLVIADEPTSLLDGRHRRIVADRLLAADPSApdgfQLLLVTHDLELARACDEAVWIHGGHVERTGPAED 212
Cdd:COG4178 502 HKPDWLFLDEATSALDEENEAALYQLLREELPGT----TVISVGHRSTLAAFHDRVLELTGDGSWQLLPAEA 569
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
15-156 |
1.98e-07 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 51.03 E-value: 1.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 15 VAVIGENGSGKSTLARAIAGL--ADVVAGEVSVHGVDAVRDVkaLRRTvGFVFANpaaQMVMP--TVREDVELTV----- 85
Cdd:PLN03211 97 LAVLGPSGSGKSTLLNALAGRiqGNNFTGTILANNRKPTKQI--LKRT-GFVTQD---DILYPhlTVRETLVFCSllrlp 170
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2158298083 86 KSLRDDAGRRLAKDDVAARVAAALEEhrlTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLD 156
Cdd:PLN03211 171 KSLTKQEKILVAESVISELGLTKCEN---TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 238
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
14-214 |
2.62e-07 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 49.58 E-value: 2.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 14 RVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDVKAlRRTVGFVFA--NPAAQMvmpTVREDVELTVK-SLRD 90
Cdd:PRK10771 27 RVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS-RRPVSMLFQenNLFSHL---TVAQNIGLGLNpGLKL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 91 DAGRRlakddvaARVAAALEEHRLTALADRACLSLSSGQAQR--LAMCSVMTAgPSLVIaDEPTSLLDG--RHRRIVadr 166
Cdd:PRK10771 103 NAAQR-------EKLHAIARQMGIEDLLARLPGQLSGGQRQRvaLARCLVREQ-PILLL-DEPFSALDPalRQEMLT--- 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2158298083 167 lLAADPSAPDGFQLLLVTHDLE-LARACDEAVWIHGGHVERTGPAEDVV 214
Cdd:PRK10771 171 -LVSQVCQERQLTLLMVSHSLEdAARIAPRSLVVADGRIAWDGPTDELL 218
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
7-221 |
4.89e-07 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 49.04 E-value: 4.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 7 DLTLTAPR---VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGvdavrDVKALRRTVGFvfanpAAQMvmpTVREDVEL 83
Cdd:PRK13546 42 DISLKAYEgdvIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-----EVSVIAISAGL-----SGQL---TGIENIEF 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 84 tvKSLRDDAGRRLAKDDVAARvaaaLEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRIV 163
Cdd:PRK13546 109 --KMLCMGFKRKEIKAMTPKI----IEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKC 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2158298083 164 ADRLLAADPSAPDGFqllLVTHDLELARA-CDEAVWIHGGHVERTGPAEDVVEAYERFL 221
Cdd:PRK13546 183 LDKIYEFKEQNKTIF---FVSHNLGQVRQfCTKIAWIEGGKLKDYGELDDVLPKYEAFL 238
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
3-215 |
5.75e-07 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 48.69 E-value: 5.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVR---DVKAlRRTVGF------VFANPaaqm 72
Cdd:cd03218 16 VNGVSLSVKQGEiVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKlpmHKRA-RLGIGYlpqeasIFRKL---- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 73 vmpTVREDVELTVKSLRDDAGRRLAKDDVAarvaaaLEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPT 152
Cdd:cd03218 91 ---TVEENILAVLEIRGLSKKEREEKLEEL------LEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPF 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2158298083 153 SLLD----GRHRRIVA---DRllaadpsapdGFQLLLVTHDL-ELARACDEAVWIHGGHVERTGPAEDVVE 215
Cdd:cd03218 162 AGVDpiavQDIQKIIKilkDR----------GIGVLITDHNVrETLSITDRAYIIYEGKVLAEGTPEEIAA 222
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
9-208 |
5.77e-07 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 48.37 E-value: 5.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 9 TLTAPRVAVIGENGSGKSTLARAIagladVVA--GEVSVHGVDAVRDVKALRRTvgfvfanpaaqmvmpTVREDVELTVK 86
Cdd:cd03240 19 EFFSPLTLIVGQNGAGKTTIIEAL-----KYAltGELPPNSKGGAHDPKLIREG---------------EVRAQVKLAFE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 87 SLRDD---AGRRLAKDDVAA-----RVAAALEEHRltalaDRaclsLSSGQ------AQRLAMCSVMTAGPSLVIADEPT 152
Cdd:cd03240 79 NANGKkytITRSLAILENVIfchqgESNWPLLDMR-----GR----CSGGEkvlaslIIRLALAETFGSNCGILALDEPT 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2158298083 153 SLLDGRHRRIVADRLLAADpSAPDGFQLLLVTHDLELARACDEAVwihggHVERTG 208
Cdd:cd03240 150 TNLDEENIEESLAEIIEER-KSQKNFQLIVITHDEELVDAADHIY-----RVEKDG 199
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
15-192 |
7.90e-07 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 48.03 E-value: 7.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 15 VAVIGENGSGKSTLARAIAGLA--DVVAGEVSVHGVDAVRDVkalrrtvgfvfanpaaqmvmptvredveltvkSLRDDA 92
Cdd:COG2401 59 VLIVGASGSGKSTLLRLLAGALkgTPVAGCVDVPDNQFGREA--------------------------------SLIDAI 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 93 GRRLAKDDVAArvaaaleehRLTA--LAD----RACLS-LSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRIVAD 165
Cdd:COG2401 107 GRKGDFKDAVE---------LLNAvgLSDavlwLRRFKeLSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRQTAKRVAR 177
|
170 180
....*....|....*....|....*..
gi 2158298083 166 RLLAADPSApdGFQLLLVTHDLELARA 192
Cdd:COG2401 178 NLQKLARRA--GITLVVATHHYDVIDD 202
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
1-221 |
8.53e-07 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 49.01 E-value: 8.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 1 MLLDGVDLTLT-APRVAVIGENGSGKSTLARAIAGLADVVAGEVSVhgvdavrdVKALRrtVGFVfanpaAQMVMPTVRE 79
Cdd:PRK10636 326 IILDSIKLNLVpGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL--------AKGIK--LGYF-----AQHQLEFLRA 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 80 DvELTVKSLRDDAGRRLAKDDVAARVAAALEEHRLTALADRaclsLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRH 159
Cdd:PRK10636 391 D-ESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRR----FSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDM 465
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2158298083 160 RRIVADRLLAADPSapdgfqLLLVTHDLELARA-CDEAVWIHGGHVErtgPAEDVVEAYERFL 221
Cdd:PRK10636 466 RQALTEALIDFEGA------LVVVSHDRHLLRStTDDLYLVHDGKVE---PFDGDLEDYQQWL 519
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
3-190 |
9.14e-07 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 49.24 E-value: 9.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDVKALRRTVGFVfanPAAQMVMP--TVRE 79
Cdd:TIGR01257 946 VDRLNITFYENQItAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMC---PQHNILFHhlTVAE 1022
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 80 DVeLTVKSLRddaGRrlAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRH 159
Cdd:TIGR01257 1023 HI-LFYAQLK---GR--SWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYS 1096
|
170 180 190
....*....|....*....|....*....|.
gi 2158298083 160 RRIVADRLLaadpSAPDGFQLLLVTHDLELA 190
Cdd:TIGR01257 1097 RRSIWDLLL----KYRSGRTIIMSTHHMDEA 1123
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
17-222 |
9.62e-07 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 48.88 E-value: 9.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 17 VIGENGSGKSTLARAIAGLADVVAGEVSVHGVD-------AVRDVKalRRTVGFVFANPAaqmVMP--TVREDVELtvks 87
Cdd:PRK10070 59 IMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDiakisdaELREVR--RKKIAMVFQSFA---LMPhmTVLDNTAF---- 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 88 lrddaGRRLAKDDVAARVAAALEEHRLTALADRA---CLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRIVA 164
Cdd:PRK10070 130 -----GMELAGINAEERREKALDALRQVGLENYAhsyPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQ 204
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2158298083 165 DRLLAAdpSAPDGFQLLLVTHDLELA-RACDEAVWIHGGHVERTG--------PAEDVVEAYERFLD 222
Cdd:PRK10070 205 DELVKL--QAKHQRTIVFISHDLDEAmRIGDRIAIMQNGEVVQVGtpdeilnnPANDYVRTFFRGVD 269
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
16-167 |
1.19e-06 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 48.47 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 16 AVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVR-DVKALRRTVGFVFANPAAQMVMP-------TVREDVELTVKs 87
Cdd:PRK10938 33 AFVGANGSGKSALARALAGELPLLSGERQSQFSHITRlSFEQLQKLVSDEWQRNNTDMLSPgeddtgrTTAEIIQDEVK- 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 88 lrdDAGR--RLAkddvaarvaaalEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRIVAD 165
Cdd:PRK10938 112 ---DPARceQLA------------QQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAE 176
|
..
gi 2158298083 166 RL 167
Cdd:PRK10938 177 LL 178
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
55-190 |
1.21e-06 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 48.19 E-value: 1.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 55 KALRRTVGFVFANPAAQMVMPTVREDVELTVKSLrdDAGRRLAKDDVAARvaaaLEEHRLTALADRACLSLSSGQAQRLA 134
Cdd:NF000106 81 RALRRTIG*HRPVR*GRRESFSGRENLYMIGR*L--DLSRKDARARADEL----LERFSLTEAAGRAAAKYSGGMRRRLD 154
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2158298083 135 MCSVMTAGPSLVIADEPTSLLDGRHRRIVADRLLAAdpsAPDGFQLLLVTHDLELA 190
Cdd:NF000106 155 LAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSM---VRDGATVLLTTQYMEEA 207
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
14-156 |
1.89e-06 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 46.38 E-value: 1.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 14 RVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGvdavrdvkalRRTVGFVFANPaaqmVMPTVredveltvkSLRDdag 93
Cdd:cd03223 29 RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPE----------GEDLLFLPQRP----YLPLG---------TLRE--- 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2158298083 94 rrlakddvaarvaaaleehrltALA---DRAclsLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLD 156
Cdd:cd03223 83 ----------------------QLIypwDDV---LSGGEQQRLAFARLLLHKPKFVFLDEATSALD 123
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
14-156 |
1.95e-06 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 47.02 E-value: 1.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 14 RVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD-AVRDVKALRRTVGFVFANPAaqMVMPTVR---------EDVEL 83
Cdd:cd03369 36 KIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDiSTIPLEDLRSSLTIIPQDPT--LFSGTIRsnldpfdeySDEEI 113
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2158298083 84 tVKSLRDDAGRrlakddvaarvaaaleehrltaladracLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLD 156
Cdd:cd03369 114 -YGALRVSEGG----------------------------LNLSQGQRQLLCLARALLKRPRVLVLDEATASID 157
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
7-220 |
2.28e-06 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 47.79 E-value: 2.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 7 DLTLTAPR---VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGvdavRDV-----KALRRTVGFVFANPAaqMVMPTVR 78
Cdd:PRK10790 359 NINLSVPSrgfVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDG----RPLsslshSVLRQGVAMVQQDPV--VLADTFL 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 79 EDVELTvKSLRDDAGRRLAKDDVAARVAAALEEHRLTALADRAClSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGR 158
Cdd:PRK10790 433 ANVTLG-RDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGN-NLSVGQKQLLALARVLVQTPQILILDEATANIDSG 510
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2158298083 159 HRRIVADRLLAADPSApdgfQLLLVTHDLELARACDEAVWIHGGHVERTGPAEDVVEAYERF 220
Cdd:PRK10790 511 TEQAIQQALAAVREHT----TLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRY 568
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-81 |
4.50e-06 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 46.97 E-value: 4.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 1 MLLDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDVKALRRTVGfVFANPAAQMVMP--TV 77
Cdd:PRK15439 25 EVLKGIDFTLHAGEVhALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG-IYLVPQEPLLFPnlSV 103
|
....
gi 2158298083 78 REDV 81
Cdd:PRK15439 104 KENI 107
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
15-164 |
5.36e-06 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 45.86 E-value: 5.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 15 VAVIGENGSGKSTLARAIAGLADVVAGevsvhgvdavrDVKALRRTVGFvfaNPaaQMVMPtvreDVELTVKSLRDDAGR 94
Cdd:cd03237 28 IGILGPNGIGKTTFIKMLAGVLKPDEG-----------DIEIELDTVSY---KP--QYIKA----DYEGTVRDLLSSITK 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 95 RlaKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRIVA 164
Cdd:cd03237 88 D--FYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMAS 155
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
15-156 |
6.29e-06 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 46.49 E-value: 6.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 15 VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDaVRDV--KALRRTVGFVFANPAaqMVMPTVREDVELTVKSLRDDA 92
Cdd:PRK13657 364 VAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTD-IRTVtrASLRRNIAVVFQDAG--LFNRSIEDNIRVGRPDATDEE 440
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2158298083 93 GRRLAKDDVAARVAAALEEHRLTALADRAcLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLD 156
Cdd:PRK13657 441 MRAAAERAQAHDFIERKPDGYDTVVGERG-RQLSGGERQRLAIARALLKDPPILILDEATSALD 503
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
14-191 |
6.89e-06 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 46.47 E-value: 6.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 14 RVAVIGENGSGKSTLARAIAGLADVVAGEVsvhgvdavrdVKALRRTVGFVFANPAaqmVMP--TVREDVELTVKSLRdD 91
Cdd:TIGR03719 33 KIGVLGLNGAGKSTLLRIMAGVDKDFNGEA----------RPQPGIKVGYLPQEPQ---LDPtkTVRENVEEGVAEIK-D 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 92 AGRRL-----------AKDDVAARVAAALEE-------HRLTALADRACLSL------------SSGQAQRLAMCSVMTA 141
Cdd:TIGR03719 99 ALDRFneisakyaepdADFDKLAAEQAELQEiidaadaWDLDSQLEIAMDALrcppwdadvtklSGGERRRVALCRLLLS 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2158298083 142 GPSLVIADEPTSLLDGRHrriVA--DRLLAADPSApdgfqLLLVTHD-----------LELAR 191
Cdd:TIGR03719 179 KPDMLLLDEPTNHLDAES---VAwlERHLQEYPGT-----VVAVTHDryfldnvagwiLELDR 233
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
3-230 |
8.11e-06 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 45.97 E-value: 8.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDVKALRRT--VGFVFANPAAQMVMP-TVR 78
Cdd:TIGR02633 17 LDGIDLEVRPGEcVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTerAGIVIIHQELTLVPElSVA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 79 EDV----ELTVKslrddaGRRLAKDDVAARVAAALEEHRLTALAD-RACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTS 153
Cdd:TIGR02633 97 ENIflgnEITLP------GGRMAYNAMYLRAKNLLRELQLDADNVtRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSS 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2158298083 154 LLDGRHRRIVADrlLAADPSApDGFQLLLVTHDL-ELARACDEAVWIHGGHVERTGPAEDVVEayERFLDHAVAAELR 230
Cdd:TIGR02633 171 SLTEKETEILLD--IIRDLKA-HGVACVYISHKLnEVKAVCDTICVIRDGQHVATKDMSTMSE--DDIITMMVGREIT 243
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
18-191 |
1.31e-05 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 45.50 E-value: 1.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 18 IGENGSGKSTLARAIAGLADVVAGEVSVHG--VDAvRDVkALRRTVGFvfanpaaqmvMP---------TVREDVELTVK 86
Cdd:NF033858 298 LGSNGCGKSTTMKMLTGLLPASEGEAWLFGqpVDA-GDI-ATRRRVGY----------MSqafslygelTVRQNLELHAR 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 87 SLR---DDAGRRLAKDdvaarvaaaLEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSlldgrhrriv 163
Cdd:NF033858 366 LFHlpaAEIAARVAEM---------LERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTS---------- 426
|
170 180
....*....|....*....|....*...
gi 2158298083 164 adrllAADPSAPDGFQLLLVthdlELAR 191
Cdd:NF033858 427 -----GVDPVARDMFWRLLI----ELSR 445
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
15-220 |
1.43e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 45.74 E-value: 1.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 15 VAVIGENGSGKSTLARAIAGladvvagEVSvHGVDAVRDVkalRRTVGFVfanPAAQMVM-PTVREDVELTVKSLRDDAG 93
Cdd:PLN03232 646 VAIVGGTGEGKTSLISAMLG-------ELS-HAETSSVVI---RGSVAYV---PQVSWIFnATVRENILFGSDFESERYW 711
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 94 RRLaKDDVAARVAAALEEHRLTALADRAcLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRIVADRLLAADPS 173
Cdd:PLN03232 712 RAI-DVTALQHDLDLLPGRDLTEIGERG-VNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELK 789
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2158298083 174 apdGFQLLLVTHDLELARACDEAVWIHGGHVERTGPAEDVVEAYERF 220
Cdd:PLN03232 790 ---GKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLF 833
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
16-220 |
1.48e-05 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 45.61 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 16 AVIGENGSGKSTLARAIAG--LADVVAGEVSVHGVDAVRDVKAlrRTVGFVFANP--AAQMvmpTVREdveltvkSLRDD 91
Cdd:PLN03140 910 ALMGVSGAGKTTLMDVLAGrkTGGYIEGDIRISGFPKKQETFA--RISGYCEQNDihSPQV---TVRE-------SLIYS 977
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 92 AGRRLAKDDVAARVAAALEEH----RLTALADR-----ACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRI 162
Cdd:PLN03140 978 AFLRLPKEVSKEEKMMFVDEVmelvELDNLKDAivglpGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1057
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2158298083 163 VadrLLAADPSAPDGFQLLLVTH--DLELARACDEAVWI-HGGHVERTGP----AEDVVEAYERF 220
Cdd:PLN03140 1058 V---MRTVRNTVDTGRTVVCTIHqpSIDIFEAFDELLLMkRGGQVIYSGPlgrnSHKIIEYFEAI 1119
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
3-152 |
1.56e-05 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 45.50 E-value: 1.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDaVRDvKALRRTVGFVFAnpaaqmVMP------ 75
Cdd:NF033858 17 LDDVSLDIPAGCmVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGD-MAD-ARHRRAVCPRIA------YMPqglgkn 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 76 -----TVREDVELTVKSLRDDAGRRLAKddvaarVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADE 150
Cdd:NF033858 89 lyptlSVFENLDFFGRLFGQDAAERRRR------IDELLRATGLAPFADRPAGKLSGGMKQKLGLCCALIHDPDLLILDE 162
|
..
gi 2158298083 151 PT 152
Cdd:NF033858 163 PT 164
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
4-217 |
2.23e-05 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 44.21 E-value: 2.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 4 DGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHGvdavrdvKALRRTVGFVFANPAAQMVMPTVREDVE 82
Cdd:PRK11300 22 NNVNLEVREQEIvSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRG-------QHIEGLPGHQIARMGVVRTFQHVRLFRE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 83 LTV-----------------KSLRDDAGRRLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSL 145
Cdd:PRK11300 95 MTVienllvaqhqqlktglfSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEI 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2158298083 146 VIADEPTSLLDGRHRRIVADrlLAADPSAPDGFQLLLVTHDLELARACDEAVWI--HGGHVERTGPAE-----DVVEAY 217
Cdd:PRK11300 175 LMLDEPAAGLNPKETKELDE--LIAELRNEHNVTVLLIEHDMKLVMGISDRIYVvnQGTPLANGTPEEirnnpDVIKAY 251
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
128-202 |
2.64e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.67 E-value: 2.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 128 GQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRIVAD---RLLAADPsapdgfQLLLVTHDLELARACDEAVWI--HGG 202
Cdd:PRK03918 798 GLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDimeRYLRKIP------QVIIVSHDEELKDAADYVIRVslEGG 871
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
1-43 |
2.70e-05 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 44.50 E-value: 2.70e-05
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 2158298083 1 MLLDGVDLTLTA-PRVAVIGENGSGKSTLARAIAGLADVVAGEV 43
Cdd:PRK15064 333 PLFKNLNLLLEAgERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
3-156 |
3.47e-05 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 43.25 E-value: 3.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTA-PRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD-AVRDVKALRRTVGFVFANPaaQMVMPTVRED 80
Cdd:cd03244 20 LKNISFSIKPgEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDiSKIGLHDLRSRISIIPQDP--VLFSGTIRSN 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2158298083 81 veLTVKSLRDDAGRRLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLD 156
Cdd:cd03244 98 --LDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVD 171
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
1-58 |
4.17e-05 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 42.87 E-value: 4.17e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 2158298083 1 MLLDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGvdavRDVKALR 58
Cdd:PRK13538 15 ILFSGLSFTLNAGElVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQG----EPIRRQR 69
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
15-83 |
4.18e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 42.36 E-value: 4.18e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2158298083 15 VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDVKALRRTVGFVFANPAAQMVMPTVREDVEL 83
Cdd:smart00382 5 ILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALAL 73
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
14-211 |
4.38e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 44.20 E-value: 4.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 14 RVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVR-DVKALRRTVGFVFANPAaqMVMPTVREDVELTvkSLRDDA 92
Cdd:PLN03232 1264 KVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKfGLTDLRRVLSIIPQSPV--LFSGTVRFNIDPF--SEHNDA 1339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 93 GRRLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRIVADRLLAADP 172
Cdd:PLN03232 1340 DLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFK 1419
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2158298083 173 SApdgfQLLLVTHDLELARACDEAVWIHGGHV-ERTGPAE 211
Cdd:PLN03232 1420 SC----TMLVIAHRLNTIIDCDKILVLSSGQVlEYDSPQE 1455
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
14-213 |
4.96e-05 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 43.29 E-value: 4.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 14 RVAVIGENGSGKSTLARAIAGLADvVAGEVSVHGVDAVR-DVKALRRTVGFVFANPAAQMVMP------------TVRED 80
Cdd:COG4138 24 LIHLIGPNGAGKSTLLARMAGLLP-GQGEILLNGRPLSDwSAAELARHRAYLSQQQSPPFAMPvfqylalhqpagASSEA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 81 VELTVKSLrddagrrlakddvaarvaaaLEEHRLTALADRACLSLSSGQAQRLAMCSVM-----TAGPS--LVIADEPTS 153
Cdd:COG4138 103 VEQLLAQL--------------------AEALGLEDKLSRPLTQLSGGEWQRVRLAAVLlqvwpTINPEgqLLLLDEPMN 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2158298083 154 LLDGRHRRIVaDRLLAADPSApdGFQLLLVTHDLELA-RACDEAVWIHGGHVERTGPAEDV 213
Cdd:COG4138 163 SLDVAQQAAL-DRLLRELCQQ--GITVVMSSHDLNHTlRHADRVWLLKQGKLVASGETAEV 220
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
1-61 |
5.11e-05 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 43.77 E-value: 5.11e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2158298083 1 MLLDgvDLTLTAPR---VAVIGENGSGKSTLARAIAGLADVVAGEVSVhG-------VDAVRDVKALRRTV 61
Cdd:TIGR03719 336 LLID--DLSFKLPPggiVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI-GetvklayVDQSRDALDPNKTV 403
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
15-212 |
7.21e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 43.57 E-value: 7.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 15 VAVIGENGSGKSTLARAIAG-LADVVAGEVSVHGvdavrdvkalrrTVGFVfanPAAQMVM-PTVREDV----------- 81
Cdd:PLN03130 646 VAIVGSTGEGKTSLISAMLGeLPPRSDASVVIRG------------TVAYV---PQVSWIFnATVRDNIlfgspfdpery 710
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 82 --ELTVKSLRDDagrrlakddvaarvAAALEEHRLTALADRAcLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRH 159
Cdd:PLN03130 711 erAIDVTALQHD--------------LDLLPGGDLTEIGERG-VNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHV 775
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2158298083 160 RRIVADRLLAADPSapdGFQLLLVTHDLELARACDEAVWIHGGHVERTGPAED 212
Cdd:PLN03130 776 GRQVFDKCIKDELR---GKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEE 825
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
2-49 |
1.15e-04 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 42.09 E-value: 1.15e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 2158298083 2 LLDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLAD--VVAGEVSVHGVD 49
Cdd:PRK09580 16 ILRGLNLEVRPGEVhAIMGPNGSGKSTLSATLAGREDyeVTGGTVEFKGKD 66
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
1-45 |
1.21e-04 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 42.41 E-value: 1.21e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 2158298083 1 MLLDgvDLTLTAPR---VAVIGENGSGKSTLARAIAGLADVVAGEVSV 45
Cdd:PRK11819 338 LLID--DLSFSLPPggiVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI 383
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
2-34 |
1.39e-04 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 41.94 E-value: 1.39e-04
10 20 30
....*....|....*....|....*....|....
gi 2158298083 2 LLDGVDLTLTAPRV-AVIGENGSGKSTLARAIAG 34
Cdd:CHL00131 22 ILKGLNLSINKGEIhAIMGPNGSGKSTLSKVIAG 55
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
6-168 |
1.83e-04 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 41.88 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 6 VDLTLT-APRVAVIGENGSGKSTLARAIAGLADVVAGEVSVHG--VDAvRDVKALRRTVGFVFA---------NPAAQMV 73
Cdd:PRK10522 342 INLTIKrGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGkpVTA-EQPEDYRKLFSAVFTdfhlfdqllGPEGKPA 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 74 MPtvrEDVELTVKSLrdDAGRRLakddvaarvaaALEEHRLTAladracLSLSSGQAQRLAMCSVMTAGPSLVIADEPTS 153
Cdd:PRK10522 421 NP---ALVEKWLERL--KMAHKL-----------ELEDGRISN------LKLSKGQKKRLALLLALAEERDILLLDEWAA 478
|
170
....*....|....*
gi 2158298083 154 LLDGRHRRIVADRLL 168
Cdd:PRK10522 479 DQDPHFRREFYQVLL 493
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
2-221 |
1.97e-04 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 41.25 E-value: 1.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVsvhgvdaVRDVKaLRrtVGFVfanPAAQMVMPTvred 80
Cdd:PRK09544 19 VLSDVSLELKPGKIlTLLGPNGAGKSTLVRVVLGLVAPDEGVI-------KRNGK-LR--IGYV---PQKLYLDTT---- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 81 VELTVKSLrddagRRLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHR 160
Cdd:PRK09544 82 LPLTVNRF-----LRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQ 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2158298083 161 RIVADrlLAADPSAPDGFQLLLVTHDLELARACDEAVWIHGGHVERTGPAEdVVEAYERFL 221
Cdd:PRK09544 157 VALYD--LIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNHHICCSGTPE-VVSLHPEFI 214
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
115-193 |
2.06e-04 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 41.92 E-value: 2.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 115 TALADRACLSLSSGQaQRLAMCS-VMTAGPSLVIADEPTSLLDGRHRRIV---ADRLLAADPSapdgfQLLLVTHDLELA 190
Cdd:PRK10938 392 KRTADAPFHSLSWGQ-QRLALIVrALVKHPTLLILDEPLQGLDPLNRQLVrrfVDVLISEGET-----QLLFVSHHAEDA 465
|
...
gi 2158298083 191 RAC 193
Cdd:PRK10938 466 PAC 468
|
|
| COG1106 |
COG1106 |
ATPase/GTPase, AAA15 family [General function prediction only]; |
4-39 |
2.51e-04 |
|
ATPase/GTPase, AAA15 family [General function prediction only];
Pssm-ID: 440723 [Multi-domain] Cd Length: 330 Bit Score: 41.18 E-value: 2.51e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 2158298083 4 DGVDLTLTA-----PRVAVI-GENGSGKSTLARAIAGLADVV 39
Cdd:COG1106 15 DELTLSMVAsglrlLRVNLIyGANASGKSNLLEALYFLRNLV 56
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
4-187 |
2.64e-04 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 40.76 E-value: 2.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 4 DGVDLTLTAPRVAVIGENGSGKSTLARAIA---------------GLADVVAGEVSV-----HGVDAVRDVKALRRTVGF 63
Cdd:COG0419 15 DTETIDFDDGLNLIVGPNGAGKSTILEAIRyalygkarsrsklrsDLINVGSEEASVelefeHGGKRYRIERRQGEFAEF 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 64 VFANPA------AQMVMPTVREDVELTVKSLRDDAGRRLAKddvaARVAAALEEHRLTALAD-RACLSLSSGQAQRLAMC 136
Cdd:COG0419 95 LEAKPSerkealKRLLGLEIYEELKERLKELEEALESALEE----LAELQKLKQEILAQLSGlDPIETLSGGERLRLALA 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 2158298083 137 SVMtagpSLVIaDepTSLLDGRHRRIVADRLLaadpsapdgfQLLLVTHDL 187
Cdd:COG0419 171 DLL----SLIL-D--FGSLDEERLERLLDALE----------ELAIITHVI 204
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
3-194 |
3.16e-04 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 41.05 E-value: 3.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAvrdvkalrrtvgfVFANPAA----------- 70
Cdd:PRK11288 20 LDDISFDCRAGQVhALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEM-------------RFASTTAalaagvaiiyq 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 71 --QMVmP--TVREDVEL----------TVKSLRDDAGRRLAKDDVAARVAAALEEhrltaladraclsLSSGQAQRLAMC 136
Cdd:PRK11288 87 elHLV-PemTVAENLYLgqlphkggivNRRLLNYEAREQLEHLGVDIDPDTPLKY-------------LSIGQRQMVEIA 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2158298083 137 SVMTAGPSlVIA-DEPTSLLDGRHRRI---VADRLLAadpsapDGFQLLLVTHDL-ELARACD 194
Cdd:PRK11288 153 KALARNAR-VIAfDEPTSSLSAREIEQlfrVIRELRA------EGRVILYVSHRMeEIFALCD 208
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
6-48 |
3.84e-04 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 40.94 E-value: 3.84e-04
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 2158298083 6 VDLTLTAPRVA-VIGENGSGKSTLARAIAGLADVVAGEVSVHGV 48
Cdd:COG4615 351 IDLTIRRGELVfIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQ 394
|
|
| COG3910 |
COG3910 |
Predicted ATPase [General function prediction only]; |
3-33 |
4.17e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443116 [Multi-domain] Cd Length: 239 Bit Score: 40.13 E-value: 4.17e-04
10 20 30
....*....|....*....|....*....|..
gi 2158298083 3 LDGVDLTltaPRVAVI-GENGSGKSTLARAIA 33
Cdd:COG3910 30 LEGLEFH---PPVTFFvGENGSGKSTLLEAIA 58
|
|
| CoaE |
COG0237 |
Dephospho-CoA kinase [Coenzyme transport and metabolism]; Dephospho-CoA kinase is part of the ... |
14-92 |
4.67e-04 |
|
Dephospho-CoA kinase [Coenzyme transport and metabolism]; Dephospho-CoA kinase is part of the Pathway/BioSystem: Pantothenate/CoA biosynthesis
Pssm-ID: 440007 Cd Length: 193 Bit Score: 39.66 E-value: 4.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 14 RVAVIGENGSGKSTLARAIAGL------ADVVAGEVSVHGVDAVRDVKAL-------------RRTVG-FVFANPAA--- 70
Cdd:COG0237 3 IIGLTGGIGSGKSTVARMFAELgapvidADAIARELVEPGGPALAAIVEAfgeeildadgsldRKALAeIVFADPEAlkk 82
|
90 100
....*....|....*....|....
gi 2158298083 71 --QMVMPTVREDVELTVKSLRDDA 92
Cdd:COG0237 83 leAIVHPLVREEIERRLAAARGAP 106
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
124-199 |
5.76e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 40.66 E-value: 5.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 124 SLSSGQ------AQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRIVADRLLAADPSAPDGFQLLLVTHDLELARACDEAV 197
Cdd:PRK01156 801 SLSGGEktavafALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVADVAY 880
|
..
gi 2158298083 198 WI 199
Cdd:PRK01156 881 EV 882
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
17-156 |
6.22e-04 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 39.83 E-value: 6.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 17 VIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDVKAlrRTVGFVFANPAAQMVMPTVRedvelTVKSLRDDAGRRL 96
Cdd:PRK13543 42 VQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRS--RFMAYLGHLPGLKADLSTLE-----NLHFLCGLHGRRA 114
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 97 AKDDVAARVAAALEEHrltalADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLD 156
Cdd:PRK13543 115 KQMPGSALAIVGLAGY-----EDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
22-152 |
6.41e-04 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 40.39 E-value: 6.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 22 GSGKSTLARAIAGLADVVAGEVSVHGVD-AVRDVK-ALRRTVGFVFANPAAQMVMP--TVREDVELTvkSLRDDA-GRRL 96
Cdd:COG1129 288 GAGRTELARALFGADPADSGEIRLDGKPvRIRSPRdAIRAGIAYVPEDRKGEGLVLdlSIRENITLA--SLDRLSrGGLL 365
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 2158298083 97 AKDDVAARVAAALEEHRL-TALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPT 152
Cdd:COG1129 366 DRRRERALAEEYIKRLRIkTPSPEQPVGNLSGGNQQKVVLAKWLATDPKVLILDEPT 422
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
6-163 |
7.05e-04 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 40.40 E-value: 7.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 6 VDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVRDV--KALRRTVGFVFANPAaqMVMPTVREDVE 82
Cdd:PTZ00265 404 LNFTLTEGKTyAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDInlKWWRSKIGVVSQDPL--LFSNSIKNNIK 481
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 83 LTVKSLRD-----------------DAGRR-------------LAKDDVAARVAAALEEHR------------------- 113
Cdd:PTZ00265 482 YSLYSLKDlealsnyynedgndsqeNKNKRnscrakcagdlndMSNTTDSNELIEMRKNYQtikdsevvdvskkvlihdf 561
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2158298083 114 LTALADR-------ACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHRRIV 163
Cdd:PTZ00265 562 VSALPDKyetlvgsNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLV 618
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
3-213 |
7.47e-04 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 40.01 E-value: 7.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVR-DVKALRRT-VGFVFANPAAQ-MVMP-TV 77
Cdd:COG3845 274 LKDVSLEVRAGEiLGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGlSPRERRRLgVAYIPEDRLGRgLVPDmSV 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 78 REDveLTVKSLRDDA---GRRLAKDDVAARVAAALEEHRL-TALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTS 153
Cdd:COG3845 354 AEN--LILGRYRRPPfsrGGFLDRKAIRAFAEELIEEFDVrTPGPDTPARSLSGGNQQKVILARELSRDPKLLIAAQPTR 431
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2158298083 154 LLDGR-----HRRIVAdrllAADpsapDGFQLLLVTHDL-ELARACDE-AVwIHGGHVERTGPAEDV 213
Cdd:COG3845 432 GLDVGaiefiHQRLLE----LRD----AGAAVLLISEDLdEILALSDRiAV-MYEGRIVGEVPAAEA 489
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
15-214 |
8.86e-04 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 39.49 E-value: 8.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 15 VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGvdavRDVKAL------RRTVGFVfANPAAQMVMPTVREDVeLTVKSL 88
Cdd:PRK10895 32 VGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDD----EDISLLplharaRRGIGYL-PQEASIFRRLSVYDNL-MAVLQI 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 89 RDDagrrLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLLDGRHrriVADRLL 168
Cdd:PRK10895 106 RDD----LSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIS---VIDIKR 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2158298083 169 AADPSAPDGFQLLLVTHDL-ELARACDEAVWIHGGHVERTGPAEDVV 214
Cdd:PRK10895 179 IIEHLRDSGLGVLITDHNVrETLAVCERAYIVSQGHLIAHGTPTEIL 225
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
1-158 |
9.16e-04 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 40.09 E-value: 9.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 1 MLLDGVDL-----TLTAprvaVIGENGSGKSTLARAIAGLAD---VVAGEVSVHGVDavRDvKALRRTVGFVFANPaAQM 72
Cdd:TIGR00956 777 VILNNVDGwvkpgTLTA----LMGASGAGKTTLLNVLAERVTtgvITGGDRLVNGRP--LD-SSFQRSIGYVQQQD-LHL 848
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 73 VMPTVREdveltvkSLRDDAGRRLAKDDVAARVAAALEE----HRLTALADR----ACLSLSSGQAQRLAMCSVMTAGP- 143
Cdd:TIGR00956 849 PTSTVRE-------SLRFSAYLRQPKSVSKSEKMEYVEEviklLEMESYADAvvgvPGEGLNVEQRKRLTIGVELVAKPk 921
|
170
....*....|....*
gi 2158298083 144 SLVIADEPTSLLDGR 158
Cdd:TIGR00956 922 LLLFLDEPTSGLDSQ 936
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
15-225 |
1.21e-03 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 39.45 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 15 VAVIGENGSGKSTLARAIAGLADVVAGEVSVHG---------VDAVRDVKA--LRRTVG----FVFANPAAQM-VMPTVR 78
Cdd:PRK10261 45 LAIVGESGSGKSVTALALMRLLEQAGGLVQCDKmllrrrsrqVIELSEQSAaqMRHVRGadmaMIFQEPMTSLnPVFTVG 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 79 EDVELTVKsLRDDAGRRLAkddvAARVAAALEEHRL---TALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEPTSLL 155
Cdd:PRK10261 125 EQIAESIR-LHQGASREEA----MVEAKRMLDQVRIpeaQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTAL 199
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2158298083 156 DGRHRRIVAD--RLLAADPSapdgFQLLLVTHDLE-LARACDEAVWIHGGHVERTGPAEDVVEA----YERFLDHAV 225
Cdd:PRK10261 200 DVTIQAQILQliKVLQKEMS----MGVIFITHDMGvVAEIADRVLVMYQGEAVETGSVEQIFHApqhpYTRALLAAV 272
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
2-214 |
1.33e-03 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 39.04 E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 2 LLDGVDLTLTAPRV-AVIGENGSGKSTLARAIAG--------LADVVAGEVSVHG-----VDAVRdvKALRRTVGFVFAN 67
Cdd:PRK13547 16 ILRDLSLRIEPGRVtALLGRNGAGKSTLLKALAGdltgggapRGARVTGDVTLNGeplaaIDAPR--LARLRAVLPQAAQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 68 PAAQMvmpTVREDVELTVKSLRDDAGRrlAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVM-------- 139
Cdd:PRK13547 94 PAFAF---SAREIVLLGRYPHARRAGA--LTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLaqlwpphd 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2158298083 140 -TAGPSLVIADEPTSLLDGRHRRivadRLLAADPSAPDGFQL--LLVTHDLEL-ARACDEAVWIHGGHVERTGPAEDVV 214
Cdd:PRK13547 169 aAQPPRYLLLDEPTAALDLAHQH----RLLDTVRRLARDWNLgvLAIVHDPNLaARHADRIAMLADGAIVAHGAPADVL 243
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
119-215 |
1.35e-03 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 39.61 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 119 DRACLSLSSGQAQRLAMCSVMTAGPS--LVIADEPTSlldGRHRRIvADRLLAADPSAPD-GFQLLLVTHDLELARACDE 195
Cdd:TIGR00630 483 SRAAGTLSGGEAQRIRLATQIGSGLTgvLYVLDEPSI---GLHQRD-NRRLINTLKRLRDlGNTLIVVEHDEDTIRAADY 558
|
90 100
....*....|....*....|....*.
gi 2158298083 196 AVWI------HGGHVERTGPAEDVVE 215
Cdd:TIGR00630 559 VIDIgpgageHGGEVVASGTPEEILA 584
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
4-206 |
1.55e-03 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 39.30 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 4 DGVDLTLTAPR-VAVIGENGSGKSTLARAIAGL-----ADVVAGEVSVHGVDAVR-DVKALRRTVG----FVFANPaaqM 72
Cdd:PRK15134 26 NDVSLQIEAGEtLALVGESGSGKSVTALSILRLlpsppVVYPSGDIRFHGESLLHaSEQTLRGVRGnkiaMIFQEP---M 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 73 VMPTVREDVE---LTVKSLRDDAGRRLAKDDVAARVAAALEEHRLTALADRAcLSLSSGQAQRLAMCSVMTAGPSLVIAD 149
Cdd:PRK15134 103 VSLNPLHTLEkqlYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYP-HQLSGGERQRVMIAMALLTRPELLIAD 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 150 EPTSLLDgrhRRIVADRL-LAADPSAPDGFQLLLVTHDLELAR--ACDEAVWIHGGHVER 206
Cdd:PRK15134 182 EPTTALD---VSVQAQILqLLRELQQELNMGLLFITHNLSIVRklADRVAVMQNGRCVEQ 238
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
119-204 |
1.60e-03 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 38.39 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 119 DRACLSLSSGQAQRLAMCSVMTAGPS--LVIADEPTSlldGRHRRiVADRLLAADPSAPD-GFQLLLVTHDLELARACDE 195
Cdd:cd03270 132 SRSAPTLSGGEAQRIRLATQIGSGLTgvLYVLDEPSI---GLHPR-DNDRLIETLKRLRDlGNTVLVVEHDEDTIRAADH 207
|
90
....*....|....*
gi 2158298083 196 AV------WIHGGHV 204
Cdd:cd03270 208 VIdigpgaGVHGGEI 222
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
3-49 |
1.95e-03 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 39.00 E-value: 1.95e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 2158298083 3 LDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD 49
Cdd:PRK09700 21 LKSVNLTVYPGEIhALLGENGAGKSTLMKVLSGIHEPTKGTITINNIN 68
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
3-47 |
2.16e-03 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 38.83 E-value: 2.16e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 2158298083 3 LDGVDLTLTAPRV-AVIGENGSGKSTLARAIAGLADVVAGEVSVHG 47
Cdd:PRK10762 20 LSGAALNVYPGRVmALVGENGAGKSTMMKVLTGIYTRDAGSILYLG 65
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
3-35 |
2.47e-03 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 38.37 E-value: 2.47e-03
10 20 30
....*....|....*....|....*....|....
gi 2158298083 3 LDGVDLTLTAPR-VAVIGENGSGKSTLARAIAGL 35
Cdd:PRK13549 21 LDNVSLKVRAGEiVSLCGENGAGKSTLMKVLSGV 54
|
|
| COG4637 |
COG4637 |
Predicted ATPase [General function prediction only]; |
3-44 |
2.94e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443675 [Multi-domain] Cd Length: 371 Bit Score: 37.99 E-value: 2.94e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 2158298083 3 LDGVDLTLtAPRVAVIGENGSGKSTLARAIAGLADVVAGEVS 44
Cdd:COG4637 13 LRDLELPL-GPLTVLIGANGSGKSNLLDALRFLSDAARGGLQ 53
|
|
| COG3950 |
COG3950 |
Predicted ATP-binding protein involved in virulence [General function prediction only]; |
6-33 |
4.29e-03 |
|
Predicted ATP-binding protein involved in virulence [General function prediction only];
Pssm-ID: 443150 [Multi-domain] Cd Length: 276 Bit Score: 37.28 E-value: 4.29e-03
10 20
....*....|....*....|....*...
gi 2158298083 6 VDLTLTAPRVAVIGENGSGKSTLARAIA 33
Cdd:COG3950 19 IDFDNPPRLTVLVGENGSGKTTLLEAIA 46
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
2-34 |
4.64e-03 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 37.62 E-value: 4.64e-03
10 20 30
....*....|....*....|....*....|....
gi 2158298083 2 LLDGVDLTLTA-PRVAVIGENGSGKSTLARAIAG 34
Cdd:PRK11147 18 LLDNAELHIEDnERVCLVGRNGAGKSTLMKILNG 51
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
7-151 |
7.26e-03 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 36.67 E-value: 7.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 7 DLTLTAPR---VAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVD----AVRDVKALRRTVGFVFANPAAQMVMpTVRE 79
Cdd:PRK11831 25 NISLTVPRgkiTAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENipamSRSRLYTVRKRMSMLFQSGALFTDM-NVFD 103
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2158298083 80 DVELtvkSLRDDAgrRLAKDDVAARVAAALEEHRLTALADRACLSLSSGQAQRLAMCSVMTAGPSLVIADEP 151
Cdd:PRK11831 104 NVAY---PLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEP 170
|
|
| RloC |
COG4694 |
Wobble nucleotide-excising tRNase [Translation, ribosomal structure and biogenesis]; |
19-37 |
7.39e-03 |
|
Wobble nucleotide-excising tRNase [Translation, ribosomal structure and biogenesis];
Pssm-ID: 443729 [Multi-domain] Cd Length: 692 Bit Score: 37.02 E-value: 7.39e-03
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
3-32 |
8.34e-03 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 36.90 E-value: 8.34e-03
10 20 30
....*....|....*....|....*....|
gi 2158298083 3 LDGVDLTLTAPRVAVIGENGSGKSTLARAI 32
Cdd:COG3593 14 IKDLSIELSDDLTVLVGENNSGKSSILEAL 43
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
17-191 |
9.48e-03 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 36.64 E-value: 9.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 17 VIGENGSGKSTLARAIAGLADVVAGEVsvhgvdavrdVKALRRTVGFV----FANPAAqmvmpTVREDVELTVKSLRdDA 92
Cdd:PRK11819 38 VLGLNGAGKSTLLRIMAGVDKEFEGEA----------RPAPGIKVGYLpqepQLDPEK-----TVRENVEEGVAEVK-AA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2158298083 93 GRRL-----------AKDDVAARVAAALEE-----------HRL----TAL----ADRACLSLSSGQAQRLAMCSVMTAG 142
Cdd:PRK11819 102 LDRFneiyaayaepdADFDALAAEQGELQEiidaadawdldSQLeiamDALrcppWDAKVTKLSGGERRRVALCRLLLEK 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2158298083 143 PSLVIADEPTSLLDGRHrriVA--DRLLAADPSApdgfqLLLVTHD-----------LELAR 191
Cdd:PRK11819 182 PDMLLLDEPTNHLDAES---VAwlEQFLHDYPGT-----VVAVTHDryfldnvagwiLELDR 235
|
|
| Gem1 |
COG1100 |
GTPase SAR1 family domain [General function prediction only]; |
14-52 |
9.83e-03 |
|
GTPase SAR1 family domain [General function prediction only];
Pssm-ID: 440717 [Multi-domain] Cd Length: 177 Bit Score: 35.73 E-value: 9.83e-03
10 20 30
....*....|....*....|....*....|....*....
gi 2158298083 14 RVAVIGENGSGKSTLARAIAGLADVVAGEVSVHGVDAVR 52
Cdd:COG1100 5 KIVVVGTGGVGKTSLVNRLVGDIFSLEKYLSTNGVTIDK 43
|
|
| |
